Miyakogusa Predicted Gene

Lj3g3v0422710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0422710.1 Non Chatacterized Hit- tr|I1MI58|I1MI58_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.53483
PE,84.75,0,RECA_2,DNA recombination/repair protein RecA/RadB,
ATP-binding domain; DNA REPAIR PROTEIN RECA,DNA r,CUFF.40664.1
         (253 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G79050.2 | Symbols:  | recA DNA recombination family protein ...   323   7e-89
AT1G79050.1 | Symbols:  | recA DNA recombination family protein ...   323   9e-89
AT2G19490.1 | Symbols:  | recA DNA recombination family protein ...   156   1e-38
AT3G10140.1 | Symbols: RECA3 | RECA homolog 3 | chr3:3134984-313...   120   1e-27
AT3G32920.1 | Symbols:  | P-loop containing nucleoside triphosph...    92   4e-19
AT3G32920.2 | Symbols:  | P-loop containing nucleoside triphosph...    91   5e-19

>AT1G79050.2 | Symbols:  | recA DNA recombination family protein |
           chr1:29737364-29740140 REVERSE LENGTH=343
          Length = 343

 Score =  323 bits (828), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 170/228 (74%), Positives = 183/228 (80%), Gaps = 6/228 (2%)

Query: 18  SYSAMDLVFPLKPHTLILNAPSSSLFLPRRL--PVKFRSLSPLCASKHVKIQCELEGKIN 75
           S++ +  +FP  P +    +   S    RRL  PV   +   L      KI  E + +IN
Sbjct: 14  SFTPLSPLFPFTPCSSFSPSLRFSSCYSRRLYSPVTVYAAKKLSH----KISSEFDDRIN 69

Query: 76  GALSGDLDPRFIDRQKALEAAMNDINNSFGKGSVTRLGSAGGALVETFPSGCLTLDCALG 135
           GALS D D RF+DRQKALEAAMNDIN+SFGKGSVTRLGSAGGALVETF SG LTLD ALG
Sbjct: 70  GALSPDADSRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFSSGILTLDLALG 129

Query: 136 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVEN 195
           GGLPKGR+VEI+GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVEN
Sbjct: 130 GGLPKGRVVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVEN 189

Query: 196 LIVCQPDNGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEVNIGF 243
           LIVCQPDNGEMALE ADRMCRSGAVDLICVDSVSALTPRAEIE  IG 
Sbjct: 190 LIVCQPDNGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGM 237


>AT1G79050.1 | Symbols:  | recA DNA recombination family protein |
           chr1:29737084-29740140 REVERSE LENGTH=439
          Length = 439

 Score =  323 bits (827), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 170/228 (74%), Positives = 183/228 (80%), Gaps = 6/228 (2%)

Query: 18  SYSAMDLVFPLKPHTLILNAPSSSLFLPRRL--PVKFRSLSPLCASKHVKIQCELEGKIN 75
           S++ +  +FP  P +    +   S    RRL  PV   +   L      KI  E + +IN
Sbjct: 14  SFTPLSPLFPFTPCSSFSPSLRFSSCYSRRLYSPVTVYAAKKLSH----KISSEFDDRIN 69

Query: 76  GALSGDLDPRFIDRQKALEAAMNDINNSFGKGSVTRLGSAGGALVETFPSGCLTLDCALG 135
           GALS D D RF+DRQKALEAAMNDIN+SFGKGSVTRLGSAGGALVETF SG LTLD ALG
Sbjct: 70  GALSPDADSRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFSSGILTLDLALG 129

Query: 136 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVEN 195
           GGLPKGR+VEI+GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVEN
Sbjct: 130 GGLPKGRVVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVEN 189

Query: 196 LIVCQPDNGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEVNIGF 243
           LIVCQPDNGEMALE ADRMCRSGAVDLICVDSVSALTPRAEIE  IG 
Sbjct: 190 LIVCQPDNGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGM 237


>AT2G19490.1 | Symbols:  | recA DNA recombination family protein |
           chr2:8441732-8444006 FORWARD LENGTH=430
          Length = 430

 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/156 (56%), Positives = 114/156 (73%), Gaps = 2/156 (1%)

Query: 89  RQKALEAAMNDINNSFGKGSVTRLGSAGGAL-VETFPSGCLTLDCALG-GGLPKGRIVEI 146
           ++ AL+ A++ I +SFGKGS+  LG A     V  F +G   LD ALG GGLPKGR+VEI
Sbjct: 58  KEIALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGRVVEI 117

Query: 147 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEM 206
           +GPE+SGKTTLALH IAE QK GG  + VDAEHA D + +KA+GV+ ENL++ QPD GE 
Sbjct: 118 YGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGEQ 177

Query: 207 ALEIADRMCRSGAVDLICVDSVSALTPRAEIEVNIG 242
           AL + D + RSG+VD+I VDSV+AL P+ E+E  +G
Sbjct: 178 ALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMG 213


>AT3G10140.1 | Symbols: RECA3 | RECA homolog 3 |
           chr3:3134984-3137069 FORWARD LENGTH=389
          Length = 389

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 105/162 (64%), Gaps = 2/162 (1%)

Query: 83  DPRFIDRQKALEAAMNDINNSFGKGSVTRLGS-AGGALVETFPSGCLTLDCALG-GGLPK 140
           D +  ++  AL  A++ ++  F K S   L        V    +G L LD ALG GGLPK
Sbjct: 56  DRKVAEKDTALHLALSQLSGDFDKDSKLSLQRFYRKRRVSVISTGSLNLDLALGVGGLPK 115

Query: 141 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQ 200
           GR+VE++G E+SGKTTLALH I E QKLGG    +DAE+A DP+ ++++GV+ E L++ +
Sbjct: 116 GRMVEVYGKEASGKTTLALHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNTEELLISR 175

Query: 201 PDNGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEVNIG 242
           P + E  L I D + +SG+VD+I VDSV+AL P+ E++  +G
Sbjct: 176 PSSAEKMLNIVDVLTKSGSVDVIVVDSVAALAPQCELDAPVG 217


>AT3G32920.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr3:13485399-13486713
           REVERSE LENGTH=226
          Length = 226

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 83/124 (66%), Gaps = 16/124 (12%)

Query: 120 VETFPSGCLTLDCALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 178
           V  F +G   LD ALG GGLPKGR+VEI+GPE+SGKT LALH ++         +L+ + 
Sbjct: 12  VPVFSTGSFALDVALGVGGLPKGRLVEIYGPEASGKTALALHMLS--------MLLIRS- 62

Query: 179 HAFDPAYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIE 238
                  +KA+GV+ ENL++ QPD G+ AL + D + +SG+VD+I VDSV+AL P+ E++
Sbjct: 63  ------LAKAIGVNTENLLLSQPDCGKQALSLVDTLIQSGSVDVIVVDSVAALVPKGELD 116

Query: 239 VNIG 242
             +G
Sbjct: 117 GEMG 120


>AT3G32920.2 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr3:13485399-13486713
           REVERSE LENGTH=195
          Length = 195

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 83/124 (66%), Gaps = 16/124 (12%)

Query: 120 VETFPSGCLTLDCALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 178
           V  F +G   LD ALG GGLPKGR+VEI+GPE+SGKT LALH ++         +L+ + 
Sbjct: 12  VPVFSTGSFALDVALGVGGLPKGRLVEIYGPEASGKTALALHMLS--------MLLIRS- 62

Query: 179 HAFDPAYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIE 238
                  +KA+GV+ ENL++ QPD G+ AL + D + +SG+VD+I VDSV+AL P+ E++
Sbjct: 63  ------LAKAIGVNTENLLLSQPDCGKQALSLVDTLIQSGSVDVIVVDSVAALVPKGELD 116

Query: 239 VNIG 242
             +G
Sbjct: 117 GEMG 120