Miyakogusa Predicted Gene

Lj3g3v0369360.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0369360.2 Non Chatacterized Hit- tr|A1ZWU4|A1ZWU4_9BACT
ProFAR isomerase associated, putative OS=Microscilla m,41.03,9e-19,no
description,ProFAR isomerase-like; ASCH,ASCH domain; PUA
domain-like,PUA-like domain,CUFF.40580.2
         (278 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43465.1 | Symbols:  | RNA-binding ASCH domain protein | chr2...   308   3e-84
AT3G03320.1 | Symbols:  | RNA-binding ASCH domain protein | chr3...   142   3e-34

>AT2G43465.1 | Symbols:  | RNA-binding ASCH domain protein |
           chr2:18047732-18049709 REVERSE LENGTH=388
          Length = 388

 Score =  308 bits (789), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 144/252 (57%), Positives = 190/252 (75%), Gaps = 3/252 (1%)

Query: 30  LPADGLKTIEGRCARGKHNRIEVG-NLILFNESLVFEVQGVRRYASFFDMLEAESLEKVL 88
           L  DG+KT+E RC   +++RI  G ++++ N+ L+FEV  + +YASF+++L+AES EKV 
Sbjct: 137 LMKDGIKTVEARCFEEEYDRIRRGGSMVMINKCLMFEVLELHQYASFYELLKAESSEKVF 196

Query: 89  PGVESVEEGVKVYRRFFTEEKERENGVLAIIFSKPALQPYISLASLFSGLKYEGVQGLLG 148
           PG ++VEEG++++R+ +  ++E  NGV+AI  SK   QP ++LA + SGL Y GVQ LLG
Sbjct: 197 PGTKTVEEGMQMFRKLYDTDQENFNGVVAIHLSKSVAQPCVALAHILSGLSYTGVQNLLG 256

Query: 149 IIHTRGTVPNALPPPRSSLLASFNLPCNPN--EISLSTGARALAKHAFRSSSGYWGSLDG 206
           + HT G++ +ALPPPRS LL+SF LP  P      LS GARALAKH  RSS G+WG L G
Sbjct: 257 LSHTTGSIFHALPPPRSMLLSSFMLPYKPKIKGCRLSHGARALAKHVDRSSDGFWGVLQG 316

Query: 207 NDSNKNRLAMNVINHLITHCCWLNIHIVPPHGGVFEIRVAEGYGARWTEDGSKFIGFLEP 266
            DS+KN  AM++IN  I +CCW+NIHIVPPHG VFEIRVA+GYGARW+ DG+KFIGFLEP
Sbjct: 317 TDSDKNERAMDIINRFIGNCCWMNIHIVPPHGEVFEIRVAQGYGARWSRDGTKFIGFLEP 376

Query: 267 YMQDGHSKGWKH 278
           YM+DGHS  WKH
Sbjct: 377 YMEDGHSMAWKH 388


>AT3G03320.1 | Symbols:  | RNA-binding ASCH domain protein |
           chr3:781872-783289 FORWARD LENGTH=244
          Length = 244

 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/115 (60%), Positives = 87/115 (75%)

Query: 33  DGLKTIEGRCARGKHNRIEVGNLILFNESLVFEVQGVRRYASFFDMLEAESLEKVLPGVE 92
           DGLKT+EGRCA G + RI  G+ +LFN+ L+ EVQ V RY SF +ML+ E L KVLPGVE
Sbjct: 121 DGLKTVEGRCAVGDYMRISSGDFLLFNKCLLLEVQDVHRYTSFSEMLKVEGLAKVLPGVE 180

Query: 93  SVEEGVKVYRRFFTEEKERENGVLAIIFSKPALQPYISLASLFSGLKYEGVQGLL 147
           S+EEGV+VYR F++EEKER NGV+AI  +KPA QP  +LA + S LK  G++ LL
Sbjct: 181 SIEEGVQVYRNFYSEEKERMNGVVAIRVAKPANQPSAALAGVLSELKSSGIKSLL 235