Miyakogusa Predicted Gene

Lj3g3v0397400.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0397400.1 tr|G7ZWA9|G7ZWA9_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_038s0023 PE=4 SV=1,42.29,9.00054e-42,F_box_assoc_1:
F-box protein interaction domain,F-box associated interaction
domain,CUFF.40641.1
         (265 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    55   5e-08

>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD LENGTH=427
          Length = 427

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 45/247 (18%)

Query: 21  FCYDNSTNTYKVVYFRIDKTDRASHVQIFTLGGGSNGWRDIQNFPLLPFSYDDSGVNDGA 80
           F +D  T+ YK+V   +  ++      +++L   S  WR I N   L + ++D     G 
Sbjct: 216 FGFDGLTDDYKLVKL-VATSEDILDASVYSLKADS--WRRICN---LNYEHNDGSYTSGV 269

Query: 81  HLSGTINWMASRRDESAPHYNPETITVEQLVILSLDLGTETYTLLLPPKGLDQVPCVLPR 140
           H +G I+W+ +    +            Q V+++ D+ TE +  +  P   +        
Sbjct: 270 HFNGAIHWVFTESRHN------------QRVVVAFDIQTEEFREMPVPDEAEDCSHRFSN 317

Query: 141 --VWVFMDCLCFSHDSNKTHFVIWQMNKFGDAESWVQILKISYQDIPMRRLSPFTHHKEC 198
             V      LC  +     H  IW M+++G+A+SW +I      ++  R + P    K  
Sbjct: 318 FVVGSLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRI----RINLLYRSMKPLCSTK-- 371

Query: 199 FLHPLSYAYRLFYNGDTLVLAVGRQAILYKRSSNKIEQPTTTNREFCRYKFS-WYLALDY 257
                        N + ++L +    +LY   +N      ++N   C  K S  + A  Y
Sbjct: 372 -------------NDEEVLLELDGDLVLYNFETN-----ASSNLGICGVKLSDGFEANTY 413

Query: 258 VESLVSP 264
           VESL+SP
Sbjct: 414 VESLISP 420