Miyakogusa Predicted Gene

Lj3g3v0409470.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0409470.1 Non Chatacterized Hit- tr|C4J1R7|C4J1R7_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,48.28,0.0000000000009,RNA recognition motif,RNA recognition motif
domain; seg,NULL; RNA-binding domain, RBD,NULL; RRM_6,NU,CUFF.40655.1
         (313 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 | chr3:48...   332   2e-91
AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20...   313   1e-85
AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20...   312   2e-85
AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1:...   296   2e-80
AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 | chr1:...   295   2e-80
AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 | chr3:...   291   5e-79
AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 | chr3:...   291   5e-79
AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 1...   287   5e-78
AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting d...   287   8e-78
AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 | chr5:...   249   2e-66
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1...    61   1e-09
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2...    54   9e-08
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2...    54   9e-08
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro...    52   7e-07
AT2G16940.2 | Symbols:  | Splicing factor, CC1-like | chr2:73428...    50   2e-06
AT2G16940.1 | Symbols:  | Splicing factor, CC1-like | chr2:73428...    49   3e-06
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like...    48   1e-05

>AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 |
           chr3:4849788-4851601 FORWARD LENGTH=327
          Length = 327

 Score =  332 bits (851), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 165/269 (61%), Positives = 197/269 (73%), Gaps = 3/269 (1%)

Query: 24  DSKPNLDSEFNMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSP-NPFLVXX 82
           DSK   +S  +M KLV +F KLNPLA+EF PS Y     +++     NQ+ P + F    
Sbjct: 39  DSKTETESRLDMHKLVAMFKKLNPLAKEFFPSYYDP--KKNNQVAKANQFLPADDFETTK 96

Query: 83  XXXKPLADDQYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEER 142
                  D                         + KAQREDS+RRTVYVSDIDQ VTEE 
Sbjct: 97  KQSGEEFDLDAKKDDNTRKRRNYSQGRRRLTGRISKAQREDSIRRTVYVSDIDQSVTEEG 156

Query: 143 LAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKT 202
           LA LF+ CG V+DCRICGDPHSVLRFAFVEFAD+ GA  AL+L GT+LG+YPVRVLPSKT
Sbjct: 157 LAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSLGGTMLGFYPVRVLPSKT 216

Query: 203 AILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVH 262
           AILPVNPTFLPRS+DEREMC+RT+YCTNIDKKVSQA+V+NFFE +CGEVTR+RLLGD +H
Sbjct: 217 AILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLH 276

Query: 263 STRIAFVEFAIAESAIIALSCSGMLLGTQ 291
           STRIAFVEFA+A+SA+ AL+CSGM++G+Q
Sbjct: 277 STRIAFVEFALADSALSALNCSGMVVGSQ 305



 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 127 RTVYVSDIDQHVTEERLAALF-TTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           RT+Y ++ID+ V++  +   F + CG V   R+ GD     R AFVEFA    A +ALN 
Sbjct: 238 RTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFALADSALSALNC 297

Query: 186 SGTVLGYYPVRVLPSKTAILP 206
           SG V+G  P+RV PSKT + P
Sbjct: 298 SGMVVGSQPIRVSPSKTPVRP 318


>AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 |
           chr1:20029262-20031243 REVERSE LENGTH=308
          Length = 308

 Score =  313 bits (801), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 157/269 (58%), Positives = 196/269 (72%), Gaps = 21/269 (7%)

Query: 24  DSKPNLDSEFN-MQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSPNPFLVXX 82
           D KP    E++ M+KLV +F KLNP A+EF PS      ++ + +Q       + F++  
Sbjct: 38  DLKPKSKPEYDQMKKLVAMFKKLNPEAKEFFPS------YKRNTNQS------DDFVIAI 85

Query: 83  XXXKPLADDQYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEER 142
              KP  +D                          KAQREDS+RRTVYVSDIDQ VTEE 
Sbjct: 86  ---KPSGEDN-----KKRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEG 137

Query: 143 LAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKT 202
           LA LF++CG V+DCRICGDP+SVLRFAFVEF+D+ GAR+AL+L GT++GYYPVRVLPSKT
Sbjct: 138 LAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKT 197

Query: 203 AILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVH 262
           AILPVNPTFLPRS+DEREMCSRT+YCTN+DK  ++ +V  FF+ +CGEVTR+RLLGD VH
Sbjct: 198 AILPVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVH 257

Query: 263 STRIAFVEFAIAESAIIALSCSGMLLGTQ 291
           STRIAFVEFA+AESA+ AL+CSG++LG+Q
Sbjct: 258 STRIAFVEFAMAESAVAALNCSGIVLGSQ 286



 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 127 RTVYVSDIDQHVTEERLAALF-TTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           RT+Y +++D++ TE+ +   F + CG V   R+ GD     R AFVEFA    A AALN 
Sbjct: 219 RTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAALNC 278

Query: 186 SGTVLGYYPVRVLPSKTAI 204
           SG VLG  P+RV PSKT +
Sbjct: 279 SGIVLGSQPIRVSPSKTPV 297


>AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 |
           chr1:20029262-20031243 REVERSE LENGTH=314
          Length = 314

 Score =  312 bits (799), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 157/270 (58%), Positives = 196/270 (72%), Gaps = 17/270 (6%)

Query: 24  DSKPNLDSEFN-MQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSPNPFLVXX 82
           D KP    E++ M+KLV +F KLNP A+EF PS      ++ + +Q       + F++  
Sbjct: 38  DLKPKSKPEYDQMKKLVAMFKKLNPEAKEFFPS------YKRNTNQS------DDFVIAI 85

Query: 83  XXXKPLADDQYPXXXXXXXXXXXXXXXXXXX-XXVLKAQREDSVRRTVYVSDIDQHVTEE 141
              KP  +D                           KAQREDS+RRTVYVSDIDQ VTEE
Sbjct: 86  ---KPSGEDNKKVAINRRRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEE 142

Query: 142 RLAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSK 201
            LA LF++CG V+DCRICGDP+SVLRFAFVEF+D+ GAR+AL+L GT++GYYPVRVLPSK
Sbjct: 143 GLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSK 202

Query: 202 TAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHV 261
           TAILPVNPTFLPRS+DEREMCSRT+YCTN+DK  ++ +V  FF+ +CGEVTR+RLLGD V
Sbjct: 203 TAILPVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQV 262

Query: 262 HSTRIAFVEFAIAESAIIALSCSGMLLGTQ 291
           HSTRIAFVEFA+AESA+ AL+CSG++LG+Q
Sbjct: 263 HSTRIAFVEFAMAESAVAALNCSGIVLGSQ 292



 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 127 RTVYVSDIDQHVTEERLAALF-TTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           RT+Y +++D++ TE+ +   F + CG V   R+ GD     R AFVEFA    A AALN 
Sbjct: 225 RTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAALNC 284

Query: 186 SGTVLGYYPVRVLPSKTAI 204
           SG VLG  P+RV PSKT +
Sbjct: 285 SGIVLGSQPIRVSPSKTPV 303


>AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 |
           chr1:11875028-11877188 REVERSE LENGTH=406
          Length = 406

 Score =  296 bits (757), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 146/257 (56%), Positives = 178/257 (69%), Gaps = 2/257 (0%)

Query: 34  NMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSPNPFLVXXXXXKPLADDQY 93
           +M++L ++F+KLNP+AEEF+P S                 S   F               
Sbjct: 82  DMRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGG--FFTSAGSFFRNNGFAGTGNGGYG 139

Query: 94  PXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSV 153
                                    AQRED +RRTVYVSD+DQ VTEE+LA LF +CG V
Sbjct: 140 NENGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQV 199

Query: 154 IDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPTFLP 213
           +DCRICGDP+SVLRFAF+EF DE GA  ALNLSGT+LG+YPV+VLPSKTAI PVNPTFLP
Sbjct: 200 VDCRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLP 259

Query: 214 RSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAI 273
           R++DEREMC+RT+YCTNIDKKV+Q++VK FFE  CGEV R+RLLGD+ HSTRIAFVEF +
Sbjct: 260 RTEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVM 319

Query: 274 AESAIIALSCSGMLLGT 290
           AESAI AL+CSG++LG+
Sbjct: 320 AESAIAALNCSGVVLGS 336



 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 127 RTVYVSDIDQHVTEERLAALFTT-CGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           RT+Y ++ID+ VT+  +   F + CG V   R+ GD     R AFVEF     A AALN 
Sbjct: 270 RTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAALNC 329

Query: 186 SGTVLGYYPVR 196
           SG VLG  P+R
Sbjct: 330 SGVVLGSLPIR 340


>AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 |
           chr1:11875174-11877188 REVERSE LENGTH=358
          Length = 358

 Score =  295 bits (756), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 146/257 (56%), Positives = 178/257 (69%), Gaps = 2/257 (0%)

Query: 34  NMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSPNPFLVXXXXXKPLADDQY 93
           +M++L ++F+KLNP+AEEF+P S                 S   F               
Sbjct: 82  DMRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGG--FFTSAGSFFRNNGFAGTGNGGYG 139

Query: 94  PXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSV 153
                                    AQRED +RRTVYVSD+DQ VTEE+LA LF +CG V
Sbjct: 140 NENGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQV 199

Query: 154 IDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPTFLP 213
           +DCRICGDP+SVLRFAF+EF DE GA  ALNLSGT+LG+YPV+VLPSKTAI PVNPTFLP
Sbjct: 200 VDCRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLP 259

Query: 214 RSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAI 273
           R++DEREMC+RT+YCTNIDKKV+Q++VK FFE  CGEV R+RLLGD+ HSTRIAFVEF +
Sbjct: 260 RTEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVM 319

Query: 274 AESAIIALSCSGMLLGT 290
           AESAI AL+CSG++LG+
Sbjct: 320 AESAIAALNCSGVVLGS 336



 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 127 RTVYVSDIDQHVTEERLAALFTT-CGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           RT+Y ++ID+ VT+  +   F + CG V   R+ GD     R AFVEF     A AALN 
Sbjct: 270 RTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAALNC 329

Query: 186 SGTVLGYYPVRVLPSKTAILPVNP 209
           SG VLG  P+RV PSKT + P +P
Sbjct: 330 SGVVLGSLPIRVSPSKTPVRPRSP 353


>AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 |
           chr3:18314901-18317658 REVERSE LENGTH=353
          Length = 353

 Score =  291 bits (744), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 148/264 (56%), Positives = 187/264 (70%), Gaps = 19/264 (7%)

Query: 30  DSEFNMQKLVDIFTKLNPLAEEFIPSSYA---AAAHRDHLHQGF-NQWSPNPFLVXXXXX 85
           D+   ++ L D F+KLNP+A+EF+P S A   +   R+ L  GF N ++  P L      
Sbjct: 82  DNNGEIKDLADAFSKLNPMAQEFVPPSLARSQSGVLRNGL--GFTNNFAAPPKLAD---- 135

Query: 86  KPLADDQYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEERLAA 145
               +D +P                        AQ++D +RRTVYVSDIDQ VTEE LA 
Sbjct: 136 ---GNDHFPRRRRSFGQGKRRMNKRTSL-----AQKDDVIRRTVYVSDIDQQVTEENLAG 187

Query: 146 LFTTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAIL 205
           +F  CG V+DCR+CGDP+SVLRFAF+EF +E GARAAL++SGTVLG+YP++VLPSKTAI 
Sbjct: 188 VFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAIA 247

Query: 206 PVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTR 265
           PVNPTFLPRS+DEREMC RTVYCTNIDK+++Q ++K FFE+ CGEV R+R LGD+ H TR
Sbjct: 248 PVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLR-LGDYHHQTR 306

Query: 266 IAFVEFAIAESAIIALSCSGMLLG 289
           IAFVEFA+AESAI AL CSG++LG
Sbjct: 307 IAFVEFAMAESAIAALHCSGIVLG 330



 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 55/91 (60%), Gaps = 6/91 (6%)

Query: 127 RTVYVSDIDQHVTEERLAALFTT-CGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           RTVY ++ID+ +T+  L   F   CG V   R+ GD H   R AFVEFA    A AAL+ 
Sbjct: 266 RTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAESAIAALHC 324

Query: 186 SGTVLGYYPVRVLPSKTAILPVNPTFLPRSD 216
           SG VLG  P+RV PSKT   PV P F PR++
Sbjct: 325 SGIVLGALPIRVSPSKT---PVRPHF-PRAE 351


>AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 |
           chr3:18314901-18317658 REVERSE LENGTH=353
          Length = 353

 Score =  291 bits (744), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 148/264 (56%), Positives = 187/264 (70%), Gaps = 19/264 (7%)

Query: 30  DSEFNMQKLVDIFTKLNPLAEEFIPSSYA---AAAHRDHLHQGF-NQWSPNPFLVXXXXX 85
           D+   ++ L D F+KLNP+A+EF+P S A   +   R+ L  GF N ++  P L      
Sbjct: 82  DNNGEIKDLADAFSKLNPMAQEFVPPSLARSQSGVLRNGL--GFTNNFAAPPKLAD---- 135

Query: 86  KPLADDQYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEERLAA 145
               +D +P                        AQ++D +RRTVYVSDIDQ VTEE LA 
Sbjct: 136 ---GNDHFPRRRRSFGQGKRRMNKRTSL-----AQKDDVIRRTVYVSDIDQQVTEENLAG 187

Query: 146 LFTTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAIL 205
           +F  CG V+DCR+CGDP+SVLRFAF+EF +E GARAAL++SGTVLG+YP++VLPSKTAI 
Sbjct: 188 VFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAIA 247

Query: 206 PVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTR 265
           PVNPTFLPRS+DEREMC RTVYCTNIDK+++Q ++K FFE+ CGEV R+R LGD+ H TR
Sbjct: 248 PVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLR-LGDYHHQTR 306

Query: 266 IAFVEFAIAESAIIALSCSGMLLG 289
           IAFVEFA+AESAI AL CSG++LG
Sbjct: 307 IAFVEFAMAESAIAALHCSGIVLG 330



 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 55/91 (60%), Gaps = 6/91 (6%)

Query: 127 RTVYVSDIDQHVTEERLAALFTT-CGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           RTVY ++ID+ +T+  L   F   CG V   R+ GD H   R AFVEFA    A AAL+ 
Sbjct: 266 RTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAESAIAALHC 324

Query: 186 SGTVLGYYPVRVLPSKTAILPVNPTFLPRSD 216
           SG VLG  P+RV PSKT   PV P F PR++
Sbjct: 325 SGIVLGALPIRVSPSKT---PVRPHF-PRAE 351


>AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 12 |
           chr4:6557336-6559019 FORWARD LENGTH=326
          Length = 326

 Score =  287 bits (735), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 145/259 (55%), Positives = 181/259 (69%), Gaps = 12/259 (4%)

Query: 34  NMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQ--WSPNPFLVXXXXXKPLADD 91
           +M++L ++ +KLNP+A+EFIP S         +  GFN   ++ N   V         D 
Sbjct: 65  DMRELHELLSKLNPMAKEFIPPSLTKP-----VVNGFNGGFFAVNNGFVAAGNFPVNEDG 119

Query: 92  QYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEERLAALFTTCG 151
            +                         AQRE+ +RRTVYVSDIDQ VTEE+LA LF   G
Sbjct: 120 SFRRKKSFGQQGKRRMNPRTSL-----AQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFG 174

Query: 152 SVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPTF 211
            V+DCRICGDP+SVLRFAF+EF DE GAR ALNLSGT+LG+YPV+V+PSKTAI PVNPTF
Sbjct: 175 QVVDCRICGDPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTF 234

Query: 212 LPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEF 271
           LPR++DEREMC+RT+YCTNIDKK++Q ++K FFE  CGEV R+RLLGD+ H TRI FVEF
Sbjct: 235 LPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEF 294

Query: 272 AIAESAIIALSCSGMLLGT 290
            +AESAI AL+CSG+LLG+
Sbjct: 295 VMAESAIAALNCSGVLLGS 313



 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 127 RTVYVSDIDQHVTEERLAALF-TTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           RT+Y ++ID+ +T+  +   F + CG V   R+ GD H   R  FVEF     A AALN 
Sbjct: 247 RTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIAALNC 306

Query: 186 SGTVLGYYPVR 196
           SG +LG  P+R
Sbjct: 307 SGVLLGSLPIR 317


>AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting
           domain 12 | chr4:6557336-6559143 FORWARD LENGTH=336
          Length = 336

 Score =  287 bits (734), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 145/259 (55%), Positives = 181/259 (69%), Gaps = 12/259 (4%)

Query: 34  NMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQ--WSPNPFLVXXXXXKPLADD 91
           +M++L ++ +KLNP+A+EFIP S         +  GFN   ++ N   V         D 
Sbjct: 65  DMRELHELLSKLNPMAKEFIPPSLTKP-----VVNGFNGGFFAVNNGFVAAGNFPVNEDG 119

Query: 92  QYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEERLAALFTTCG 151
            +                         AQRE+ +RRTVYVSDIDQ VTEE+LA LF   G
Sbjct: 120 SFRRKKSFGQQGKRRMNPRTSL-----AQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFG 174

Query: 152 SVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPTF 211
            V+DCRICGDP+SVLRFAF+EF DE GAR ALNLSGT+LG+YPV+V+PSKTAI PVNPTF
Sbjct: 175 QVVDCRICGDPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTF 234

Query: 212 LPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEF 271
           LPR++DEREMC+RT+YCTNIDKK++Q ++K FFE  CGEV R+RLLGD+ H TRI FVEF
Sbjct: 235 LPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEF 294

Query: 272 AIAESAIIALSCSGMLLGT 290
            +AESAI AL+CSG+LLG+
Sbjct: 295 VMAESAIAALNCSGVLLGS 313



 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 127 RTVYVSDIDQHVTEERLAALF-TTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           RT+Y ++ID+ +T+  +   F + CG V   R+ GD H   R  FVEF     A AALN 
Sbjct: 247 RTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIAALNC 306

Query: 186 SGTVLGYYPVRVLPSKTAILPVNPTFLPR 214
           SG +LG  P+RV PSKT   PV    +PR
Sbjct: 307 SGVLLGSLPIRVSPSKT---PVRSRAIPR 332


>AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 |
           chr5:8345402-8347776 REVERSE LENGTH=320
          Length = 320

 Score =  249 bits (635), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/259 (49%), Positives = 165/259 (63%), Gaps = 14/259 (5%)

Query: 31  SEFNMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSPNPFLVXXXXXKPLAD 90
           SE N++  +   + LNP+A+EF+PS  A   H +     F  W  N F            
Sbjct: 55  SEVNLKSEI---SHLNPMAKEFVPSFLAQTHHSEFWGNRF--WFTNHF----PKQTIFLI 105

Query: 91  DQYPXXXXXXXXXXXXXXXXXXXXXVLKAQREDSVRRTVYVSDIDQHVTEERLAALFTTC 150
            Q+                          Q ED ++RTVYVSDID  VTEE+LA+LF +C
Sbjct: 106 GQFATMRRNFGKGRPWITKKTNL-----VQNEDMIKRTVYVSDIDNQVTEEQLASLFLSC 160

Query: 151 GSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPT 210
           G V+DCR+CGD  S+LRFAF+EF D  GAR+AL  SGT+ G +P+RV  SKTAI PVNP+
Sbjct: 161 GQVVDCRMCGDYKSILRFAFIEFTDAEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPS 220

Query: 211 FLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVE 270
           FLP+S DE E C +TVYCTNIDK+V++ E++NFF+  CGEV  +RLLGD  H TRIAFVE
Sbjct: 221 FLPQSKDELEKCGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVE 280

Query: 271 FAIAESAIIALSCSGMLLG 289
           F +AESAI AL+CSG++LG
Sbjct: 281 FKLAESAISALNCSGVVLG 299



 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 127 RTVYVSDIDQHVTEERLAALF-TTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNL 185
           +TVY ++ID+ VT+  L   F T CG V   R+ GD +   R AFVEF     A +ALN 
Sbjct: 234 KTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAESAISALNC 293

Query: 186 SGTVLGYYPVRVLPSKTAI 204
           SG VLG  P+RV PSKT +
Sbjct: 294 SGVVLGELPIRVSPSKTPV 312



 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 220 EMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAII 279
           +M  RTVY ++ID +V++ ++ + F +SCG+V   R+ GD+    R AF+EF  AE A  
Sbjct: 133 DMIKRTVYVSDIDNQVTEEQLASLF-LSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARS 191

Query: 280 ALSCSGMLLGTQ 291
           AL  SG + G+ 
Sbjct: 192 ALRKSGTMFGSH 203


>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
           chr1:12433356-12434735 REVERSE LENGTH=407
          Length = 407

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 15/161 (9%)

Query: 124 SVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR-FAFVEFADEYGARAA 182
           S R  V+V ++D+ +  ++L  +F+  G V+ C++  D   V + + FV+F  +     A
Sbjct: 28  SGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTA 87

Query: 183 LNL-SGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVK 241
            N  +GT++    + V P           F+ R   ++      VY  N+ +  + A++K
Sbjct: 88  CNFHNGTLIRNQHIHVCP-----------FVSRGQWDKSRVFTNVYVKNLVETATDADLK 136

Query: 242 NFFEISCGEVTRIRLLGD-HVHSTRIAFVEFAIAESAIIAL 281
             F    GE+T   ++ D    S R  FV F  AE+A+ A+
Sbjct: 137 RLFG-EFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176


>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
           chr1:26990777-26993489 REVERSE LENGTH=682
          Length = 682

 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 15/164 (9%)

Query: 128 TVYVSDIDQHVTEERLAALFTTCGSVIDCRICGD-PHSVLRFAFVEFADEYGARAALNLS 186
           ++YV D+D  V E  L  LF     V + R+C D  H  L +A+V FA+   A  A+   
Sbjct: 60  SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAM--- 116

Query: 187 GTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEI 246
              L Y P+R  P +  +   +P+        R      V+  N+D  +    +   F  
Sbjct: 117 -ESLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDASIDNKALYETFS- 167

Query: 247 SCGEVTRIRLLGDHV-HSTRIAFVEFAIAESAIIAL-SCSGMLL 288
           S G +   ++  D V  S    FV+F   E+A  A+   +GMLL
Sbjct: 168 SFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLL 211


>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
           chr1:26990777-26993489 REVERSE LENGTH=682
          Length = 682

 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 15/164 (9%)

Query: 128 TVYVSDIDQHVTEERLAALFTTCGSVIDCRICGD-PHSVLRFAFVEFADEYGARAALNLS 186
           ++YV D+D  V E  L  LF     V + R+C D  H  L +A+V FA+   A  A+   
Sbjct: 60  SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAM--- 116

Query: 187 GTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEI 246
              L Y P+R  P +  +   +P+        R      V+  N+D  +    +   F  
Sbjct: 117 -ESLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDASIDNKALYETFS- 167

Query: 247 SCGEVTRIRLLGDHV-HSTRIAFVEFAIAESAIIAL-SCSGMLL 288
           S G +   ++  D V  S    FV+F   E+A  A+   +GMLL
Sbjct: 168 SFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLL 211


>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
           protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
          Length = 629

 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 18/166 (10%)

Query: 128 TVYVSDIDQHVTEERLAALFTTCGSVIDCRICGD--PHSVLRFAFVEFAD-EYGARAALN 184
           ++YV D+D +VT+ +L   F   G+V+  R+C D      L + +V F + +  ARA   
Sbjct: 37  SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96

Query: 185 LSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFF 244
           L+   L   P+RV+ S             R    R   +  ++  N+D+ +    + + F
Sbjct: 97  LNYIPLYGKPIRVMYSH------------RDPSVRRSGAGNIFIKNLDESIDHKALHDTF 144

Query: 245 EISCGEVTRIRLLGDHV-HSTRIAFVEFAIAESAIIAL-SCSGMLL 288
             S G +   ++  D    S    FV++A  ESA  A+   +GMLL
Sbjct: 145 S-SFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLL 189


>AT2G16940.2 | Symbols:  | Splicing factor, CC1-like |
           chr2:7342869-7347052 REVERSE LENGTH=610
          Length = 610

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 80/191 (41%), Gaps = 27/191 (14%)

Query: 118 KAQREDSV---------RRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR- 167
           K ++ED V         +RTV+   I    TE  +   F+  G V D RI  D  S    
Sbjct: 213 KDKKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSR 272

Query: 168 -FAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPT---------FLPRSDD 217
              +VEF D      A+ LSG  L   PV V PS+     V  T           P S  
Sbjct: 273 GIGYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSG- 331

Query: 218 EREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTR-IAFVEFAIAES 276
                +R +Y  N+   +S+ +++  FE S G V  +++  D     +   FV+FA  E 
Sbjct: 332 ----GARRLYVGNLHINMSEDDLRKVFE-SFGSVELVQVPRDETGLCKGFGFVQFARLED 386

Query: 277 AIIALSCSGML 287
           A  AL+ +G L
Sbjct: 387 ARNALNLNGQL 397


>AT2G16940.1 | Symbols:  | Splicing factor, CC1-like |
           chr2:7342869-7347052 REVERSE LENGTH=561
          Length = 561

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 74/174 (42%), Gaps = 18/174 (10%)

Query: 126 RRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLR--FAFVEFADEYGARAAL 183
           +RTV+   I    TE  +   F+  G V D RI  D  S       +VEF D      A+
Sbjct: 181 QRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI 240

Query: 184 NLSGTVLGYYPVRVLPSKTAILPVNPT---------FLPRSDDEREMCSRTVYCTNIDKK 234
            LSG  L   PV V PS+     V  T           P S       +R +Y  N+   
Sbjct: 241 ALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSG-----GARRLYVGNLHIN 295

Query: 235 VSQAEVKNFFEISCGEVTRIRLLGDHVHSTR-IAFVEFAIAESAIIALSCSGML 287
           +S+ +++  FE S G V  +++  D     +   FV+FA  E A  AL+ +G L
Sbjct: 296 MSEDDLRKVFE-SFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQL 348


>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
           | chr3:6404270-6407822 REVERSE LENGTH=636
          Length = 636

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 7/167 (4%)

Query: 127 RTVYVSDIDQHVTEERLAALFTTCGSVIDCRICG-DPHSVLRFAFVEFADEYGARAALNL 185
           +T++  ++   +    +   F   G V+D R+   D  S   +  +EFA    A+ AL +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEM 443

Query: 186 SGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFE 245
           +G +L    VR+  +     P N     + +  +   SRT+Y       + + E+K    
Sbjct: 444 NGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQ---SRTIYVRGFSSSLGEDEIKKELR 500

Query: 246 I---SCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSCSGMLLG 289
                CGEVTR+ +  D        F    +      AL  SG  +G
Sbjct: 501 SHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFDEALQLSGSEIG 547