Miyakogusa Predicted Gene

Lj3g3v0339010.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0339010.1 Non Chatacterized Hit- tr|D5A923|D5A923_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,34.67,3e-18,seg,NULL,CUFF.40547.1
         (172 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43540.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   132   1e-31

>AT2G43540.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN: N-terminal
           protein myristoylation; LOCATED IN: cellular_component
           unknown; EXPRESSED IN: 22 plant structures; EXPRESSED
           DURING: 13 growth stages; Has 27 Blast hits to 27
           proteins in 12 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr2:18072385-18072894 FORWARD LENGTH=169
          Length = 169

 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 1   MGLGASKRVNNSLRNSSQFNSACDSAFTHCLSLTQHAYDGVLPYQLKTASDHIHTLLLSD 60
           MG+  SKRV   L NS +F+SACDSA+   LSL QHA+ GV PYQL +A+ HIH  L   
Sbjct: 1   MGISGSKRVTTILSNSPEFDSACDSAYDESLSLAQHAFAGVRPYQLVSAAAHIHRNL--S 58

Query: 61  TNPHPLIHKWVATPPDRSQVDSALRRVNHR------GETLGSAPFKDWAHELYTDAVVAG 114
               PLI +W+++PP +SQVDSALR    R       E LG   FK WA E++ +AVV  
Sbjct: 59  ALRFPLITRWLSSPPSQSQVDSALRVTVSRVTAADEEEILGQEEFKKWAVEVFAEAVVGN 118

Query: 115 AGKALMLRXXXXXXXXXXXXXLARPAPVVIGSFVGAYSLGVGISIFL 161
           A K +  R             + R    +IG+ +G Y++GV  S+FL
Sbjct: 119 ARKTIASRIPLGIVGIGGIGAVTRSGQNLIGAAIGVYAIGVATSVFL 165