Miyakogusa Predicted Gene

Lj3g3v0397220.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0397220.1 78744_g.1
         (279 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G28780.1 | Symbols:  | PIF1 helicase | chr5:10812907-10814173...   104   6e-23
AT3G51690.1 | Symbols:  | PIF1 helicase | chr3:19176731-19178107...    87   2e-17
AT3G51700.1 | Symbols:  | PIF1 helicase | chr3:19179443-19181145...    78   7e-15

>AT5G28780.1 | Symbols:  | PIF1 helicase | chr5:10812907-10814173
           REVERSE LENGTH=337
          Length = 337

 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 77/144 (53%)

Query: 135 ELIKYTYPDLAHKMKDPQFFQDRAILAPILEAVEMINTYMFGMIAAPEHEYLSSDSALRS 194
           ++ K  Y   +    + Q+  +R IL P  E V+ IN YM   +     EYLSS S  ++
Sbjct: 96  QVTKGAYVQFSVSQPNFQYLTERGILTPHNEYVDEINAYMLSQVGGDSKEYLSSYSIGKA 155

Query: 195 DEDSEIQGEWFTTEFLNDTKSSRMPNHKLLLKVGTPIMLLRNIDQAAGLCNGTRLIVDEL 254
           D         +  ++LN  +   +P HK+ LK G PIM +RN +Q  GLCNGTRLIV  L
Sbjct: 156 DTIGADYEALYHVKYLNSLEFPSLPKHKISLKKGVPIMQMRNFNQKEGLCNGTRLIVTNL 215

Query: 255 GERFIGATVITGTNVNDKVHILRM 278
           GE+ I A ++TGT+    V I R 
Sbjct: 216 GEQVIEAQIVTGTHAGKMVSIPRF 239


>AT3G51690.1 | Symbols:  | PIF1 helicase | chr3:19176731-19178107
           REVERSE LENGTH=331
          Length = 331

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 90/195 (46%), Gaps = 13/195 (6%)

Query: 86  TADEAKEIKDFADWILKIG--NGDHPDFGAGEYDVQXXXXXXXXXXXXXXMELIKYTYPD 143
           T DEA      + WI+ I   N ++P+ G  E D+                 L+K  Y +
Sbjct: 54  TIDEA-----LSRWIMNISGDNINNPNDGETEIDISKDLLITESKDPIKT--LLKEVYGE 106

Query: 144 LAHKMKDPQFFQDRAILAPILEAVEMINTYMFGMIAAPEHEYLSSDSALRSDEDSEIQGE 203
              K  +P F  D AIL    + V+ IN YM  ++   E E LS+DS   S  D      
Sbjct: 107 YFAKSYNPDFCHDSAILCHRDDDVDQINDYMLSLLPGEEKECLSTDSISPSPNDDM---- 162

Query: 204 WFTTEFLNDTKSSRMPNHKLLLKVGTPIMLLRNIDQAAGLCNGTRLIVDELGERFIGATV 263
           +   E LN  K   +P+ KL LKVG P+MLLR++D + G   GTRL +  L    + A +
Sbjct: 163 FVPLEVLNSIKVPGLPDFKLRLKVGAPVMLLRDLDPSRGFFTGTRLQITRLCGFLLEAMI 222

Query: 264 ITGTNVNDKVHILRM 278
           I G     K+ I R+
Sbjct: 223 IAGNKHGKKIWIPRI 237


>AT3G51700.1 | Symbols:  | PIF1 helicase | chr3:19179443-19181145
           REVERSE LENGTH=344
          Length = 344

 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 88/195 (45%), Gaps = 10/195 (5%)

Query: 86  TADEAKEIKDFADWILKIG--NGDHPDFGAGEYDVQXXXXXXXXXXXXXXMELIKYTYPD 143
           T DEA     F  WI  IG  N + P+ G  + D+                 ++   Y +
Sbjct: 55  TIDEA-----FTKWITNIGGENINKPNDGETKIDIHEDLLITECKDPIKT--IVDEVYGE 107

Query: 144 LAHKMKDPQFFQDRAILAPILEAVEMINTYMFGMIAAPEHEYLSSDSALRSDEDSEIQGE 203
              +  +P F+Q+RAIL    +  + IN YM   +   E +   +D+ +     S     
Sbjct: 108 SFTESYNPDFYQERAILCHTNDVADEINDYMLSQLQGEETKCYGADT-IYPTHASPNDKM 166

Query: 204 WFTTEFLNDTKSSRMPNHKLLLKVGTPIMLLRNIDQAAGLCNGTRLIVDELGERFIGATV 263
            +  EFLN  K    P+ KL LKVG P+MLLR++     L  GTRL +  +    + A +
Sbjct: 167 LYPLEFLNSIKIPGFPDFKLRLKVGAPVMLLRDLAPYGWLRKGTRLQITRVETFVLEAMI 226

Query: 264 ITGTNVNDKVHILRM 278
           ITG N  +KV I R+
Sbjct: 227 ITGNNHGEKVLIPRI 241