Miyakogusa Predicted Gene

Lj3g3v0397180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0397180.1 Non Chatacterized Hit- tr|I1KW60|I1KW60_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26515
PE,88.13,0,seg,NULL; coiled-coil,NULL; FAMILY NOT
NAMED,NULL,CUFF.40627.1
         (336 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16520.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   406   e-113
AT1G56080.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   371   e-103
AT4G15545.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   231   7e-61

>AT1G16520.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT1G56080.1); Has 243 Blast
           hits to 234 proteins in 69 species: Archae - 2; Bacteria
           - 2; Metazoa - 61; Fungi - 9; Plants - 125; Viruses - 0;
           Other Eukaryotes - 44 (source: NCBI BLink). |
           chr1:5648904-5650998 FORWARD LENGTH=325
          Length = 325

 Score =  406 bits (1043), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/329 (62%), Positives = 251/329 (76%), Gaps = 10/329 (3%)

Query: 9   VDFDLPDEILSVIPTDPYQQLDLARKITSMAIASRVSSLESDTTRLRQKLLEKDRLIVDL 68
           +DF+LP+E+LSVIP DP++QLDLARKITSMAIASRVS+L+S+   LRQKLL K+ ++ +L
Sbjct: 6   LDFELPEEVLSVIPMDPFEQLDLARKITSMAIASRVSNLDSEVVELRQKLLGKESVVREL 65

Query: 69  EDRVSSLTRASHNAHSALNTAIEENVKLSKERDELAATVKKLSRDFAKLETFKKQLMQSL 128
           E++ S L R    A S L   +E+N+ L+KE+D LA TV KL+RD AKLETFK+QL++SL
Sbjct: 66  EEKASRLERDCREADSRLKVVLEDNMNLTKEKDSLAMTVTKLTRDLAKLETFKRQLIKSL 125

Query: 129 ADDNPSQAETVDIRTCDQSVPKAYPDKDDDGSGYTTHHSYSGPADVGKTIDEATKYSGQR 188
           +D++  Q E VDIRTCDQ  P +YP KD   + ++   +YSG  D    + EA+KY+G +
Sbjct: 126 SDESGPQTEPVDIRTCDQ--PGSYPGKDGRINAHSIKQAYSGSTDTNNPVVEASKYTGNK 183

Query: 189 FSMTPFITPRLTPTGTPKVISTAGSPRGYSAAGSPK-TSGATSPTKLPYDGRXXXXXXXX 247
           FSMT +I+PRLTPT TPK+IST+ SPRGYSAAGSPK TSGA SPTK              
Sbjct: 184 FSMTSYISPRLTPTATPKIISTSVSPRGYSAAGSPKRTSGAVSPTK-------ATLWYPS 236

Query: 248 XXXXXXXXXPPRGRSIPGRTPKIDGKEFFRQARSRLSYEQFSAFLANIKELNAQKQTREE 307
                    PPR R++P RTP++DGKEFFRQARSRLSYEQFS+FLANIKELNAQKQTREE
Sbjct: 237 SQQSSAANSPPRNRTLPARTPRMDGKEFFRQARSRLSYEQFSSFLANIKELNAQKQTREE 296

Query: 308 TLRKADEIFGSDNKDLYLSFQGLLNRNVR 336
           TLRKADEIFG +NKDLYLSFQGLLNRN+R
Sbjct: 297 TLRKADEIFGEENKDLYLSFQGLLNRNMR 325


>AT1G56080.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT1G16520.1); Has 196 Blast
           hits to 193 proteins in 50 species: Archae - 2; Bacteria
           - 0; Metazoa - 9; Fungi - 2; Plants - 132; Viruses - 0;
           Other Eukaryotes - 51 (source: NCBI BLink). |
           chr1:20974457-20976215 REVERSE LENGTH=310
          Length = 310

 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/332 (60%), Positives = 235/332 (70%), Gaps = 27/332 (8%)

Query: 1   MSQGSGNGVDFDLPDEILSVIPTDPYQQLDLARKITSMAIASRVSSLESDTTRLRQKLLE 60
           MSQ  G   DF+L DEIL+VIPTDPY QLDLARKITSMAIASRVS+LES  + LRQKLLE
Sbjct: 1   MSQSGG---DFNLSDEILAVIPTDPYDQLDLARKITSMAIASRVSNLESQVSGLRQKLLE 57

Query: 61  KDRLIVDLEDRVSSLTRASHNAHSALNTAIEENVKLSKERDELAATVKKLSRDFAKLETF 120
           KDRL+ +LEDRVSS  R  H A S+L   ++EN+KL++ERD LA T KKL RD+AKLE F
Sbjct: 58  KDRLVHELEDRVSSFERLYHEADSSLKNVVDENMKLTQERDSLAITAKKLGRDYAKLEAF 117

Query: 121 KKQLMQSLADDNPSQAETVDIRTCDQSVPKAYPDKDDDGSGYTTHHSYSGPADVGKTIDE 180
           K+QLMQSL DDNPSQ ET D+R     VP+    KD++ +G     SYS         +E
Sbjct: 118 KRQLMQSLNDDNPSQTETADVRM----VPRG---KDENSNG-----SYSN--------NE 157

Query: 181 ATKYSGQRFSMTPFITPRLTPTGTPKVISTAGSPRGYSAAGSPKT-SGATSPTKLPYDGR 239
               + QR SMTP  +P  TP+GTPK++STA SPR YSAA SPK  SGA SPT   YD R
Sbjct: 158 GLSEARQRQSMTPQFSPAFTPSGTPKILSTAASPRSYSAASSPKLFSGAASPTSSHYDIR 217

Query: 240 XXXXXXXXXXXXXXXXXPPRGRSIPGRTPKIDGKEFFRQARSRLSYEQFSAFLANIKELN 299
                            PPR  S+  R P+IDGKEFFRQARSRLSYEQFSAFLANIKELN
Sbjct: 218 ---MWSSTSQQSSVANSPPRSHSVSARHPRIDGKEFFRQARSRLSYEQFSAFLANIKELN 274

Query: 300 AQKQTREETLRKADEIFGSDNKDLYLSFQGLL 331
           A+KQ REETL+KA+EIFG +N DLY+SF+GLL
Sbjct: 275 ARKQGREETLQKAEEIFGKENNDLYISFKGLL 306


>AT4G15545.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G16520.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:8875932-8877567 FORWARD LENGTH=337
          Length = 337

 Score =  231 bits (588), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 144/340 (42%), Positives = 203/340 (59%), Gaps = 40/340 (11%)

Query: 11  FDLPDEILSVIPTDPYQQLDLARKITSMAIASRVSSLESDTTRLRQKLLEKDRLIVDLED 70
           FDLPDE+L V+P+DP++QLD+ARKITS+A+++RVS+LES+++ LR+ L EK++   +L+ 
Sbjct: 22  FDLPDELLQVLPSDPFEQLDVARKITSIALSTRVSALESESSDLRELLAEKEKEFEELQS 81

Query: 71  RVSSLTRASHNAHSALNTAIEENVKLSKERDELAATVKKLSRDFAKLETFKKQLMQSLAD 130
            V SL  +  +A   L+ A  E   L +E   L+ TVK+L RD +KLE F+K LM SL D
Sbjct: 82  HVESLEASLSDAFHKLSLADGEKENLIRENASLSNTVKRLQRDVSKLEGFRKTLMMSLQD 141

Query: 131 DNPSQAETVDIRTCDQSVPKAYPDKDDDGSGYTTHHSYSGPADVGKTIDEA---TKYSGQ 187
           D+ +   T       Q + K  P+ DDD     + HS        + I+ A    +    
Sbjct: 142 DDQNAGTT-------QIIAKPTPN-DDDTPFQPSRHSSIQSQQASEAIEPAATDNENDAP 193

Query: 188 RFSMT---PFI----TPRLTPTGTPKVISTAGSPRGYSAAGSPKTSGAT-SPTKLPYDGR 239
           + S++   P +    TPRLTP G+P ++S +G+P+  S   SP+    + + T+  +D  
Sbjct: 194 KPSLSASLPLVSQTTTPRLTPPGSPPILSASGTPKTTSRPISPRRHSVSFATTRGMFDDT 253

Query: 240 XXXXXXXXXXXXXXXXXPPRGRSIPG----RTPKIDGKEFFRQARSRLSYEQFSAFLANI 295
                                 S PG    RT ++DGKEFFRQ RSRLSYEQF AFL N+
Sbjct: 254 RSSISI----------------SEPGSQTART-RVDGKEFFRQVRSRLSYEQFGAFLGNV 296

Query: 296 KELNAQKQTREETLRKADEIFGSDNKDLYLSFQGLLNRNV 335
           K+LNA KQTREETLRKA+EIFG DN+DLY+ F+GL+ RN 
Sbjct: 297 KDLNAHKQTREETLRKAEEIFGGDNRDLYVIFEGLITRNA 336