Miyakogusa Predicted Gene

Lj3g3v0337760.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0337760.1 Non Chatacterized Hit- tr|D8QUQ0|D8QUQ0_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,41.53,3e-19,seg,NULL; Tim17,Mitochondrial inner membrane
translocase subunit Tim17/Tim22/Tim23/peroxisomal prote,CUFF.40637.1
         (188 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72750.1 | Symbols: ATTIM23-2, TIM23-2 | translocase inner me...   187   3e-48
AT1G17530.1 | Symbols: ATTIM23-1, TIM23-1 | translocase of inner...   182   1e-46
AT3G04800.1 | Symbols: ATTIM23-3, TIM23-3 | translocase inner me...   133   7e-32

>AT1G72750.1 | Symbols: ATTIM23-2, TIM23-2 | translocase inner
           membrane subunit 23-2 | chr1:27383577-27384143 FORWARD
           LENGTH=188
          Length = 188

 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/185 (52%), Positives = 116/185 (62%), Gaps = 3/185 (1%)

Query: 7   DHESNSDSNTPTRLYNPYKDLEVPIRN---LYQLPTSPEYLFVEEARRKRRSWGENLTFY 63
           ++ S+  S+  TRLYNPY++ EVPI     LY+LPTSPE+LF EEA R+RRSWGENLTFY
Sbjct: 4   NNRSDHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFY 63

Query: 64  TXXXXXXXXXXXXXXXXXXXXKSFETGDSVKLRVNRILNSSGHAGRSWGNRLGVIGLLYA 123
           T                    KSFE+GD+ KL++NRILNSSG  GR+WGNR+G+IGL+YA
Sbjct: 64  TGTAYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYA 123

Query: 124 GIESGIEAARDTDDVWNSVAAGLGTGALYXXXXXXXXXXXXXXXXXXXXXXXXXXKQALK 183
           GIESGI AA D DDVW SV AGLGTGA+                           KQ +K
Sbjct: 124 GIESGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVK 183

Query: 184 RYVPI 188
           RYVPI
Sbjct: 184 RYVPI 188


>AT1G17530.1 | Symbols: ATTIM23-1, TIM23-1 | translocase of inner
           mitochondrial membrane 23 | chr1:6027723-6028286 FORWARD
           LENGTH=187
          Length = 187

 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/187 (48%), Positives = 117/187 (62%), Gaps = 6/187 (3%)

Query: 4   QTPDHESNSDSNTPTRLYNPYKDLEVPIRN--LYQLPTSPEYLFVEEARRKRRSWGENLT 61
           ++ DHES+ +    TRLY+PY++ +VPI++  LY+LPTSPE+LF EE+ ++RRSWGENLT
Sbjct: 5   RSSDHESDEN----TRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLT 60

Query: 62  FYTXXXXXXXXXXXXXXXXXXXXKSFETGDSVKLRVNRILNSSGHAGRSWGNRLGVIGLL 121
           FYT                    KSFE GD+ KL++NRILNSSG AGR+WGNR+G++GL+
Sbjct: 61  FYTGTGYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLI 120

Query: 122 YAGIESGIEAARDTDDVWNSVAAGLGTGALYXXXXXXXXXXXXXXXXXXXXXXXXXXKQA 181
           YAGIESG+ A  D DDVW SV AGLGTGA++                          KQ 
Sbjct: 121 YAGIESGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQV 180

Query: 182 LKRYVPI 188
            KRY  I
Sbjct: 181 FKRYAHI 187


>AT3G04800.1 | Symbols: ATTIM23-3, TIM23-3 | translocase inner
           membrane subunit 23-3 | chr3:1314479-1315045 REVERSE
           LENGTH=188
          Length = 188

 Score =  133 bits (334), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 96/183 (52%), Gaps = 1/183 (0%)

Query: 7   DHESNSDSNTPTRLYNPYKDLEVPIRNLYQLPTSPEYLFVEEARRKRRSWGENLTFYTXX 66
           +H +        R YNPY+ + +P R LY+LPTSPE+LF EEA +KR +WGENLTF+T  
Sbjct: 6   NHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGW 65

Query: 67  XXXXXXXXXXXXXXXXXXKSFETGDSVKLRVNRILNSSGHAGRSWGNRLGVIGLLYAGIE 126
                             ++ E G+S+K+R NRILNS G   R  GN LG +GL++A +E
Sbjct: 66  GYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAME 125

Query: 127 SGIEAARDTDD-VWNSVAAGLGTGALYXXXXXXXXXXXXXXXXXXXXXXXXXXKQALKRY 185
           SG+   RD DD    +V AGL TG LY                          ++ +KR+
Sbjct: 126 SGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKRF 185

Query: 186 VPI 188
           VPI
Sbjct: 186 VPI 188