Miyakogusa Predicted Gene

Lj3g3v0311080.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0311080.1 Non Chatacterized Hit- tr|B9S0S2|B9S0S2_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,33.51,5e-19,LEA_2,Late embryogenesis abundant protein, LEA-14;
seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NA,CUFF.40505.1
         (256 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G17620.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...   131   4e-31
AT5G11890.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    98   5e-21
AT2G27080.2 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    64   1e-10
AT2G27080.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    64   1e-10
AT5G36970.1 | Symbols: NHL25 | NDR1/HIN1-like 25 | chr5:14604367...    60   2e-09
AT1G65690.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    58   5e-09

>AT1G17620.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr1:6062313-6063107 FORWARD LENGTH=264
          Length = 264

 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/232 (40%), Positives = 112/232 (48%), Gaps = 9/232 (3%)

Query: 31  QLYGANRPAYRPQP--LHXXXXXXXXXXXXXWXXXXXXXXXXXXGGAGVAFYLLYRPHHP 88
           QLY ANRPAYRP                   W              A    YL+YRP  P
Sbjct: 33  QLYNANRPAYRPPAGRRRTSHTRGCCCRCCCWTIFVIILLLLIVAAASAVVYLIYRPQRP 92

Query: 89  TFSVXXXXXXXXXXXXXXXXXXKFDLTVAATNPNKKNIAFSYLPTSITILSG------DV 142
           +F+V                     L+V A NPNK N+ F Y  T IT+         DV
Sbjct: 93  SFTVSELKISTLNFTSAVRLTTAISLSVIARNPNK-NVGFIYDVTDITLYKASTGGDDDV 151

Query: 143 DVGDGTIPTFHHGKKNTTLLKSSISSSGHEXXXXXXXXXXXXXXXXNGLPLKVKLDTKVK 202
            +G GTI  F HGKKNTT L+S+I S   E                  + +K+ L++KVK
Sbjct: 152 VIGKGTIAAFSHGKKNTTTLRSTIGSPPDELDEISAGKLKGDLKAKKAVAIKIVLNSKVK 211

Query: 203 ATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRFKIWKWT 254
             MG LKTP+ GIRV+C+GI+V  PTGKK  TA+TS AKC VD RFKIWK T
Sbjct: 212 VKMGALKTPKSGIRVTCEGIKVVAPTGKKATTATTSAAKCKVDPRFKIWKIT 263


>AT5G11890.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant
           structures; EXPRESSED DURING: 6 growth stages; BEST
           Arabidopsis thaliana protein match is: Late
           embryogenesis abundant (LEA) hydroxyproline-rich
           glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast
           hits to 1807 proteins in 277 species: Archae - 0;
           Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
           Viruses - 0; Other Eukaryotes - 339 (source: NCBI
           BLink). | chr5:3831770-3832633 FORWARD LENGTH=287
          Length = 287

 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 102/240 (42%), Gaps = 17/240 (7%)

Query: 31  QLY-GANRPAYRPQPLHXX-------XXXXXXXXXXXWXXXXXXXXXXXXGGAGVAFYLL 82
           Q+Y  ANRP YRPQP                      W              A  A Y++
Sbjct: 48  QVYIPANRPVYRPQPYSRRHHHQSRPSCRRICCCCCFWSILIILILALMTAIAATAMYVI 107

Query: 83  YRPHHPTFSVXXXXXXXXXXXXXXXXXXK-----FDLTVAATNPNKKNIAFSYLPTSITI 137
           Y P  P+FSV                        F+ T+ + NPN+ +++FSY P ++T+
Sbjct: 108 YHPRPPSFSVPSIRISRVNLTTSSDSSVSHLSSFFNFTLISENPNQ-HLSFSYDPFTVTV 166

Query: 138 LSGD--VDVGDGTIPTFHHGKKNTTLLKSSISSSGHEXXXXXXXXXXXXXXXXNG-LPLK 194
            S      +G+GT+P F     N T     I++S                      +  +
Sbjct: 167 NSAKSGTMLGNGTVPAFFSDNGNKTSFHGVIATSTAARELDPDEAKHLRSDLTRARVGYE 226

Query: 195 VKLDTKVKATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRFKIWKWT 254
           +++ TKVK  MGKLK+  V I+V+C+G   T+P GK P  A++   KC  D+  K+WKW+
Sbjct: 227 IEMRTKVKMIMGKLKSEGVEIKVTCEGFEGTIPKGKTPIVATSKKTKCKSDLSVKVWKWS 286


>AT2G27080.2 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr2:11566383-11567165 FORWARD LENGTH=260
          Length = 260

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 75  AGVAF---YLLYRPHHPTFSVXXXXXXXXXXXXXXXXXXKFDLTVAATNPNKKNIAFSYL 131
           AG++F   YL+YRP  P +S+                   F++TV + N N K   +   
Sbjct: 89  AGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSRNGNGKIGVYYEK 148

Query: 132 PTSITILSGDVDVGDGTIPTFHHGKKNTTLLKSSISSSGHEXXXXXXXXXXXXXXXXNGL 191
            +S+ +   DVD+ +G +P F+   KN T++K  +S S  +                  +
Sbjct: 149 ESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKT-V 207

Query: 192 PLKVKLDTKVKATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDV 246
           P K+K+   VK   G +KT  + + V CD     +   K  A +   + KC+ DV
Sbjct: 208 PFKLKIKAPVKIKFGSVKTWTMIVNVDCD-----VTVDKLTAPSRIVSRKCSHDV 257


>AT2G27080.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr2:11566383-11567165 FORWARD LENGTH=260
          Length = 260

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 75  AGVAF---YLLYRPHHPTFSVXXXXXXXXXXXXXXXXXXKFDLTVAATNPNKKNIAFSYL 131
           AG++F   YL+YRP  P +S+                   F++TV + N N K   +   
Sbjct: 89  AGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSRNGNGKIGVYYEK 148

Query: 132 PTSITILSGDVDVGDGTIPTFHHGKKNTTLLKSSISSSGHEXXXXXXXXXXXXXXXXNGL 191
            +S+ +   DVD+ +G +P F+   KN T++K  +S S  +                  +
Sbjct: 149 ESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKT-V 207

Query: 192 PLKVKLDTKVKATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDV 246
           P K+K+   VK   G +KT  + + V CD     +   K  A +   + KC+ DV
Sbjct: 208 PFKLKIKAPVKIKFGSVKTWTMIVNVDCD-----VTVDKLTAPSRIVSRKCSHDV 257


>AT5G36970.1 | Symbols: NHL25 | NDR1/HIN1-like 25 |
           chr5:14604367-14605194 REVERSE LENGTH=248
          Length = 248

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 8/173 (4%)

Query: 79  FYLLYRPHHPTFSVXXXXXXXXXXXXXXXXXXKFDLTVAATNPNKKNIAFSYLPTSITIL 138
            YL++RP  P +++                   F++T+ A NPN+K   +    + I++L
Sbjct: 83  LYLVFRPKFPDYNIDRLQLTRFQLNQDLSLSTAFNVTITAKNPNEKIGIYYEDGSKISVL 142

Query: 139 SGDVDVGDGTIPTFHHGKKNTTLLKSSISSSGHEXXXXXXXXXXXXXXXXNG-LPLKVKL 197
                + +G++P F+ G +NTT++   +  +G                   G +PL++++
Sbjct: 143 YMQTRISNGSLPKFYQGHENTTII--LVEMTGFTQNATSLMTTLQEQQRLTGSIPLRIRV 200

Query: 198 DTKVKATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRFKI 250
              V+  +GKLK  +V   V C G+ V            +SN K     RF++
Sbjct: 201 TQPVRIKLGKLKLMKVRFLVRC-GVSVDSLAANSVIRVRSSNCK----YRFRL 248


>AT1G65690.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr1:24431642-24432898 REVERSE LENGTH=252
          Length = 252

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 5/176 (2%)

Query: 74  GAGVA-FYLLYRPHHPTFSVXXXXXXXXXXXXXXXXXXKFDLTVAATNPNKKNIAFSYLP 132
           GA +   YL+++P  P +S+                   F++T+ A NPN+K   +    
Sbjct: 81  GASIGILYLVFKPKLPDYSIDRLQLTRFALNQDSSLTTAFNVTITAKNPNEKIGIYYEDG 140

Query: 133 TSITILSGDVDVGDGTIPTFHHGKKNTTLLKSSISSSGHEXXXXXXXXXXXXXXXXNGLP 192
           + IT+   +  + +G++P F+ G +NTT++   ++                     N +P
Sbjct: 141 SKITVWYMEHQLSNGSLPKFYQGHENTTVIYVEMTGQTQNASGLRTTLEEQQQRTGN-IP 199

Query: 193 LKVKLDTKVKATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNAKCNVDVRF 248
           L+++++  V+   GKLK   V   V C     +L T       S+S   C   +R 
Sbjct: 200 LRIRVNQPVRVKFGKLKLFEVRFLVRCGVFVDSLATNNVIKIQSSS---CKFRLRL 252