Miyakogusa Predicted Gene

Lj3g3v0409470.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0409470.2 Non Chatacterized Hit- tr|C4J1R7|C4J1R7_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,48.28,0.0000000000007,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; seg,NULL; RNA recognition motif,RNA recognition
mot,CUFF.40655.2
         (303 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 | chr3:48...   355   2e-98
AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20...   335   2e-92
AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20...   334   4e-92
AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 | chr1:...   317   6e-87
AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 | chr3:...   313   1e-85
AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 | chr3:...   313   1e-85
AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting d...   309   1e-84
AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1:...   301   4e-82
AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 1...   292   2e-79
AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 | chr5:...   272   2e-73
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1...    62   7e-10
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro...    56   3e-08
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2...    56   3e-08
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2...    56   3e-08
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1...    53   3e-07
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |...    53   3e-07
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |...    50   1e-06
AT2G16940.2 | Symbols:  | Splicing factor, CC1-like | chr2:73428...    50   2e-06
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like...    50   2e-06
AT2G16940.1 | Symbols:  | Splicing factor, CC1-like | chr2:73428...    50   2e-06

>AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 |
           chr3:4849788-4851601 FORWARD LENGTH=327
          Length = 327

 Score =  355 bits (912), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 176/281 (62%), Positives = 209/281 (74%), Gaps = 3/281 (1%)

Query: 24  DSKPNLDSEFNMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSP-NPFLVXX 82
           DSK   +S  +M KLV +F KLNPLA+EF PS Y     +++     NQ+ P + F    
Sbjct: 39  DSKTETESRLDMHKLVAMFKKLNPLAKEFFPSYYDP--KKNNQVAKANQFLPADDFETTK 96

Query: 83  XXXKPLADDQYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEER 142
                  D                         + KAQREDS+RRTVYVSDIDQ VTEE 
Sbjct: 97  KQSGEEFDLDAKKDDNTRKRRNYSQGRRRLTGRISKAQREDSIRRTVYVSDIDQSVTEEG 156

Query: 143 LAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKT 202
           LA LF+ CG V+DCRICGDPHSVLRFAFVEFAD+ GA  AL+L GT+LG+YPVRVLPSKT
Sbjct: 157 LAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSLGGTMLGFYPVRVLPSKT 216

Query: 203 AILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVH 262
           AILPVNPTFLPRS+DEREMC+RT+YCTNIDKKVSQA+V+NFFE +CGEVTR+RLLGD +H
Sbjct: 217 AILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLH 276

Query: 263 STRIAFVEFAIAESAIIALSCSGMLLGTQPVRVSPSKTPVR 303
           STRIAFVEFA+A+SA+ AL+CSGM++G+QP+RVSPSKTPVR
Sbjct: 277 STRIAFVEFALADSALSALNCSGMVVGSQPIRVSPSKTPVR 317



 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 127 RTVYVSDIDQHVTEERLAALF-TTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           RT+Y ++ID+ V++  +   F + CG V   R+ GD     R AFVEFA    A +ALN 
Sbjct: 238 RTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFALADSALSALNC 297

Query: 186 SGTVLGYYPVRVLPSKTAILP 206
           SG V+G  P+RV PSKT + P
Sbjct: 298 SGMVVGSQPIRVSPSKTPVRP 318


>AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 |
           chr1:20029262-20031243 REVERSE LENGTH=308
          Length = 308

 Score =  335 bits (860), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 168/281 (59%), Positives = 208/281 (74%), Gaps = 21/281 (7%)

Query: 24  DSKPNLDSEFN-MQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSPNPFLVXX 82
           D KP    E++ M+KLV +F KLNP A+EF PS      ++ + +Q       + F++  
Sbjct: 38  DLKPKSKPEYDQMKKLVAMFKKLNPEAKEFFPS------YKRNTNQS------DDFVIAI 85

Query: 83  XXXKPLADDQYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEER 142
              KP  +D                          KAQREDS+RRTVYVSDIDQ VTEE 
Sbjct: 86  ---KPSGEDN-----KKRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEG 137

Query: 143 LAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKT 202
           LA LF++CG V+DCRICGDP+SVLRFAFVEF+D+ GAR+AL+L GT++GYYPVRVLPSKT
Sbjct: 138 LAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKT 197

Query: 203 AILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVH 262
           AILPVNPTFLPRS+DEREMCSRT+YCTN+DK  ++ +V  FF+ +CGEVTR+RLLGD VH
Sbjct: 198 AILPVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVH 257

Query: 263 STRIAFVEFAIAESAIIALSCSGMLLGTQPVRVSPSKTPVR 303
           STRIAFVEFA+AESA+ AL+CSG++LG+QP+RVSPSKTPVR
Sbjct: 258 STRIAFVEFAMAESAVAALNCSGIVLGSQPIRVSPSKTPVR 298


>AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 |
           chr1:20029262-20031243 REVERSE LENGTH=314
          Length = 314

 Score =  334 bits (857), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 168/282 (59%), Positives = 208/282 (73%), Gaps = 17/282 (6%)

Query: 24  DSKPNLDSEFN-MQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSPNPFLVXX 82
           D KP    E++ M+KLV +F KLNP A+EF PS      ++ + +Q       + F++  
Sbjct: 38  DLKPKSKPEYDQMKKLVAMFKKLNPEAKEFFPS------YKRNTNQS------DDFVIAI 85

Query: 83  XXXKPLADDQYPXXXXXXXXXXXXXXXXXXX-XXVLKAQREDSVRRTVYVSDIDQHVTEE 141
              KP  +D                           KAQREDS+RRTVYVSDIDQ VTEE
Sbjct: 86  ---KPSGEDNKKVAINRRRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEE 142

Query: 142 RLAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSK 201
            LA LF++CG V+DCRICGDP+SVLRFAFVEF+D+ GAR+AL+L GT++GYYPVRVLPSK
Sbjct: 143 GLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSK 202

Query: 202 TAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHV 261
           TAILPVNPTFLPRS+DEREMCSRT+YCTN+DK  ++ +V  FF+ +CGEVTR+RLLGD V
Sbjct: 203 TAILPVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQV 262

Query: 262 HSTRIAFVEFAIAESAIIALSCSGMLLGTQPVRVSPSKTPVR 303
           HSTRIAFVEFA+AESA+ AL+CSG++LG+QP+RVSPSKTPVR
Sbjct: 263 HSTRIAFVEFAMAESAVAALNCSGIVLGSQPIRVSPSKTPVR 304


>AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 |
           chr1:11875174-11877188 REVERSE LENGTH=358
          Length = 358

 Score =  317 bits (812), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 157/270 (58%), Positives = 190/270 (70%), Gaps = 2/270 (0%)

Query: 34  NMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSPNPFLVXXXXXKPLADDQY 93
           +M++L ++F+KLNP+AEEF+P S                 S   F               
Sbjct: 82  DMRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGG--FFTSAGSFFRNNGFAGTGNGGYG 139

Query: 94  PXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSV 153
                                    AQRED +RRTVYVSD+DQ VTEE+LA LF +CG V
Sbjct: 140 NENGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQV 199

Query: 154 IDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPTFLP 213
           +DCRICGDP+SVLRFAF+EF DE GA  ALNLSGT+LG+YPV+VLPSKTAI PVNPTFLP
Sbjct: 200 VDCRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLP 259

Query: 214 RSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAI 273
           R++DEREMC+RT+YCTNIDKKV+Q++VK FFE  CGEV R+RLLGD+ HSTRIAFVEF +
Sbjct: 260 RTEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVM 319

Query: 274 AESAIIALSCSGMLLGTQPVRVSPSKTPVR 303
           AESAI AL+CSG++LG+ P+RVSPSKTPVR
Sbjct: 320 AESAIAALNCSGVVLGSLPIRVSPSKTPVR 349



 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 127 RTVYVSDIDQHVTEERLAALFTT-CGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           RT+Y ++ID+ VT+  +   F + CG V   R+ GD     R AFVEF     A AALN 
Sbjct: 270 RTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAALNC 329

Query: 186 SGTVLGYYPVRVLPSKTAILPVNP 209
           SG VLG  P+RV PSKT + P +P
Sbjct: 330 SGVVLGSLPIRVSPSKTPVRPRSP 353


>AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 |
           chr3:18314901-18317658 REVERSE LENGTH=353
          Length = 353

 Score =  313 bits (801), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 159/278 (57%), Positives = 199/278 (71%), Gaps = 19/278 (6%)

Query: 30  DSEFNMQKLVDIFTKLNPLAEEFIPSSYA---AAAHRDHLHQGF-NQWSPNPFLVXXXXX 85
           D+   ++ L D F+KLNP+A+EF+P S A   +   R+ L  GF N ++  P L      
Sbjct: 82  DNNGEIKDLADAFSKLNPMAQEFVPPSLARSQSGVLRNGL--GFTNNFAAPPKLAD---- 135

Query: 86  KPLADDQYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEERLAA 145
               +D +P                        AQ++D +RRTVYVSDIDQ VTEE LA 
Sbjct: 136 ---GNDHFPRRRRSFGQGKRRMNKRTSL-----AQKDDVIRRTVYVSDIDQQVTEENLAG 187

Query: 146 LFTTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAIL 205
           +F  CG V+DCR+CGDP+SVLRFAF+EF +E GARAAL++SGTVLG+YP++VLPSKTAI 
Sbjct: 188 VFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAIA 247

Query: 206 PVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTR 265
           PVNPTFLPRS+DEREMC RTVYCTNIDK+++Q ++K FFE+ CGEV R+R LGD+ H TR
Sbjct: 248 PVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLR-LGDYHHQTR 306

Query: 266 IAFVEFAIAESAIIALSCSGMLLGTQPVRVSPSKTPVR 303
           IAFVEFA+AESAI AL CSG++LG  P+RVSPSKTPVR
Sbjct: 307 IAFVEFAMAESAIAALHCSGIVLGALPIRVSPSKTPVR 344



 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 55/91 (60%), Gaps = 6/91 (6%)

Query: 127 RTVYVSDIDQHVTEERLAALFTT-CGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           RTVY ++ID+ +T+  L   F   CG V   R+ GD H   R AFVEFA    A AAL+ 
Sbjct: 266 RTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAESAIAALHC 324

Query: 186 SGTVLGYYPVRVLPSKTAILPVNPTFLPRSD 216
           SG VLG  P+RV PSKT   PV P F PR++
Sbjct: 325 SGIVLGALPIRVSPSKT---PVRPHF-PRAE 351


>AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 |
           chr3:18314901-18317658 REVERSE LENGTH=353
          Length = 353

 Score =  313 bits (801), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 159/278 (57%), Positives = 199/278 (71%), Gaps = 19/278 (6%)

Query: 30  DSEFNMQKLVDIFTKLNPLAEEFIPSSYA---AAAHRDHLHQGF-NQWSPNPFLVXXXXX 85
           D+   ++ L D F+KLNP+A+EF+P S A   +   R+ L  GF N ++  P L      
Sbjct: 82  DNNGEIKDLADAFSKLNPMAQEFVPPSLARSQSGVLRNGL--GFTNNFAAPPKLAD---- 135

Query: 86  KPLADDQYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEERLAA 145
               +D +P                        AQ++D +RRTVYVSDIDQ VTEE LA 
Sbjct: 136 ---GNDHFPRRRRSFGQGKRRMNKRTSL-----AQKDDVIRRTVYVSDIDQQVTEENLAG 187

Query: 146 LFTTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAIL 205
           +F  CG V+DCR+CGDP+SVLRFAF+EF +E GARAAL++SGTVLG+YP++VLPSKTAI 
Sbjct: 188 VFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAIA 247

Query: 206 PVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTR 265
           PVNPTFLPRS+DEREMC RTVYCTNIDK+++Q ++K FFE+ CGEV R+R LGD+ H TR
Sbjct: 248 PVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLR-LGDYHHQTR 306

Query: 266 IAFVEFAIAESAIIALSCSGMLLGTQPVRVSPSKTPVR 303
           IAFVEFA+AESAI AL CSG++LG  P+RVSPSKTPVR
Sbjct: 307 IAFVEFAMAESAIAALHCSGIVLGALPIRVSPSKTPVR 344



 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 55/91 (60%), Gaps = 6/91 (6%)

Query: 127 RTVYVSDIDQHVTEERLAALFTT-CGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           RTVY ++ID+ +T+  L   F   CG V   R+ GD H   R AFVEFA    A AAL+ 
Sbjct: 266 RTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAESAIAALHC 324

Query: 186 SGTVLGYYPVRVLPSKTAILPVNPTFLPRSD 216
           SG VLG  P+RV PSKT   PV P F PR++
Sbjct: 325 SGIVLGALPIRVSPSKT---PVRPHF-PRAE 351


>AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting
           domain 12 | chr4:6557336-6559143 FORWARD LENGTH=336
          Length = 336

 Score =  309 bits (792), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 156/272 (57%), Positives = 193/272 (70%), Gaps = 12/272 (4%)

Query: 34  NMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQ--WSPNPFLVXXXXXKPLADD 91
           +M++L ++ +KLNP+A+EFIP S         +  GFN   ++ N   V         D 
Sbjct: 65  DMRELHELLSKLNPMAKEFIPPSLTKP-----VVNGFNGGFFAVNNGFVAAGNFPVNEDG 119

Query: 92  QYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEERLAALFTTCG 151
            +                         AQRE+ +RRTVYVSDIDQ VTEE+LA LF   G
Sbjct: 120 SFRRKKSFGQQGKRRMNPRTSL-----AQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFG 174

Query: 152 SVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPTF 211
            V+DCRICGDP+SVLRFAF+EF DE GAR ALNLSGT+LG+YPV+V+PSKTAI PVNPTF
Sbjct: 175 QVVDCRICGDPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTF 234

Query: 212 LPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEF 271
           LPR++DEREMC+RT+YCTNIDKK++Q ++K FFE  CGEV R+RLLGD+ H TRI FVEF
Sbjct: 235 LPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEF 294

Query: 272 AIAESAIIALSCSGMLLGTQPVRVSPSKTPVR 303
            +AESAI AL+CSG+LLG+ P+RVSPSKTPVR
Sbjct: 295 VMAESAIAALNCSGVLLGSLPIRVSPSKTPVR 326


>AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 |
           chr1:11875028-11877188 REVERSE LENGTH=406
          Length = 406

 Score =  301 bits (771), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 149/263 (56%), Positives = 182/263 (69%), Gaps = 2/263 (0%)

Query: 34  NMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSPNPFLVXXXXXKPLADDQY 93
           +M++L ++F+KLNP+AEEF+P S                 S   F               
Sbjct: 82  DMRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGG--FFTSAGSFFRNNGFAGTGNGGYG 139

Query: 94  PXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSV 153
                                    AQRED +RRTVYVSD+DQ VTEE+LA LF +CG V
Sbjct: 140 NENGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQV 199

Query: 154 IDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPTFLP 213
           +DCRICGDP+SVLRFAF+EF DE GA  ALNLSGT+LG+YPV+VLPSKTAI PVNPTFLP
Sbjct: 200 VDCRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLP 259

Query: 214 RSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAI 273
           R++DEREMC+RT+YCTNIDKKV+Q++VK FFE  CGEV R+RLLGD+ HSTRIAFVEF +
Sbjct: 260 RTEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVM 319

Query: 274 AESAIIALSCSGMLLGTQPVRVS 296
           AESAI AL+CSG++LG+ P+R S
Sbjct: 320 AESAIAALNCSGVVLGSLPIRSS 342



 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 224 RTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSC 283
           RTVY +++D++V++ ++   F +SCG+V   R+ GD     R AF+EF   E A+ AL+ 
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLF-VSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNL 231

Query: 284 SGMLLGTQPVRVSPSKTPV 302
           SG +LG  PV+V PSKT +
Sbjct: 232 SGTMLGFYPVKVLPSKTAI 250


>AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 12 |
           chr4:6557336-6559019 FORWARD LENGTH=326
          Length = 326

 Score =  292 bits (748), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 147/263 (55%), Positives = 184/263 (69%), Gaps = 12/263 (4%)

Query: 34  NMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQ--WSPNPFLVXXXXXKPLADD 91
           +M++L ++ +KLNP+A+EFIP S         +  GFN   ++ N   V         D 
Sbjct: 65  DMRELHELLSKLNPMAKEFIPPSLTKP-----VVNGFNGGFFAVNNGFVAAGNFPVNEDG 119

Query: 92  QYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEERLAALFTTCG 151
            +                         AQRE+ +RRTVYVSDIDQ VTEE+LA LF   G
Sbjct: 120 SFRRKKSFGQQGKRRMNPRTSL-----AQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFG 174

Query: 152 SVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPTF 211
            V+DCRICGDP+SVLRFAF+EF DE GAR ALNLSGT+LG+YPV+V+PSKTAI PVNPTF
Sbjct: 175 QVVDCRICGDPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTF 234

Query: 212 LPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEF 271
           LPR++DEREMC+RT+YCTNIDKK++Q ++K FFE  CGEV R+RLLGD+ H TRI FVEF
Sbjct: 235 LPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEF 294

Query: 272 AIAESAIIALSCSGMLLGTQPVR 294
            +AESAI AL+CSG+LLG+ P+R
Sbjct: 295 VMAESAIAALNCSGVLLGSLPIR 317



 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 1/83 (1%)

Query: 220 EMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAII 279
           E+  RTVY ++ID++V++ ++   F I  G+V   R+ GD     R AF+EF     A  
Sbjct: 146 EIIRRTVYVSDIDQQVTEEQLAGLF-IGFGQVVDCRICGDPNSVLRFAFIEFTDEVGART 204

Query: 280 ALSCSGMLLGTQPVRVSPSKTPV 302
           AL+ SG +LG  PV+V PSKT +
Sbjct: 205 ALNLSGTMLGFYPVKVMPSKTAI 227


>AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 |
           chr5:8345402-8347776 REVERSE LENGTH=320
          Length = 320

 Score =  272 bits (695), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 140/273 (51%), Positives = 177/273 (64%), Gaps = 14/273 (5%)

Query: 31  SEFNMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSPNPFLVXXXXXKPLAD 90
           SE N++  +   + LNP+A+EF+PS  A   H +     F  W  N F            
Sbjct: 55  SEVNLKSEI---SHLNPMAKEFVPSFLAQTHHSEFWGNRF--WFTNHF----PKQTIFLI 105

Query: 91  DQYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEERLAALFTTC 150
            Q+                          Q ED ++RTVYVSDID  VTEE+LA+LF +C
Sbjct: 106 GQFATMRRNFGKGRPWITKKTNL-----VQNEDMIKRTVYVSDIDNQVTEEQLASLFLSC 160

Query: 151 GSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPT 210
           G V+DCR+CGD  S+LRFAF+EF D  GAR+AL  SGT+ G +P+RV  SKTAI PVNP+
Sbjct: 161 GQVVDCRMCGDYKSILRFAFIEFTDAEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPS 220

Query: 211 FLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVE 270
           FLP+S DE E C +TVYCTNIDK+V++ E++NFF+  CGEV  +RLLGD  H TRIAFVE
Sbjct: 221 FLPQSKDELEKCGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVE 280

Query: 271 FAIAESAIIALSCSGMLLGTQPVRVSPSKTPVR 303
           F +AESAI AL+CSG++LG  P+RVSPSKTPVR
Sbjct: 281 FKLAESAISALNCSGVVLGELPIRVSPSKTPVR 313


>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
           chr1:12433356-12434735 REVERSE LENGTH=407
          Length = 407

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 15/161 (9%)

Query: 124 SVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR-FAFVEFADEYGARAA 182
           S R  V+V ++D+ +  ++L  +F+  G V+ C++  D   V + + FV+F  +     A
Sbjct: 28  SGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTA 87

Query: 183 LNL-SGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVK 241
            N  +GT++    + V P           F+ R   ++      VY  N+ +  + A++K
Sbjct: 88  CNFHNGTLIRNQHIHVCP-----------FVSRGQWDKSRVFTNVYVKNLVETATDADLK 136

Query: 242 NFFEISCGEVTRIRLLGD-HVHSTRIAFVEFAIAESAIIAL 281
             F    GE+T   ++ D    S R  FV F  AE+A+ A+
Sbjct: 137 RLFG-EFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176


>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
           protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
          Length = 629

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 18/175 (10%)

Query: 128 TVYVSDIDQHVTEERLAALFTTCGSVIDCRICGD--PHSVLRFAFVEFAD-EYGARAALN 184
           ++YV D+D +VT+ +L   F   G+V+  R+C D      L + +V F + +  ARA   
Sbjct: 37  SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96

Query: 185 LSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFF 244
           L+   L   P+RV+ S             R    R   +  ++  N+D+ +    + + F
Sbjct: 97  LNYIPLYGKPIRVMYSH------------RDPSVRRSGAGNIFIKNLDESIDHKALHDTF 144

Query: 245 EISCGEVTRIRLLGDHV-HSTRIAFVEFAIAESAIIAL-SCSGMLLGTQPVRVSP 297
             S G +   ++  D    S    FV++A  ESA  A+   +GMLL  + V V P
Sbjct: 145 S-SFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198


>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
           chr1:26990777-26993489 REVERSE LENGTH=682
          Length = 682

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 15/172 (8%)

Query: 128 TVYVSDIDQHVTEERLAALFTTCGSVIDCRICGD-PHSVLRFAFVEFADEYGARAALNLS 186
           ++YV D+D  V E  L  LF     V + R+C D  H  L +A+V FA+   A  A+   
Sbjct: 60  SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAM--- 116

Query: 187 GTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEI 246
              L Y P+R  P +  +   +P+        R      V+  N+D  +    +   F  
Sbjct: 117 -ESLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDASIDNKALYETFS- 167

Query: 247 SCGEVTRIRLLGDHV-HSTRIAFVEFAIAESAIIAL-SCSGMLLGTQPVRVS 296
           S G +   ++  D V  S    FV+F   E+A  A+   +GMLL  + V V 
Sbjct: 168 SFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG 219


>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
           chr1:26990777-26993489 REVERSE LENGTH=682
          Length = 682

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 15/172 (8%)

Query: 128 TVYVSDIDQHVTEERLAALFTTCGSVIDCRICGD-PHSVLRFAFVEFADEYGARAALNLS 186
           ++YV D+D  V E  L  LF     V + R+C D  H  L +A+V FA+   A  A+   
Sbjct: 60  SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAM--- 116

Query: 187 GTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEI 246
              L Y P+R  P +  +   +P+        R      V+  N+D  +    +   F  
Sbjct: 117 -ESLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDASIDNKALYETFS- 167

Query: 247 SCGEVTRIRLLGDHV-HSTRIAFVEFAIAESAIIAL-SCSGMLLGTQPVRVS 296
           S G +   ++  D V  S    FV+F   E+A  A+   +GMLL  + V V 
Sbjct: 168 SFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG 219


>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
           chr1:18416740-18419753 FORWARD LENGTH=671
          Length = 671

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 18/175 (10%)

Query: 128 TVYVSDIDQHVTEERLAALFTTCGSVIDCRICGD--PHSVLRFAFVEFADEYGARAALN- 184
           ++YV D+D  VT+ +L   FT  G V+  R+C D      L + +V +A    A  ALN 
Sbjct: 46  SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105

Query: 185 LSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFF 244
           L+   L    +RV+            +  R    R+     ++  N+DK +    +   F
Sbjct: 106 LNFMALNGRAIRVM------------YSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETF 153

Query: 245 EISCGEVTRIRLLGD-HVHSTRIAFVEFAIAESAIIAL-SCSGMLLGTQPVRVSP 297
             + G +   ++  D    S    FV++   E+A  A+   +GMLL  + V V P
Sbjct: 154 S-AFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGP 207


>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
           chr1:18416740-18419753 FORWARD LENGTH=671
          Length = 671

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 18/175 (10%)

Query: 128 TVYVSDIDQHVTEERLAALFTTCGSVIDCRICGD--PHSVLRFAFVEFADEYGARAALN- 184
           ++YV D+D  VT+ +L   FT  G V+  R+C D      L + +V +A    A  ALN 
Sbjct: 46  SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105

Query: 185 LSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFF 244
           L+   L    +RV+            +  R    R+     ++  N+DK +    +   F
Sbjct: 106 LNFMALNGRAIRVM------------YSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETF 153

Query: 245 EISCGEVTRIRLLGD-HVHSTRIAFVEFAIAESAIIAL-SCSGMLLGTQPVRVSP 297
             + G +   ++  D    S    FV++   E+A  A+   +GMLL  + V V P
Sbjct: 154 S-AFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGP 207


>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
           chr2:9943209-9946041 FORWARD LENGTH=662
          Length = 662

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 18/175 (10%)

Query: 128 TVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDP--HSVLRFAFVEFADEYGARAALN- 184
           ++YV D+D +VT+ +L   FT    V+  R+C D   ++ L + +V +++   A  A+  
Sbjct: 47  SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106

Query: 185 LSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFF 244
           L+ + L    +R+            T+  R    R      ++  N+DK V    +   F
Sbjct: 107 LNYSYLNGKMIRI------------TYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAF 154

Query: 245 EISCGEVTRIRLLGDHVHSTR-IAFVEFAIAESAIIAL-SCSGMLLGTQPVRVSP 297
              CG +   ++  DH+  +R   FV+F   +SA  A+   +G +L  + + V P
Sbjct: 155 S-GCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGP 208


>AT2G16940.2 | Symbols:  | Splicing factor, CC1-like |
           chr2:7342869-7347052 REVERSE LENGTH=610
          Length = 610

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 86/201 (42%), Gaps = 28/201 (13%)

Query: 118 KAQREDSV---------RRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR- 167
           K ++ED V         +RTV+   I    TE  +   F+  G V D RI  D  S    
Sbjct: 213 KDKKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSR 272

Query: 168 -FAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPT---------FLPRSDD 217
              +VEF D      A+ LSG  L   PV V PS+     V  T           P S  
Sbjct: 273 GIGYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSG- 331

Query: 218 EREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTR-IAFVEFAIAES 276
                +R +Y  N+   +S+ +++  FE S G V  +++  D     +   FV+FA  E 
Sbjct: 332 ----GARRLYVGNLHINMSEDDLRKVFE-SFGSVELVQVPRDETGLCKGFGFVQFARLED 386

Query: 277 AIIALSCSGML-LGTQPVRVS 296
           A  AL+ +G L +  + ++VS
Sbjct: 387 ARNALNLNGQLEIAGRAIKVS 407


>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
           | chr3:6404270-6407822 REVERSE LENGTH=636
          Length = 636

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 7/177 (3%)

Query: 127 RTVYVSDIDQHVTEERLAALFTTCGSVIDCRICG-DPHSVLRFAFVEFADEYGARAALNL 185
           +T++  ++   +    +   F   G V+D R+   D  S   +  +EFA    A+ AL +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEM 443

Query: 186 SGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFE 245
           +G +L    VR+  +     P N     + +  +   SRT+Y       + + E+K    
Sbjct: 444 NGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQ---SRTIYVRGFSSSLGEDEIKKELR 500

Query: 246 I---SCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSCSGMLLGTQPVRVSPSK 299
                CGEVTR+ +  D        F    +      AL  SG  +G   + V  S+
Sbjct: 501 SHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFDEALQLSGSEIGGGNIHVEESR 557


>AT2G16940.1 | Symbols:  | Splicing factor, CC1-like |
           chr2:7342869-7347052 REVERSE LENGTH=561
          Length = 561

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 19/184 (10%)

Query: 126 RRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHS--VLRFAFVEFADEYGARAAL 183
           +RTV+   I    TE  +   F+  G V D RI  D  S       +VEF D      A+
Sbjct: 181 QRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI 240

Query: 184 NLSGTVLGYYPVRVLPSKTAILPVNPT---------FLPRSDDEREMCSRTVYCTNIDKK 234
            LSG  L   PV V PS+     V  T           P S       +R +Y  N+   
Sbjct: 241 ALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSG-----GARRLYVGNLHIN 295

Query: 235 VSQAEVKNFFEISCGEVTRIRLLGDHVHSTR-IAFVEFAIAESAIIALSCSGML-LGTQP 292
           +S+ +++  FE S G V  +++  D     +   FV+FA  E A  AL+ +G L +  + 
Sbjct: 296 MSEDDLRKVFE-SFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRA 354

Query: 293 VRVS 296
           ++VS
Sbjct: 355 IKVS 358