Miyakogusa Predicted Gene
- Lj3g3v0397290.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0397290.1 tr|G7KLX9|G7KLX9_MEDTR F-box/kelch-repeat protein
OS=Medicago truncatula GN=MTR_6g055210 PE=4
SV=1,43.57,0,F_box_assoc_1: F-box protein interaction domain,F-box
associated interaction domain; seg,NULL,CUFF.40649.1
(268 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 55 3e-08
AT4G22390.1 | Symbols: | F-box associated ubiquitination effect... 55 5e-08
AT3G23880.1 | Symbols: | F-box and associated interaction domai... 53 2e-07
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ... 50 2e-06
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ... 50 2e-06
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD LENGTH=427
Length = 427
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 17/168 (10%)
Query: 7 SCRVDNNSFIKYNFGYDHSTNSYKVVKFVTTHLSNNVSIRIYILGDNVWRDIQNFPLLPL 66
S + ++F Y FG+D T+ YK+VK V T + + +Y L + WR I N L
Sbjct: 203 SVEYERDNFQTYGFGFDGLTDDYKLVKLVATS-EDILDASVYSLKADSWRRICN---LNY 258
Query: 67 HLNCIGLKFWVHLSGTLNWITSRNESASCYNRETITVEQLAILSLGLGTETCTLLSLPKG 126
N VH +G ++W+ + + Q +++ + TE + +P
Sbjct: 259 EHNDGSYTSGVHFNGAIHWVFTESRH-----------NQRVVVAFDIQTEEFREMPVPDE 307
Query: 127 FDEVPCVLPS--IGVLMDCLCFSHDLKKTHFVIWQMKKFGDAESWVQL 172
++ + +G L LC + H IW M ++G+A+SW ++
Sbjct: 308 AEDCSHRFSNFVVGSLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRI 355
>AT4G22390.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr4:11813757-11815074 REVERSE
LENGTH=402
Length = 402
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 38/183 (20%)
Query: 13 NSFIKYNFGYDHSTNSYKVVKFVTTHLSNN-------VSIRIYILGDNVWRDIQNFPLLP 65
++ Y GYD + +KVV+ V L V ++++ L N W+ + L
Sbjct: 135 REYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFSLKKNSWKRV----CLM 190
Query: 66 LHLNCIGLKFWVHL----------SGTLNWITSRNESASCYNRETITVEQLAILSLGLGT 115
+ + ++ HL + L+WI R + +N AI+ L +
Sbjct: 191 FEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFN---------AIIKYDLAS 241
Query: 116 ETCTLLSLPKGF---DEVPCVLPSIGVLMDCLCFSHDLKKTHFVIWQMKKFGDAESWVQL 172
+ +LS P+ D + IGVL C+C + +H +W +K++ D +SW +L
Sbjct: 242 DDIGVLSFPQELYIEDNM-----DIGVLDGCVCLMCYDEYSHVDVWVLKEYEDYKSWTKL 296
Query: 173 LKI 175
++
Sbjct: 297 YRV 299
>AT3G23880.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:8622061-8623155
REVERSE LENGTH=364
Length = 364
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 15/165 (9%)
Query: 11 DNNSFIKYNFGYDHSTNSYKVVKFVTTHLSNNVSIRIYILGDNVWRDIQNFPLLPLHLNC 70
D+ + Y FGYD S + YKVV + + +IY +WR +FP + +
Sbjct: 152 DDECVVTYGFGYDESEDDYKVVALLQQRHQVKIETKIYSTRQKLWRSNTSFPSGVVVAD- 210
Query: 71 IGLKFWVHLSGTLNWITSRNESASCYNRETITVEQLAILSLGLGTETCTLLSLPKGFDEV 130
+ ++++GTLNW + + S+ ++ ++ L G C +G
Sbjct: 211 -KSRSGIYINGTLNWAATSSSSSWTIISYDMSRDEFKELP---GPVCCG-----RG---- 257
Query: 131 PCVLPSIGVLMDCLCFSHDLKKTHFVIWQMKKFGDAESWVQLLKI 175
C ++G L CL K + +W MK+FG+ SW +LL I
Sbjct: 258 -CFTMTLGDLRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLLSI 301
>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 76/178 (42%), Gaps = 24/178 (13%)
Query: 13 NSFIKYNFGYDHSTNSYKVVKFVTTHLSNN--------VSIRIYILGDNVWRDIQNFP-- 62
++ Y GYD ++ YKVV+ V + + ++++ L N W+ I++
Sbjct: 135 RGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASS 194
Query: 63 ---LLPLHLNCIGLKFWVHLSG-TLNWITSRNESASCYNRETITVEQLAILSLGLGTETC 118
L + + + + + L+G +L+W+ R +N I+ L E
Sbjct: 195 IQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFN---------LIVRFDLALEEF 245
Query: 119 TLLSLPKGFDEVPC-VLPSIGVLMDCLCFSHDLKKTHFVIWQMKKFGDAESWVQLLKI 175
++ P+ + IGVL CLC + +++ +W MK++ +SW ++ +
Sbjct: 246 EIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTV 303
>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 76/178 (42%), Gaps = 24/178 (13%)
Query: 13 NSFIKYNFGYDHSTNSYKVVKFVTTHLSNN--------VSIRIYILGDNVWRDIQNFP-- 62
++ Y GYD ++ YKVV+ V + + ++++ L N W+ I++
Sbjct: 135 RGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASS 194
Query: 63 ---LLPLHLNCIGLKFWVHLSG-TLNWITSRNESASCYNRETITVEQLAILSLGLGTETC 118
L + + + + + L+G +L+W+ R +N I+ L E
Sbjct: 195 IQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFN---------LIVRFDLALEEF 245
Query: 119 TLLSLPKGFDEVPC-VLPSIGVLMDCLCFSHDLKKTHFVIWQMKKFGDAESWVQLLKI 175
++ P+ + IGVL CLC + +++ +W MK++ +SW ++ +
Sbjct: 246 EIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTV 303