Miyakogusa Predicted Gene

Lj3g3v0370430.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0370430.1 tr|Q9FRR2|Q9FRR2_ARATH At1g08760 OS=Arabidopsis
thaliana GN=At1g08760 PE=2 SV=1,47.66,3e-19,seg,NULL; DUF936,Protein
of unknown function DUF936, plant,CUFF.40842.1
         (204 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08760.1 | Symbols:  | Plant protein of unknown function (DUF...   103   8e-23

>AT1G08760.1 | Symbols:  | Plant protein of unknown function
           (DUF936) | chr1:2805478-2808409 FORWARD LENGTH=748
          Length = 748

 Score =  103 bits (257), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 114/190 (60%), Gaps = 14/190 (7%)

Query: 23  FEKFANGVKQQQAKVSGKRVEKVTANXXXXXXXXXXXXXXXXXXXNP---IRNWMQGIDL 79
           F KFANG+KQQQ  V  K +EK +                          I+N++QGI+ 
Sbjct: 233 FAKFANGIKQQQT-VKPKLLEKGSPRMGLSEKGRSLLKAESPKVGKKLPMIKNFVQGIEF 291

Query: 80  GAKVLRKSWEGNMEVKTRESPRARGAA-KVDPKPEVRS-STPRRSFSNGKLPSKEVQAPT 137
           GAK LRKSWEGN+++  R S R + +  + D  P+ RS + PRRS S+ KLPSK+ +A  
Sbjct: 292 GAKALRKSWEGNLDI--RGSDRTKSSLPRRDLTPDSRSLAAPRRSTSSEKLPSKQERANV 349

Query: 138 --KSSKDEHKTQMSIKKATANGTLEEQEKSSKQR-TSIGKKSAEVANHGLPGNLVKVSLN 194
             +SSK+ +K Q S KK      L+ ++K+S+ + TS+ KKS  VA +GLPGNLVKVS+N
Sbjct: 350 FARSSKEHNKIQ-STKKVEPTAVLDTKDKTSRPKSTSVEKKS--VAENGLPGNLVKVSVN 406

Query: 195 SRKVTDASVQ 204
            +++  A++Q
Sbjct: 407 GKRLAAANIQ 416