Miyakogusa Predicted Gene
- Lj3g3v0306870.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0306870.1 tr|A2Q465|A2Q465_MEDTR DEAD-box ATP-dependent RNA
helicase OS=Medicago truncatula GN=MTR_040s0046
PE,95.36,0,DEAD_ATP_HELICASE,RNA helicase, ATP-dependent, DEAD-box,
conserved site; DEAD-like helicases
superfa,NODE_25139_length_1789_cov_141.628845.path2.1
(431 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 737 0.0
AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosph... 618 e-177
AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosph... 546 e-156
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 427 e-120
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 427 e-120
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 427 e-120
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 427 e-120
AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |... 419 e-117
AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |... 414 e-116
AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |... 386 e-107
AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosph... 360 1e-99
AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosph... 359 2e-99
AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosph... 357 7e-99
AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family ... 343 2e-94
AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosph... 319 2e-87
AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosph... 306 1e-83
AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosph... 305 5e-83
AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family prote... 301 4e-82
AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 301 4e-82
AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 301 4e-82
AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 286 1e-77
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 283 2e-76
AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosph... 282 3e-76
AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor ... 229 4e-60
AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosph... 228 7e-60
AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 223 2e-58
AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 222 3e-58
AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 222 3e-58
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA ... 222 3e-58
AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosph... 221 8e-58
AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosph... 221 8e-58
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA... 221 1e-57
AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 213 2e-55
AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 211 1e-54
AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 | ch... 204 7e-53
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 196 4e-50
AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 195 4e-50
AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 195 5e-50
AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | c... 195 6e-50
AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosph... 194 8e-50
AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides,... 193 2e-49
AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 191 6e-49
AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiatio... 191 8e-49
AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 187 1e-47
AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 187 1e-47
AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosph... 187 1e-47
AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 187 1e-47
AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 185 5e-47
AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 184 8e-47
AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 183 2e-46
AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 183 2e-46
AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 183 2e-46
AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosph... 181 1e-45
AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 179 3e-45
AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 177 1e-44
AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 173 2e-43
AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 173 2e-43
AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosph... 167 2e-41
AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 165 4e-41
AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWAR... 164 8e-41
AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosph... 162 5e-40
AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosph... 161 7e-40
AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase... 161 1e-39
AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family prot... 153 3e-37
AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 152 3e-37
AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 152 4e-37
AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 151 8e-37
AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosph... 150 1e-36
AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleos... 149 4e-36
AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside triph... 144 1e-34
AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 142 6e-34
AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 136 2e-32
AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 135 5e-32
AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosph... 132 5e-31
AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosph... 125 5e-29
AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosph... 121 1e-27
AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 | chr4:900142... 95 1e-19
AT2G28600.1 | Symbols: | P-loop containing nucleoside triphosph... 75 9e-14
AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 70 2e-12
AT5G19210.1 | Symbols: | P-loop containing nucleoside triphosph... 70 4e-12
AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase (... 66 6e-11
AT4G35740.1 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helic... 64 2e-10
AT1G31360.1 | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2... 60 4e-09
AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicase... 59 7e-09
AT1G27880.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 59 9e-09
AT3G05740.1 | Symbols: RECQI1 | RECQ helicase l1 | chr3:1698180-... 50 4e-06
AT4G35740.2 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helic... 49 9e-06
>AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:20574634-20577141 FORWARD LENGTH=501
Length = 501
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/433 (83%), Positives = 390/433 (90%), Gaps = 6/433 (1%)
Query: 1 MTEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPM 60
MT+ EV+EYR REITVEG+D+PKPVK+F DVGFP+YVLEEVKKAGF EPTPIQSQGWPM
Sbjct: 73 MTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPM 132
Query: 61 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEC 120
A+KGRDLIGIAETGSGKTL+YLLPAIVHVNAQP+L GDGPIVLVLAPTRELAVQIQQE
Sbjct: 133 AMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEA 192
Query: 121 TKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVL 180
+KFG+SS+IK+TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM+ES++TNLRRVTYLVL
Sbjct: 193 SKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVL 252
Query: 181 DEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDL 240
DEADRMLDMGFDPQIRKIVS IRPDRQTLYWSATWPKEVEQL++KFLY+PYKVIIGS DL
Sbjct: 253 DEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDL 312
Query: 241 KANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL 300
KAN AI+Q VD++ E QKY+KLVKLLEDIMDGSRIL+F+DTKKGCDQITRQLRMDGWPAL
Sbjct: 313 KANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPAL 372
Query: 301 SIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXX 360
SIHGDKSQAERDWVLSEF+SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH
Sbjct: 373 SIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRI 432
Query: 361 XXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPDLAAMGRG-APPPPS-GGFR 418
FFT ANARFAKEL IL+EAGQ+VSP+LA+MGR APPPP GGFR
Sbjct: 433 GRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELASMGRSTAPPPPGLGGFR 492
Query: 419 DRGKGYGSGRPWS 431
DR GS R WS
Sbjct: 493 DR----GSRRGWS 501
>AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25318967-25322071
REVERSE LENGTH=591
Length = 591
Score = 618 bits (1594), Expect = e-177, Method: Compositional matrix adjust.
Identities = 293/407 (71%), Positives = 343/407 (84%)
Query: 1 MTEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPM 60
MTE +V YR R+I+VEGRDVPKP+K F D FP+ +LE + K GF EPTPIQ+QGWPM
Sbjct: 139 MTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPM 198
Query: 61 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEC 120
ALKGRDLIGIAETGSGKTLAYLLPA+VHV+AQP L DGPIVL+LAPTRELAVQIQ+E
Sbjct: 199 ALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEES 258
Query: 121 TKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVL 180
KFG S ++STCIYGG PKGPQ+RDL++GVEIVIATPGRLIDMLE HTNL+RVTYLVL
Sbjct: 259 RKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVL 318
Query: 181 DEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDL 240
DEADRMLDMGF+PQIRKIVSQIRPDRQTL WSATWP+EVE LAR+FL DPYK IIGS DL
Sbjct: 319 DEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDL 378
Query: 241 KANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL 300
KAN +I Q ++IVP +KY++L+ LL+ +MDGS+ILIF++TK+GCDQ+TRQLRMDGWPAL
Sbjct: 379 KANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPAL 438
Query: 301 SIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXX 360
+IHGDK+Q+ERD VL+EFKSG+SPIMTATDVAARGLDVKD+K V+NYDFP +LEDY+H
Sbjct: 439 AIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRI 498
Query: 361 XXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPDLAAMGR 407
FFT NA+FA+EL+ IL+EAGQ V P L+A+ R
Sbjct: 499 GRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTLSALVR 545
>AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25319798-25322071
REVERSE LENGTH=484
Length = 484
Score = 546 bits (1408), Expect = e-156, Method: Compositional matrix adjust.
Identities = 257/336 (76%), Positives = 297/336 (88%)
Query: 1 MTEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPM 60
MTE +V YR R+I+VEGRDVPKP+K F D FP+ +LE + K GF EPTPIQ+QGWPM
Sbjct: 139 MTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPM 198
Query: 61 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEC 120
ALKGRDLIGIAETGSGKTLAYLLPA+VHV+AQP L DGPIVL+LAPTRELAVQIQ+E
Sbjct: 199 ALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEES 258
Query: 121 TKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVL 180
KFG S ++STCIYGG PKGPQ+RDL++GVEIVIATPGRLIDMLE HTNL+RVTYLVL
Sbjct: 259 RKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVL 318
Query: 181 DEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDL 240
DEADRMLDMGF+PQIRKIVSQIRPDRQTL WSATWP+EVE LAR+FL DPYK IIGS DL
Sbjct: 319 DEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDL 378
Query: 241 KANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL 300
KAN +I Q ++IVP +KY++L+ LL+ +MDGS+ILIF++TK+GCDQ+TRQLRMDGWPAL
Sbjct: 379 KANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPAL 438
Query: 301 SIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGL 336
+IHGDK+Q+ERD VL+EFKSG+SPIMTATDVAARGL
Sbjct: 439 AIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGL 474
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=618
Length = 618
Score = 427 bits (1098), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/407 (52%), Positives = 284/407 (69%), Gaps = 5/407 (1%)
Query: 2 TEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMA 61
+E + Y R EITV G VP P+ +F GFP +L EV AGF PTPIQ+Q WP+A
Sbjct: 133 SELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIA 192
Query: 62 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPIL-DPGDGPIVLVLAPTRELAVQIQQEC 120
++GRD++ IA+TGSGKTL YL+P +H+ Q I D GP +LVL+PTRELA QIQ+E
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHL--QRIRNDSRMGPTILVLSPTRELATQIQEEA 250
Query: 121 TKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVL 180
KFG SSRI TC+YGG PKGPQ+RDL++G +IV+ATPGRL D+LE +LR+++YLVL
Sbjct: 251 VKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVL 310
Query: 181 DEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSED- 239
DEADRMLDMGF+PQIRKIV +I RQTL ++ATWPK V ++A L +P +V IG+ D
Sbjct: 311 DEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDE 370
Query: 240 LKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPA 299
L AN +I Q++++V +K +L ++L GS+++IF TK+ CDQ+TR L + A
Sbjct: 371 LVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGA 429
Query: 300 LSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHX 359
+IHGDKSQ ERD VL++F+SG++P++ ATDVAARGLDVKD++ V+NYDFP +EDYVH
Sbjct: 430 AAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHR 489
Query: 360 XXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPDLAAMG 406
FF +++ A +LI ILE A QRV P + M
Sbjct: 490 IGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/407 (52%), Positives = 284/407 (69%), Gaps = 5/407 (1%)
Query: 2 TEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMA 61
+E + Y R EITV G VP P+ +F GFP +L EV AGF PTPIQ+Q WP+A
Sbjct: 133 SELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIA 192
Query: 62 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPIL-DPGDGPIVLVLAPTRELAVQIQQEC 120
++GRD++ IA+TGSGKTL YL+P +H+ Q I D GP +LVL+PTRELA QIQ+E
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHL--QRIRNDSRMGPTILVLSPTRELATQIQEEA 250
Query: 121 TKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVL 180
KFG SSRI TC+YGG PKGPQ+RDL++G +IV+ATPGRL D+LE +LR+++YLVL
Sbjct: 251 VKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVL 310
Query: 181 DEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSED- 239
DEADRMLDMGF+PQIRKIV +I RQTL ++ATWPK V ++A L +P +V IG+ D
Sbjct: 311 DEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDE 370
Query: 240 LKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPA 299
L AN +I Q++++V +K +L ++L GS+++IF TK+ CDQ+TR L + A
Sbjct: 371 LVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGA 429
Query: 300 LSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHX 359
+IHGDKSQ ERD VL++F+SG++P++ ATDVAARGLDVKD++ V+NYDFP +EDYVH
Sbjct: 430 AAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHR 489
Query: 360 XXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPDLAAMG 406
FF +++ A +LI ILE A QRV P + M
Sbjct: 490 IGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/407 (52%), Positives = 284/407 (69%), Gaps = 5/407 (1%)
Query: 2 TEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMA 61
+E + Y R EITV G VP P+ +F GFP +L EV AGF PTPIQ+Q WP+A
Sbjct: 133 SELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIA 192
Query: 62 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPIL-DPGDGPIVLVLAPTRELAVQIQQEC 120
++GRD++ IA+TGSGKTL YL+P +H+ Q I D GP +LVL+PTRELA QIQ+E
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHL--QRIRNDSRMGPTILVLSPTRELATQIQEEA 250
Query: 121 TKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVL 180
KFG SSRI TC+YGG PKGPQ+RDL++G +IV+ATPGRL D+LE +LR+++YLVL
Sbjct: 251 VKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVL 310
Query: 181 DEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSED- 239
DEADRMLDMGF+PQIRKIV +I RQTL ++ATWPK V ++A L +P +V IG+ D
Sbjct: 311 DEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDE 370
Query: 240 LKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPA 299
L AN +I Q++++V +K +L ++L GS+++IF TK+ CDQ+TR L + A
Sbjct: 371 LVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGA 429
Query: 300 LSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHX 359
+IHGDKSQ ERD VL++F+SG++P++ ATDVAARGLDVKD++ V+NYDFP +EDYVH
Sbjct: 430 AAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHR 489
Query: 360 XXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPDLAAMG 406
FF +++ A +LI ILE A QRV P + M
Sbjct: 490 IGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/407 (52%), Positives = 284/407 (69%), Gaps = 5/407 (1%)
Query: 2 TEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMA 61
+E + Y R EITV G VP P+ +F GFP +L EV AGF PTPIQ+Q WP+A
Sbjct: 133 SELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIA 192
Query: 62 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPIL-DPGDGPIVLVLAPTRELAVQIQQEC 120
++GRD++ IA+TGSGKTL YL+P +H+ Q I D GP +LVL+PTRELA QIQ+E
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHL--QRIRNDSRMGPTILVLSPTRELATQIQEEA 250
Query: 121 TKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVL 180
KFG SSRI TC+YGG PKGPQ+RDL++G +IV+ATPGRL D+LE +LR+++YLVL
Sbjct: 251 VKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVL 310
Query: 181 DEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSED- 239
DEADRMLDMGF+PQIRKIV +I RQTL ++ATWPK V ++A L +P +V IG+ D
Sbjct: 311 DEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDE 370
Query: 240 LKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPA 299
L AN +I Q++++V +K +L ++L GS+++IF TK+ CDQ+TR L + A
Sbjct: 371 LVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGA 429
Query: 300 LSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHX 359
+IHGDKSQ ERD VL++F+SG++P++ ATDVAARGLDVKD++ V+NYDFP +EDYVH
Sbjct: 430 AAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHR 489
Query: 360 XXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPDLAAMG 406
FF +++ A +LI ILE A QRV P + M
Sbjct: 490 IGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |
chr3:1985697-1989666 REVERSE LENGTH=1088
Length = 1088
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/401 (51%), Positives = 279/401 (69%), Gaps = 9/401 (2%)
Query: 6 VDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGR 65
V+ YR + E+T G ++P P TF G P +L E+ AGF PTPIQ+Q WP+AL+ R
Sbjct: 414 VEIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSR 473
Query: 66 DLIGIAETGSGKTLAYLLPAIV---HVNAQPILDPGDGPIVLVLAPTRELAVQIQQECTK 122
D++ IA+TGSGKTL YL+PA + H D +GP VL+LAPTRELA QIQ E +
Sbjct: 474 DIVAIAKTGSGKTLGYLIPAFILLRHCRN----DSRNGPTVLILAPTRELATQIQDEALR 529
Query: 123 FGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDE 182
FG SSRI TC+YGG PKGPQ+++L++G +IV+ATPGRL D+LE + ++V+ LVLDE
Sbjct: 530 FGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDE 589
Query: 183 ADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSED-LK 241
ADRMLDMGF+PQIRKIV++I P RQTL ++ATWPKEV ++A L +P +V IG D L
Sbjct: 590 ADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELA 649
Query: 242 ANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 301
AN AI QYV++VP+ +K +L ++L GS+++IF TK+ CD + R + + A+
Sbjct: 650 ANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTKRLCDHLARSVGRH-FGAVV 708
Query: 302 IHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXX 361
IHGDK+Q ERDWVL++F+SGKS ++ ATDVAARGLD+KD++ VINYDFP +EDYVH
Sbjct: 709 IHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIG 768
Query: 362 XXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPDL 402
FFT + ++A +LI +LE A Q+V P +
Sbjct: 769 RTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQV 809
>AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=645
Length = 645
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/406 (50%), Positives = 281/406 (69%), Gaps = 5/406 (1%)
Query: 2 TEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMA 61
E + Y + EITV G VP P+ +F G P +L EV AGF P+PIQ+Q WP+A
Sbjct: 136 NELSPEAYCRKHEITVSGGQVPPPLMSFEATGLPNELLREVYSAGFSAPSPIQAQSWPIA 195
Query: 62 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPIL-DPGDGPIVLVLAPTRELAVQIQQEC 120
++ RD++ IA+TGSGKTL YL+P +H+ Q I D GP +LVL+PTRELA QIQ E
Sbjct: 196 MQNRDIVAIAKTGSGKTLGYLIPGFMHL--QRIHNDSRMGPTILVLSPTRELATQIQVEA 253
Query: 121 TKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVL 180
KFG SS+I C+YGG PKGPQ++++++GV+IV+ATPGRL D+LE +L +V+YLVL
Sbjct: 254 LKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVL 313
Query: 181 DEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSED- 239
DEADRMLDMGF+PQIRKIV+++ RQTL ++ATWPKEV ++A L +P +V IG+ D
Sbjct: 314 DEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDE 373
Query: 240 LKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPA 299
L AN +I Q ++++ +K+ +L ++L GS+I+IF TK+ CDQ+ R L + A
Sbjct: 374 LVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGA 432
Query: 300 LSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHX 359
+IHGDKSQAERD VL++F+SG++P++ ATDVAARGLDVKD++ V+NYDFP +EDYVH
Sbjct: 433 AAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHR 492
Query: 360 XXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPDLAAM 405
FF +A+ A +LI ILE A Q+V P + M
Sbjct: 493 IGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREM 538
>AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=712
Length = 712
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/381 (50%), Positives = 266/381 (69%), Gaps = 10/381 (2%)
Query: 32 VGFPEYVL-----EEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 86
GF Y++ V AGF P+PIQ+Q WP+A++ RD++ IA+TGSGKTL YL+P
Sbjct: 229 AGFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGF 288
Query: 87 VHVNAQPIL-DPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVR 145
+H+ Q I D GP +LVL+PTRELA QIQ E KFG SS+I C+YGG PKGPQ++
Sbjct: 289 MHL--QRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLK 346
Query: 146 DLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPD 205
++++GV+IV+ATPGRL D+LE +L +V+YLVLDEADRMLDMGF+PQIRKIV+++
Sbjct: 347 EIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTK 406
Query: 206 RQTLYWSATWPKEVEQLARKFLYDPYKVIIGSED-LKANHAIKQYVDIVPEKQKYDKLVK 264
RQTL ++ATWPKEV ++A L +P +V IG+ D L AN +I Q ++++ +K+ +L +
Sbjct: 407 RQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQ 466
Query: 265 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSP 324
+L GS+I+IF TK+ CDQ+ R L + A +IHGDKSQAERD VL++F+SG++P
Sbjct: 467 ILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTP 525
Query: 325 IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFA 384
++ ATDVAARGLDVKD++ V+NYDFP +EDYVH FF +A+ A
Sbjct: 526 VLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHA 585
Query: 385 KELITILEEAGQRVSPDLAAM 405
+LI ILE A Q+V P + M
Sbjct: 586 SDLIKILEGANQKVPPQVREM 606
>AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7286356-7288842
FORWARD LENGTH=828
Length = 828
Score = 360 bits (923), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 181/429 (42%), Positives = 271/429 (63%), Gaps = 5/429 (1%)
Query: 1 MTEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPM 60
MT+ EV+ YR E+ V G+DVP+P+K ++ G +L+ +KK + +P PIQ+Q P+
Sbjct: 165 MTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPI 224
Query: 61 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEC 120
+ GRD IG+A+TGSGKTL ++LP + H+ QP ++ GDGPI LV+APTREL QI +
Sbjct: 225 IMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDI 284
Query: 121 TKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHH---TNLRRVTY 177
KF I+ +YGG Q+ +L++G EIV+ TPGR+ID+L + TNLRRVT+
Sbjct: 285 RKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTF 344
Query: 178 LVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGS 237
LV+DEADRM DMGF+PQI +I+ IRP+RQT+ +SAT+P++VE LARK L P ++ +G
Sbjct: 345 LVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGG 404
Query: 238 EDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW 297
+ N I Q V++ PE ++ +L++LL + + +IL+F+ +++ CD + R + +
Sbjct: 405 RSV-VNKDITQLVEVRPESDRFLRLLELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSY 463
Query: 298 PALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 357
P LS+HG K Q +R+ +S+FK+ ++ AT VAARGLDVK+++ V+N+D P EDYV
Sbjct: 464 PCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYV 523
Query: 358 HXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPDLAAMGRGAPPPPSGGF 417
H F + +A++A +L+ LE + Q V DL A+ G G
Sbjct: 524 HRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDLKALADGFMVKVKQGI 583
Query: 418 RD-RGKGYG 425
G GYG
Sbjct: 584 EQAHGTGYG 592
>AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7285342-7288842
FORWARD LENGTH=1166
Length = 1166
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 181/429 (42%), Positives = 271/429 (63%), Gaps = 5/429 (1%)
Query: 1 MTEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPM 60
MT+ EV+ YR E+ V G+DVP+P+K ++ G +L+ +KK + +P PIQ+Q P+
Sbjct: 503 MTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPI 562
Query: 61 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEC 120
+ GRD IG+A+TGSGKTL ++LP + H+ QP ++ GDGPI LV+APTREL QI +
Sbjct: 563 IMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDI 622
Query: 121 TKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHH---TNLRRVTY 177
KF I+ +YGG Q+ +L++G EIV+ TPGR+ID+L + TNLRRVT+
Sbjct: 623 RKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTF 682
Query: 178 LVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGS 237
LV+DEADRM DMGF+PQI +I+ IRP+RQT+ +SAT+P++VE LARK L P ++ +G
Sbjct: 683 LVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGG 742
Query: 238 EDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW 297
+ N I Q V++ PE ++ +L++LL + + +IL+F+ +++ CD + R + +
Sbjct: 743 RSV-VNKDITQLVEVRPESDRFLRLLELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSY 801
Query: 298 PALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 357
P LS+HG K Q +R+ +S+FK+ ++ AT VAARGLDVK+++ V+N+D P EDYV
Sbjct: 802 PCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYV 861
Query: 358 HXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPDLAAMGRGAPPPPSGGF 417
H F + +A++A +L+ LE + Q V DL A+ G G
Sbjct: 862 HRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDLKALADGFMVKVKQGI 921
Query: 418 RD-RGKGYG 425
G GYG
Sbjct: 922 EQAHGTGYG 930
>AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:19429083-19431617
REVERSE LENGTH=760
Length = 760
Score = 357 bits (917), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 189/404 (46%), Positives = 256/404 (63%), Gaps = 3/404 (0%)
Query: 1 MTEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPM 60
MTE E +YR R I V G DV +PVKTF D GF ++ +KK + +PT IQ Q P+
Sbjct: 202 MTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPI 261
Query: 61 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEC 120
L GRD+IGIA+TGSGKT A++LP IVH+ QP L +GPI ++ APTRELA QI E
Sbjct: 262 VLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEA 321
Query: 121 TKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVL 180
KF + ++ + +YGG+ K Q ++L+ G EIV+ATPGRLIDML+ + R +YLVL
Sbjct: 322 KKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVL 381
Query: 181 DEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDL 240
DEADRM D+GF+PQ+R IV QIRPDRQTL +SAT P +VE+LAR+ L DP +V +G +
Sbjct: 382 DEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGM 441
Query: 241 KANHAIKQYVDIVP-EKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPA 299
AN I Q V+++P + +K L++ L ++D +L+F K D+I QL ++ +
Sbjct: 442 -ANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKV 500
Query: 300 LSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHX 359
++HGDK QA R L +FKSG ++ ATDVAARGLD+K +K V+NYD ++ +VH
Sbjct: 501 AALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHR 560
Query: 360 X-XXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPDL 402
T ARFA EL+ L AGQ V P+L
Sbjct: 561 IGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPEL 604
>AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family
protein | chr1:11479921-11482707 FORWARD LENGTH=537
Length = 537
Score = 343 bits (879), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 188/406 (46%), Positives = 256/406 (63%), Gaps = 13/406 (3%)
Query: 12 RREITVEGRDVPKP----VKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDL 67
++++ V G+ V + +KTF + PE VL+ K F +P+PIQS WP L GRDL
Sbjct: 97 QQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDL 154
Query: 68 IGIAETGSGKTLAYLLPAIVHVNAQPILDPGD----GPIVLVLAPTRELAVQIQQECTKF 123
IGIA+TGSGKTLA+ +PAI+HV + G P LVL+PTRELAVQI +
Sbjct: 155 IGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREA 214
Query: 124 GASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEA 183
G +KS C+YGG KGPQ+ ++ GV+IVI TPGRL D++ES+ L V+++VLDEA
Sbjct: 215 GEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEA 274
Query: 184 DRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLY-DPYKVIIGSEDLKA 242
DRMLDMGF+ +R I+S RQ + +SATWP +V +LA++F+ +P KVIIGS DL A
Sbjct: 275 DRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAA 334
Query: 243 NHAIKQYVDIVPEKQKYDKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQLRMDGWPAL 300
NH + Q ++++ E+ + +L+ LLE +R+L+F K +++ R L+ GW A+
Sbjct: 335 NHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAV 394
Query: 301 SIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXX 360
SIHG+K+Q+ER LS FK G P++ ATDVAARGLD+ DV+ VINY FP + EDYVH
Sbjct: 395 SIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRI 454
Query: 361 XXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPDLAAMG 406
FFT N A EL+ +L EAGQ V DL G
Sbjct: 455 GRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVPADLLKFG 500
>AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2949152-2952205
REVERSE LENGTH=989
Length = 989
Score = 319 bits (818), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 171/429 (39%), Positives = 254/429 (59%), Gaps = 34/429 (7%)
Query: 1 MTEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPM 60
MT+ V+ YR E+ V G+DVP+P++ ++ G +L+ +KK + +P PIQ+Q P+
Sbjct: 370 MTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPI 429
Query: 61 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEC 120
+ GRD IG+A+TGSGKTL ++LP + H+ QP ++ GDGPI LV+APTREL QI +
Sbjct: 430 IMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDI 489
Query: 121 TKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHH---TNLRRVTY 177
KF + I +YGG Q+ +L++G EIV+ TPGR+ID+L + TNLRRVTY
Sbjct: 490 RKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTY 549
Query: 178 LVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGS 237
LV+DEADRM DMGF+PQI +IV IRPDRQT+ +SAT+P++VE LARK L P ++ +G
Sbjct: 550 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGG 609
Query: 238 EDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW 297
+ N I Q V+I PE +++ +L++LL + + ++L+F+ +++
Sbjct: 610 RSV-VNKDITQLVEIRPESERFSRLLELLGEWYEKGKVLVFVRSQEKS------------ 656
Query: 298 PALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 357
+S+FKS ++ AT VAARGLDVK+++ V+N+D P EDYV
Sbjct: 657 -----------------ISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYV 699
Query: 358 HXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPDLAAMGRGAPPPPSGGF 417
H F + +A++A +L+ LE + Q V D+ A+ G G
Sbjct: 700 HRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDVKAVAEGFMAKVKQGI 759
Query: 418 RD-RGKGYG 425
G GYG
Sbjct: 760 EQAHGTGYG 768
>AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:17705382-17708744
FORWARD LENGTH=633
Length = 633
Score = 306 bits (785), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 167/403 (41%), Positives = 244/403 (60%), Gaps = 24/403 (5%)
Query: 15 ITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETG 74
I G +VP PV TF ++ E + +++ +V+PTP+Q P+ L+GRDL+ A+TG
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 75 SGKTLAYLLPAIVHV-NAQPILDPGDG----PIVLVLAPTRELAVQIQQECTKFGASSRI 129
SGKT A+ P I + Q + P P+ ++L+PTRELA QI E KF + +
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV 266
Query: 130 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDM 189
K YGG P Q+R+L++GV+I++ATPGRL D+LE +++ + +L LDEADRMLDM
Sbjct: 267 KVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 326
Query: 190 GFDPQIRKIVSQI----RPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIG----SEDLK 241
GF+PQIRKIV Q+ R RQTL +SAT+P+E+++LA FL + + +G S DL
Sbjct: 327 GFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDL- 385
Query: 242 ANHAIKQYVDIVPEKQKYDKLVKLL----EDIMDGSR--ILIFMDTKKGCDQITRQLRMD 295
I Q V+ V + K L+ LL E+ + G + L+F++TK+G D + L ++
Sbjct: 386 ----IVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCIN 441
Query: 296 GWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLED 355
G+PA SIHGD++Q ER+ L FKSG++PI+ ATDVAARGLD+ V +V+N+D P ++D
Sbjct: 442 GFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDD 501
Query: 356 YVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRV 398
YVH FF N A+ L +++EA Q V
Sbjct: 502 YVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEV 544
>AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:21657099-21660352
FORWARD LENGTH=646
Length = 646
Score = 305 bits (780), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 171/406 (42%), Positives = 243/406 (59%), Gaps = 25/406 (6%)
Query: 15 ITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETG 74
I G +VP PV TF ++ E + +++ +V+PTP+Q P+ GRDL+ A+TG
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 75 SGKTLAYLLPAIVHV-NAQPILDP----GDGPIVLVLAPTRELAVQIQQECTKFGASSRI 129
SGKT A+ P I + Q I P G P+ ++L+PTRELA QI E KF + +
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGV 253
Query: 130 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDM 189
K YGG P Q+R+L++GV+I++ATPGRL D+LE +L+ V +L LDEADRMLDM
Sbjct: 254 KVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDM 313
Query: 190 GFDPQIRKIVSQIRPD----RQTLYWSATWPKEVEQLARKFLYDPYKVIIG----SEDLK 241
GF+PQIRKIV Q+ RQT+ +SAT+P+E+++LA FL + + +G S DL
Sbjct: 314 GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDL- 372
Query: 242 ANHAIKQYVDIVPEKQKYDKLVKLL----EDIMDGSR--ILIFMDTKKGCDQITRQLRMD 295
I Q V+ V + K L+ LL E+ G + L+F++TKKG D + L ++
Sbjct: 373 ----IVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCIN 428
Query: 296 GWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLED 355
G+PA +IHGD+SQ ER+ L FK+G++PI+ ATDVAARGLD+ V +V+N+D P ++D
Sbjct: 429 GFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDD 488
Query: 356 YVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPD 401
YVH FF N AK L +++EA Q V PD
Sbjct: 489 YVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEV-PD 533
>AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 301 bits (772), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 162/401 (40%), Positives = 236/401 (58%), Gaps = 22/401 (5%)
Query: 15 ITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETG 74
+ G DVP PV TF D+ + + +++ +V PTP+Q P+ L RDL+ A+TG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 75 SGKTLAYLLPAIVHVNAQPILDPGDG-----PIVLVLAPTRELAVQIQQECTKFGASSRI 129
SGKT A+ P I + ++ G P ++L+PTRELA QI E KF + +
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV 258
Query: 130 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDM 189
K YGG P Q+R+L++G +I++ATPGRL D+LE +++ + +L LDEADRMLDM
Sbjct: 259 KVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 318
Query: 190 GFDPQIRKIVSQI----RPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIG----SEDLK 241
GF+PQIRKIV Q+ R RQT+ +SAT+P ++++LA F+ + + +G S DL
Sbjct: 319 GFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDL- 377
Query: 242 ANHAIKQYVDIVPEKQKYDKLVKLL----EDIMDGSRILIFMDTKKGCDQITRQLRMDGW 297
I Q V+ V E K L+ LL E S L+F++TK+G D + L M+ +
Sbjct: 378 ----ITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEF 433
Query: 298 PALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 357
PA SIHGD++Q ER+ L FK+G++PI+ ATDVAARGLD+ V +V+N+D P ++DYV
Sbjct: 434 PATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYV 493
Query: 358 HXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRV 398
H FF NA+ A+ L +++EA Q V
Sbjct: 494 HRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEV 534
>AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 301 bits (772), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 162/401 (40%), Positives = 236/401 (58%), Gaps = 22/401 (5%)
Query: 15 ITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETG 74
+ G DVP PV TF D+ + + +++ +V PTP+Q P+ L RDL+ A+TG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 75 SGKTLAYLLPAIVHVNAQPILDPGDG-----PIVLVLAPTRELAVQIQQECTKFGASSRI 129
SGKT A+ P I + ++ G P ++L+PTRELA QI E KF + +
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV 258
Query: 130 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDM 189
K YGG P Q+R+L++G +I++ATPGRL D+LE +++ + +L LDEADRMLDM
Sbjct: 259 KVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 318
Query: 190 GFDPQIRKIVSQI----RPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIG----SEDLK 241
GF+PQIRKIV Q+ R RQT+ +SAT+P ++++LA F+ + + +G S DL
Sbjct: 319 GFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDL- 377
Query: 242 ANHAIKQYVDIVPEKQKYDKLVKLL----EDIMDGSRILIFMDTKKGCDQITRQLRMDGW 297
I Q V+ V E K L+ LL E S L+F++TK+G D + L M+ +
Sbjct: 378 ----ITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEF 433
Query: 298 PALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 357
PA SIHGD++Q ER+ L FK+G++PI+ ATDVAARGLD+ V +V+N+D P ++DYV
Sbjct: 434 PATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYV 493
Query: 358 HXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRV 398
H FF NA+ A+ L +++EA Q V
Sbjct: 494 HRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEV 534
>AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 301 bits (772), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 162/401 (40%), Positives = 236/401 (58%), Gaps = 22/401 (5%)
Query: 15 ITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETG 74
+ G DVP PV TF D+ + + +++ +V PTP+Q P+ L RDL+ A+TG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 75 SGKTLAYLLPAIVHVNAQPILDPGDG-----PIVLVLAPTRELAVQIQQECTKFGASSRI 129
SGKT A+ P I + ++ G P ++L+PTRELA QI E KF + +
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV 258
Query: 130 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDM 189
K YGG P Q+R+L++G +I++ATPGRL D+LE +++ + +L LDEADRMLDM
Sbjct: 259 KVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 318
Query: 190 GFDPQIRKIVSQI----RPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIG----SEDLK 241
GF+PQIRKIV Q+ R RQT+ +SAT+P ++++LA F+ + + +G S DL
Sbjct: 319 GFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDL- 377
Query: 242 ANHAIKQYVDIVPEKQKYDKLVKLL----EDIMDGSRILIFMDTKKGCDQITRQLRMDGW 297
I Q V+ V E K L+ LL E S L+F++TK+G D + L M+ +
Sbjct: 378 ----ITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEF 433
Query: 298 PALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 357
PA SIHGD++Q ER+ L FK+G++PI+ ATDVAARGLD+ V +V+N+D P ++DYV
Sbjct: 434 PATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYV 493
Query: 358 HXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRV 398
H FF NA+ A+ L +++EA Q V
Sbjct: 494 HRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEV 534
>AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:16069669-16071405 REVERSE LENGTH=542
Length = 542
Score = 286 bits (733), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 167/417 (40%), Positives = 238/417 (57%), Gaps = 15/417 (3%)
Query: 1 MTEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPM 60
M+ ++D R + ITV G D+P P+K F D+ FP +L +K G + PTPIQ QG P+
Sbjct: 71 MSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPV 130
Query: 61 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDP---GDGPIVLVLAPTRELAVQIQ 117
L GRD+IGIA TGSGKTL ++LP I+ + I+ P G+GPI LV+ P+RELA Q
Sbjct: 131 VLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTY 190
Query: 118 QECTKFGAS------SRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTN 171
+F AS R++S GGV Q+ ++KGV IV+ATPGRL D+L +
Sbjct: 191 DVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMS 250
Query: 172 LRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPY 231
L L LDEADR++D+GF+ IR + + RQTL +SAT P +++ A L P
Sbjct: 251 LDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPV 310
Query: 232 KVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGS-RILIFMDTKKGCDQITR 290
V +G AN + Q V+ V ++ K+V LLE + + +LIF + K D I
Sbjct: 311 TVNVGRAG-AANLDVIQEVEYVKQEA---KIVYLLECLQKTTPPVLIFCENKADVDDIHE 366
Query: 291 QLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFP 350
L + G A++IHG K Q +RD+ +S FK+GK ++ ATDVA++GLD D+++VINYD P
Sbjct: 367 YLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP 426
Query: 351 GSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFA-KELITILEEAGQRVSPDLAAMG 406
G +E+YVH F + +L +L+EA QR+ P LA +
Sbjct: 427 GEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELN 483
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD LENGTH=591
Length = 591
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 164/417 (39%), Positives = 240/417 (57%), Gaps = 15/417 (3%)
Query: 1 MTEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPM 60
M+ + D R + I V G D+P P+K F D+ FP VL+ +K+ G V+PTPIQ QG P+
Sbjct: 120 MSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPV 179
Query: 61 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDP---GDGPIVLVLAPTRELAVQIQ 117
L GRD+IGIA TGSGKTL ++LP I+ + ++ P G+GPI L++ P+RELA Q
Sbjct: 180 ILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTY 239
Query: 118 QECTKFGAS------SRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTN 171
+ +F A ++S GG+ Q+ +++GV IV+ATPGRL DML +
Sbjct: 240 EVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMS 299
Query: 172 LRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPY 231
L YL LDEADR++D+GF+ IR++ + RQTL +SAT P +++ AR L P
Sbjct: 300 LDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPV 359
Query: 232 KVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGS-RILIFMDTKKGCDQITR 290
V +G AN + Q V+ V ++ K+V LLE + S +LIF + K D I
Sbjct: 360 TVNVGRAG-AANLDVIQEVEYVKQEA---KIVYLLECLQKTSPPVLIFCENKADVDDIHE 415
Query: 291 QLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFP 350
L + G A++IHG K Q +R++ +S FK+GK ++ ATDVA++GLD D+++VINYD P
Sbjct: 416 YLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP 475
Query: 351 GSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFA-KELITILEEAGQRVSPDLAAMG 406
+E+YVH F + +L +L+EA QR+ P LA +
Sbjct: 476 AEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 532
>AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14265679-14267880
REVERSE LENGTH=733
Length = 733
Score = 282 bits (722), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 159/423 (37%), Positives = 247/423 (58%), Gaps = 22/423 (5%)
Query: 1 MTEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPM 60
MTE + +R I+ +G +P+P++++ + +L+ V++AG+ +P+PIQ P+
Sbjct: 287 MTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPL 346
Query: 61 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPIL---DPGDGPIVLVLAPTRELAVQIQ 117
L+ RD+IGIAETGSGKT A++LP + +++ P + + +GP +V+APTRELA QI+
Sbjct: 347 GLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIE 406
Query: 118 QECTKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTY 177
+E KF + T I GG Q + +G EIVIATPGRLID LE + L + Y
Sbjct: 407 EETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNY 466
Query: 178 LVLDEADRMLDMGFDPQIRKIV-----SQIRPD------------RQTLYWSATWPKEVE 220
+VLDEADRM+DMGF+PQ+ ++ S ++P+ R T +SAT P VE
Sbjct: 467 VVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVE 526
Query: 221 QLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMD 280
+LARK+L +P V IG+ K I Q+V ++ E +K+ +L KLL+++ + + I +F++
Sbjct: 527 RLARKYLRNPVVVTIGTAG-KTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAI-VFVN 584
Query: 281 TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKD 340
TKK CD I + L G+ ++HG KSQ +R+ L F++ + ++ ATDV RG+D+ D
Sbjct: 585 TKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPD 644
Query: 341 VKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSP 400
V +VINYD P +E Y H F T + +L +L ++ V P
Sbjct: 645 VAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPP 704
Query: 401 DLA 403
+LA
Sbjct: 705 ELA 707
>AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor
4A-III | chr3:6863790-6866242 FORWARD LENGTH=408
Length = 408
Score = 229 bits (583), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 121/346 (34%), Positives = 199/346 (57%), Gaps = 8/346 (2%)
Query: 14 EITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAET 73
++ E D +P+ +FND+G E VL V + GF +P+ IQ + L+GRD+I A++
Sbjct: 22 KLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQS 81
Query: 74 GSGKTLAYLLPAIVHVNAQPILDPGDGPI-VLVLAPTRELAVQIQQECTKFGASSRIKST 132
G+GKT +++ ++ ++D + L+L+PTRELA Q ++ G + I++
Sbjct: 82 GTGKT------SMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAH 135
Query: 133 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFD 192
GG G +R L+ GV +V TPGR+ DM++ R + L+LDE+D ML GF
Sbjct: 136 ACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFK 195
Query: 193 PQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDI 252
QI + + PD Q SAT P E+ ++ KF+ +P K+++ ++L + +V +
Sbjct: 196 DQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAV 255
Query: 253 VPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERD 312
E+ K+D L L D + ++ +IF +TK+ D ++ ++R + S+HGD Q ERD
Sbjct: 256 EKEEWKFDTLCDLY-DTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERD 314
Query: 313 WVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
+++EF+SG S ++ TDV ARG+DV+ V VINYD P + E Y+H
Sbjct: 315 AIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH 360
>AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:9843084-9845002
REVERSE LENGTH=614
Length = 614
Score = 228 bits (581), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 142/394 (36%), Positives = 204/394 (51%), Gaps = 29/394 (7%)
Query: 50 PTPIQS--QGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPIL---DPGDGPIVL 104
P P+++ + P+ L+ RD+IGI+ TGSGKT A++LP + +++ P + + +GP L
Sbjct: 223 PHPMRNWEETIPLGLEQRDVIGISATGSGKTAAFVLPMLAYISRLPPMREENQTEGPYAL 282
Query: 105 VLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM 164
V+ PTRELA QI++E KF K+ I G Q L +G EIVIATPGRL+D
Sbjct: 283 VMVPTRELAHQIEEETVKFSRYLGFKAVSITGWESIEKQALKLSQGCEIVIATPGRLLDC 342
Query: 165 LESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPD-----------------RQ 207
LE + L + YLVLDEADRM+DM F+PQ+ +++ + R
Sbjct: 343 LERRYVVLNQCNYLVLDEADRMIDMDFEPQVSEVLDVMPCSNLKPEKEDEELEEKKIYRT 402
Query: 208 TLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLE 267
T +SAT VE+LARKFL +P V IG + I Q V + E K+ +L KL++
Sbjct: 403 TYMFSATMLLSVERLARKFLRNPVVVTIG----ETTKFITQQVIMTKESDKFSRLKKLID 458
Query: 268 DIMDGSRILIFMDTKKGCDQITRQLRMDG-WPALSIHGDKSQAERDWVLSEFKSGKSPIM 326
D+ D ++F++T+ D I + L G ++H KSQ +RD+ L EFK + ++
Sbjct: 459 DLGDDKTAIVFVNTRNKVDYIVKNLEKVGRCRVTTLHAGKSQEQRDYSLEEFKKKRFNVL 518
Query: 327 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKE 386
TDV RGLD+ D+ VINYD P +++ Y H F T +
Sbjct: 519 VTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTLEDKDVFYG 578
Query: 387 LITILEEAGQRVSPDLAAMGRGAPPPPSGGFRDR 420
L L E V P+LA P G F DR
Sbjct: 579 LKQKLNECNSLVPPELARHEASKFKP--GTFPDR 610
>AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:19047960-19049967 FORWARD LENGTH=392
Length = 392
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/358 (36%), Positives = 208/358 (58%), Gaps = 14/358 (3%)
Query: 3 EAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMAL 62
E +DE L E T +G KP+K+F+D+G + VL V G+ +P+ IQ + L
Sbjct: 2 EGTLDEENLVFE-TTKG---IKPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPIL 57
Query: 63 KGRDLIGIAETGSGKT--LAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEC 120
KGRD+I A++G+GKT +A + IV+++++ + VLVL+P+RELA Q ++
Sbjct: 58 KGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTI 110
Query: 121 TKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVL 180
GA + I++ GG G ++ L++GV V TPGR+ DM++ + V LVL
Sbjct: 111 QAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVL 170
Query: 181 DEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDL 240
DE+D ML G QI + + D Q SAT P+E+ ++ KF+ DP ++++ ++L
Sbjct: 171 DESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDEL 230
Query: 241 KANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL 300
+ YVD+ E+ K+D L L + I IF +T++ D +T ++R +
Sbjct: 231 TLEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQAI-IFCNTRQKVDWLTEKMRSSNFIVS 289
Query: 301 SIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
S+HGDK Q ERD ++++F+S KS ++ A+DV ARG+DV+ V +VINYD P + E Y+H
Sbjct: 290 SMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIH 347
>AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=748
Length = 748
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 193/333 (57%), Gaps = 9/333 (2%)
Query: 32 VGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNA 91
+ P+ + E ++K G PIQ AL+GRD+I A+TG+GKTLA+ +P I +
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTE 166
Query: 92 QP-----ILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRD 146
+ G P LVLAPTRELA Q+++E + ++ + + C+YGGV Q
Sbjct: 167 EAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSA 224
Query: 147 LQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDR 206
L +GV++V+ TPGR+ID++E L V YLVLDEAD+ML +GF+ + I+ + R
Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 284
Query: 207 QTLYWSATWPKEVEQLARKFLYDPYKV-IIGSEDLKANHAIKQYVDIVPEKQKYDKLVKL 265
Q++ +SAT P V++LARK+L +P + ++G +D K IK Y K L L
Sbjct: 285 QSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 344
Query: 266 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPI 325
+ G + ++F TK+ D+++ L + ++HGD SQ +R+ L+ F+ GK +
Sbjct: 345 ITVYAKGGKTIVFTQTKRDADEVSLALS-NSIATEALHGDISQHQRERTLNAFRQGKFTV 403
Query: 326 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
+ ATDVA+RGLD+ +V VI+Y+ P E +VH
Sbjct: 404 LVATDVASRGLDIPNVDLVIHYELPNDPETFVH 436
>AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=747
Length = 747
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 193/333 (57%), Gaps = 9/333 (2%)
Query: 32 VGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNA 91
+ P+ + E ++K G PIQ AL+GRD+I A+TG+GKTLA+ +P I +
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTE 166
Query: 92 QP-----ILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRD 146
+ G P LVLAPTRELA Q+++E + ++ + + C+YGGV Q
Sbjct: 167 EAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSA 224
Query: 147 LQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDR 206
L +GV++V+ TPGR+ID++E L V YLVLDEAD+ML +GF+ + I+ + R
Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 284
Query: 207 QTLYWSATWPKEVEQLARKFLYDPYKV-IIGSEDLKANHAIKQYVDIVPEKQKYDKLVKL 265
Q++ +SAT P V++LARK+L +P + ++G +D K IK Y K L L
Sbjct: 285 QSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 344
Query: 266 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPI 325
+ G + ++F TK+ D+++ L + ++HGD SQ +R+ L+ F+ GK +
Sbjct: 345 ITVYAKGGKTIVFTQTKRDADEVSLALS-NSIATEALHGDISQHQRERTLNAFRQGKFTV 403
Query: 326 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
+ ATDVA+RGLD+ +V VI+Y+ P E +VH
Sbjct: 404 LVATDVASRGLDIPNVDLVIHYELPNDPETFVH 436
>AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
helicase 1 | chr3:7887382-7889806 FORWARD LENGTH=610
Length = 610
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 195/332 (58%), Gaps = 9/332 (2%)
Query: 31 DVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLP---AIV 87
D+G +++ +K G + PIQ A++GRD+IG A TG+GKTLA+ +P I+
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 88 HVNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDL 147
NA+ G P LVLAPTRELA Q+++E + S + + C+YGG P G Q+R+L
Sbjct: 180 KFNAKH--GRGKNPQCLVLAPTRELARQVEKEFRESAPS--LDTICLYGGTPIGQQMREL 235
Query: 148 QKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQ 207
G+++ + TPGR+ID+++ NL V ++VLDEAD+ML +GF + I+ ++ RQ
Sbjct: 236 NYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQ 295
Query: 208 TLYWSATWPKEVEQLARKFLYDPYKV-IIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLL 266
++ +SAT P + L +K+L +P + ++G D K I Y + + L+
Sbjct: 296 SMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLV 355
Query: 267 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 326
++ G + ++F TK+ D++ L + ++HGD SQA+R+ L+ F+ G I+
Sbjct: 356 KEHGKGGKCIVFTQTKRDADRLAFGL-AKSYKCEALHGDISQAQRERTLAGFRDGNFSIL 414
Query: 327 TATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
ATDVAARGLDV +V VI+Y+ P + E +VH
Sbjct: 415 VATDVAARGLDVPNVDLVIHYELPNNTETFVH 446
>AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 221 bits (563), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 136/405 (33%), Positives = 208/405 (51%), Gaps = 11/405 (2%)
Query: 7 DEYRLRREITV----EGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMAL 62
D LRR++ + +G VP PV TF G P +L ++ AG+ PTPIQ Q P AL
Sbjct: 86 DAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAAL 145
Query: 63 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGD---GPIVLVLAPTRELAVQIQQE 119
G+ L+ A+TGSGKT ++L+P I P D P+ +VLAPTREL VQ++ +
Sbjct: 146 TGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQ 205
Query: 120 CTKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLV 179
G K+ + GG P Q+ +Q+GVE++I TPGR++D+L H L + V
Sbjct: 206 AKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFV 265
Query: 180 LDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSED 239
LDE D ML GF Q+ +I Q Q L +SAT +EVE++ + V IG+ +
Sbjct: 266 LDEVDCMLQRGFRDQVMQIF-QALSQPQVLLFSATISREVEKVGGSLAKEIILVSIGNPN 324
Query: 240 LKANHAIKQYVDIVPEKQKYDKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLR-MDGW 297
K N A+ Q V KQK KL +L ++++ ++ G D + + + G
Sbjct: 325 -KPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANAITVVTGV 383
Query: 298 PALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 357
ALSIHG+K ER V+ F G+ P++ +T V RG+D+ V+ VI +D P ++++Y+
Sbjct: 384 KALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYI 443
Query: 358 HXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPDL 402
H F + +L+ L+ +G + +L
Sbjct: 444 HVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKEL 488
>AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 221 bits (563), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 136/405 (33%), Positives = 208/405 (51%), Gaps = 11/405 (2%)
Query: 7 DEYRLRREITV----EGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMAL 62
D LRR++ + +G VP PV TF G P +L ++ AG+ PTPIQ Q P AL
Sbjct: 86 DAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAAL 145
Query: 63 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGD---GPIVLVLAPTRELAVQIQQE 119
G+ L+ A+TGSGKT ++L+P I P D P+ +VLAPTREL VQ++ +
Sbjct: 146 TGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQ 205
Query: 120 CTKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLV 179
G K+ + GG P Q+ +Q+GVE++I TPGR++D+L H L + V
Sbjct: 206 AKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFV 265
Query: 180 LDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSED 239
LDE D ML GF Q+ +I Q Q L +SAT +EVE++ + V IG+ +
Sbjct: 266 LDEVDCMLQRGFRDQVMQIF-QALSQPQVLLFSATISREVEKVGGSLAKEIILVSIGNPN 324
Query: 240 LKANHAIKQYVDIVPEKQKYDKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLR-MDGW 297
K N A+ Q V KQK KL +L ++++ ++ G D + + + G
Sbjct: 325 -KPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANAITVVTGV 383
Query: 298 PALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 357
ALSIHG+K ER V+ F G+ P++ +T V RG+D+ V+ VI +D P ++++Y+
Sbjct: 384 KALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYI 443
Query: 358 HXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPDL 402
H F + +L+ L+ +G + +L
Sbjct: 444 HVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKEL 488
>AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA
helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616
Length = 616
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 196/333 (58%), Gaps = 9/333 (2%)
Query: 30 NDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLP---AI 86
+++G +++ + G + PIQ A++GRD+IG A TG+GKTLA+ +P I
Sbjct: 107 SELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI 166
Query: 87 VHVNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRD 146
+ NA+ G P+ LVLAPTRELA Q+++E + S + + C+YGG P G Q+R
Sbjct: 167 IKYNAKH--GRGRNPLCLVLAPTRELARQVEKEFRESAPS--LDTICLYGGTPIGQQMRQ 222
Query: 147 LQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDR 206
L GV++ + TPGR+ID+++ NL V ++VLDEAD+ML +GF + I+ ++ R
Sbjct: 223 LDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKR 282
Query: 207 QTLYWSATWPKEVEQLARKFLYDPYKV-IIGSEDLKANHAIKQYVDIVPEKQKYDKLVKL 265
Q++ +SAT P + L +K+L +P V ++G D K I Y I + + L
Sbjct: 283 QSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPL 342
Query: 266 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPI 325
+ + G + ++F TK+ D+++ L + ++HGD SQ++R+ L+ F+ G I
Sbjct: 343 VTEHAKGGKCIVFTQTKRDADRLSYALARS-FKCEALHGDISQSQRERTLAGFRDGHFNI 401
Query: 326 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
+ ATDVAARGLDV +V +I+Y+ P + E +VH
Sbjct: 402 LVATDVAARGLDVPNVDLIIHYELPNNTETFVH 434
>AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288618 REVERSE LENGTH=655
Length = 655
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/304 (38%), Positives = 181/304 (59%), Gaps = 9/304 (2%)
Query: 61 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP-----ILDPGDGPIVLVLAPTRELAVQ 115
AL+GRD+I A+TG+GKTLA+ +P I + + G P LVLAPTRELA Q
Sbjct: 43 ALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQ 102
Query: 116 IQQECTKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRV 175
+++E + ++ + + C+YGGV Q L +GV++V+ TPGR+ID++E L V
Sbjct: 103 VEKEIKE--SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEV 160
Query: 176 TYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKV-I 234
YLVLDEAD+ML +GF+ + I+ + RQ++ +SAT P V++LARK+L +P + +
Sbjct: 161 EYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 220
Query: 235 IGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM 294
+G +D K IK Y K L L+ G + ++F TK+ D+++ L
Sbjct: 221 VGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALS- 279
Query: 295 DGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLE 354
+ ++HGD SQ +R+ L+ F+ GK ++ ATDVA+RGLD+ +V VI+Y+ P E
Sbjct: 280 NSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPE 339
Query: 355 DYVH 358
+VH
Sbjct: 340 TFVH 343
>AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:24546601-24549148 REVERSE LENGTH=456
Length = 456
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/342 (36%), Positives = 199/342 (58%), Gaps = 12/342 (3%)
Query: 26 VKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPA 85
VKTF ++G E +++ ++ G+ P+ IQ++ P AL+G+D+IG+A+TGSGKT A+ +P
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIP- 66
Query: 86 IVHVNAQPILD--------PGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGG 137
I+ + + D P VL+PTRELA+QI ++ GA ++ + GG
Sbjct: 67 ILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGG 126
Query: 138 VPKGPQVRDLQKGVEIVIATPGRLID-MLESHHTNLRRVTYLVLDEADRMLDMGFDPQIR 196
+ + Q L K +++ATPGRL D M ++ +L+ + YLVLDEADR+L+ F+ +
Sbjct: 127 IDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLN 186
Query: 197 KIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEK 256
+I+ +I +R+T +SAT K+V +L R L +P K+ S+ +KQ V K
Sbjct: 187 QILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASK-YSTVDTLKQQYRFVAAK 245
Query: 257 QKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLS 316
K LV +L + M S +IF T G + LR G+ A+ I G +Q++R L+
Sbjct: 246 YKDCYLVYILSE-MPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALN 304
Query: 317 EFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
+FK+G+ I+ TDVA+RGLD+ V VINYD P + +DY+H
Sbjct: 305 KFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIH 346
>AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 |
chr1:5568482-5570487 REVERSE LENGTH=491
Length = 491
Score = 204 bits (520), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 199/383 (51%), Gaps = 24/383 (6%)
Query: 28 TFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 87
F +G E+ +E K+ G +PTP+Q+ P L GRD++G+A+TGSGKT A+ LP I+
Sbjct: 59 NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-IL 117
Query: 88 HVNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDL 147
H A+ DP G LV+ PTRELA Q+ ++ G+ ++ + I GG+ Q L
Sbjct: 118 HRLAE---DPY-GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSL 173
Query: 148 QKGVEIVIATPGRLIDMLESHHTN---LRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRP 204
IVI TPGR+ +LE++ R +LVLDEADR+LD+GF ++R I +
Sbjct: 174 VSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPK 233
Query: 205 DRQTLYWSATWPKEVEQL-----ARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKY 259
RQTL +SAT ++ L + + Y+ Y E LK + Q + K
Sbjct: 234 SRQTLLFSATMTSNLQALLEHSSNKAYFYEAY------EGLKTVDTLTQQFIFEDKDAKE 287
Query: 260 DKLVKLLEDIMD-GSR-ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSE 317
LV +L + D G R +IF+ T + C +++ L +++H SQ+ R LS+
Sbjct: 288 LYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSK 347
Query: 318 FKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFT 377
FKSGK PI+ ATDVA+RGLD+ V VINYD P DYVH T
Sbjct: 348 FKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIIT 407
Query: 378 AANARFAKELITILEEAGQRVSP 400
+ + + I EE G+++ P
Sbjct: 408 ETDVKLIHK---IEEEVGKKMEP 427
>AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592586-4594128 REVERSE
LENGTH=415
Length = 415
Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 178/332 (53%), Gaps = 6/332 (1%)
Query: 27 KTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 86
++F+ +G E +L + GF +P+ IQ +G KG D+I A++G+GKT + +
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL 98
Query: 87 VHVNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRD 146
++ I LVLAPTRELA QI++ G +K GG R
Sbjct: 99 QQLDFSLIQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 153
Query: 147 LQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDR 206
LQ GV +V+ TPGR+ DML+ + VLDEAD ML GF QI I + P
Sbjct: 154 LQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKI 213
Query: 207 QTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLL 266
Q +SAT P E ++ RKF+ P ++++ ++L + YV++ E+ K + L L
Sbjct: 214 QVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY 273
Query: 267 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 326
E + ++ +IF++T++ D +T ++R + HGD Q RD ++ EF+SG S ++
Sbjct: 274 ETLAI-TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332
Query: 327 TATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
TD+ ARG+DV+ V VIN+D P E+Y+H
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLH 364
>AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594128 REVERSE
LENGTH=412
Length = 412
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 178/332 (53%), Gaps = 6/332 (1%)
Query: 27 KTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 86
++F+ +G E +L + GF +P+ IQ +G KG D+I A++G+GKT + +
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL 98
Query: 87 VHVNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRD 146
++ I LVLAPTRELA QI++ G +K GG R
Sbjct: 99 QQLDFSLIQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 153
Query: 147 LQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDR 206
LQ GV +V+ TPGR+ DML+ + VLDEAD ML GF QI I + P
Sbjct: 154 LQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKI 213
Query: 207 QTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLL 266
Q +SAT P E ++ RKF+ P ++++ ++L + YV++ E+ K + L L
Sbjct: 214 QVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY 273
Query: 267 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 326
E + ++ +IF++T++ D +T ++R + HGD Q RD ++ EF+SG S ++
Sbjct: 274 ETLAI-TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332
Query: 327 TATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
TD+ ARG+DV+ V VIN+D P E+Y+H
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLH 364
>AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594094 REVERSE
LENGTH=402
Length = 402
Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 178/332 (53%), Gaps = 6/332 (1%)
Query: 27 KTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 86
++F+ +G E +L + GF +P+ IQ +G KG D+I A++G+GKT + +
Sbjct: 29 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL 88
Query: 87 VHVNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRD 146
++ I LVLAPTRELA QI++ G +K GG R
Sbjct: 89 QQLDFSLIQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 143
Query: 147 LQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDR 206
LQ GV +V+ TPGR+ DML+ + VLDEAD ML GF QI I + P
Sbjct: 144 LQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKI 203
Query: 207 QTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLL 266
Q +SAT P E ++ RKF+ P ++++ ++L + YV++ E+ K + L L
Sbjct: 204 QVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY 263
Query: 267 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 326
E + ++ +IF++T++ D +T ++R + HGD Q RD ++ EF+SG S ++
Sbjct: 264 ETLAI-TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 322
Query: 327 TATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
TD+ ARG+DV+ V VIN+D P E+Y+H
Sbjct: 323 ITTDLLARGIDVQQVSLVINFDLPTQPENYLH 354
>AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) |
chr5:24980542-24983879 REVERSE LENGTH=671
Length = 671
Score = 195 bits (495), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 196/348 (56%), Gaps = 18/348 (5%)
Query: 21 DVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLA 80
D P V F + P + E++K G PIQ+ + M L G DL+G A TG GKTLA
Sbjct: 93 DNPNAVSKFR-ISAP--LREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLA 149
Query: 81 YLLPAIVHVNAQPI-----LDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIY 135
++LP + + P + G P VLVL PTRELA Q+ + +G S + S C+Y
Sbjct: 150 FVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLY 209
Query: 136 GGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQI 195
GG Q L++GV+IV+ TPGR+ D +E + + + + VLDEAD ML MGF +
Sbjct: 210 GGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDV 269
Query: 196 RKIVSQIRPDR--QTLYWSATWPKEVEQLARKFLYDPYKVI--IGSEDLKANHAIKQYVD 251
I+ ++ QTL +SAT P V+ ++ +FL K I +G++ +KA+++++ ++
Sbjct: 270 ELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVR-HIA 328
Query: 252 IVPEKQKYDKLV-KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAE 310
I K +L+ ++ G + +IF +TK +++ L DG AL HG+ Q++
Sbjct: 329 IPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLL--DGSRAL--HGEIPQSQ 384
Query: 311 RDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
R+ L+ F++GK + AT+VAARGLD+ DV+ +I + P +E Y+H
Sbjct: 385 REVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIH 432
>AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2980483-2983268
REVERSE LENGTH=541
Length = 541
Score = 194 bits (494), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 127/399 (31%), Positives = 207/399 (51%), Gaps = 22/399 (5%)
Query: 10 RLRREITVEGRDVPKPVKTFNDV----GFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGR 65
R + I V G ++P P+K+F ++ G Y+L + + GF EPTPIQ Q P+ L GR
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 66 DLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGA 125
+ A TGSGKT A++ P ++ + +P DG ++L+P RELA Q +E K
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLK-RP---STDGIRAVILSPARELAAQTAREGKKL-- 233
Query: 126 SSRIKSTCIYGGVPKGPQVR--DLQK-GVEIVIATPGRLIDMLESHHTNLRRVTYLVLDE 182
IK + + + P V+ D K +++I+TP RL +++ +L +V YLVLDE
Sbjct: 234 ---IKGSNFHIRLMTKPLVKTADFSKLWCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDE 290
Query: 183 ADRMLDMGFDPQIRKIVSQI-RPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLK 241
+D++ + QI +V P +SAT P VE+LAR ++D +VIIG ++
Sbjct: 291 SDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNT- 349
Query: 242 ANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSR--ILIFMDTKKGCDQITRQLRMDGWPA 299
A+ +KQ +V + KL+ L + + +LIF+ +K+ ++ +L+ + A
Sbjct: 350 ASETVKQ--KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRA 407
Query: 300 LSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHX 359
IH D ER+ + +F++G+ ++ ATDV ARG+D K + VINYDFP S Y+H
Sbjct: 408 GVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHR 467
Query: 360 XXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRV 398
F+T + F + + + +G V
Sbjct: 468 IGRSGRAGRSGEAITFYTEQDVPFLRNIANTMMSSGCEV 506
>AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides, in
phosphorus-containing anhydrides;ATP-dependent
helicases;nucleic acid binding;ATP binding;RNA
binding;helicases | chr1:28947887-28951526 REVERSE
LENGTH=845
Length = 845
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 184/332 (55%), Gaps = 6/332 (1%)
Query: 29 FNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 88
F + V +KK G+ PTPIQ + P+ L G D++ +A TGSGKT A+L+P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 89 VNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDLQ 148
+ P G L+L+PTR+LA Q + + G + ++ + + GG Q +L
Sbjct: 90 LKQHV---PQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELT 146
Query: 149 KGVEIVIATPGRLIDML-ESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQ 207
KG +++IATPGRL+ +L E LR V Y+V DEAD + MGF Q+ +I++Q+ +RQ
Sbjct: 147 KGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQ 206
Query: 208 TLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLL- 266
TL +SAT P + + A+ L +P V + E+ + ++ + PE +KY L+ L+
Sbjct: 207 TLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPE-EKYSALLYLVR 265
Query: 267 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 326
E I + LIF+ TK + + +++ +GD Q R +S F++ K+ ++
Sbjct: 266 EHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLL 325
Query: 327 TATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
TD+AARG+D+ + VIN+DFP + +VH
Sbjct: 326 IVTDIAARGIDIPLLDNVINWDFPPRPKIFVH 357
>AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=412
Length = 412
Score = 191 bits (486), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 176/332 (53%), Gaps = 6/332 (1%)
Query: 27 KTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 86
++F+ +G E +L + GF +P+ IQ +G KG D+I A++G+GKT + +
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL 98
Query: 87 VHVNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRD 146
++ + LVLAPTRELA QI++ G +K GG R
Sbjct: 99 QQLDYALLQCQA-----LVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRI 153
Query: 147 LQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDR 206
LQ GV +V+ TPGR+ DML + VLDEAD ML GF QI I + P
Sbjct: 154 LQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKI 213
Query: 207 QTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLL 266
Q +SAT P E ++ RKF+ P ++++ ++L + YV++ E K + L L
Sbjct: 214 QVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLY 273
Query: 267 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 326
E + ++ +IF++T++ D +T ++R + HGD Q RD ++ EF+SG S ++
Sbjct: 274 ETLAI-TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332
Query: 327 TATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
TD+ ARG+DV+ V VIN+D P E+Y+H
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLH 364
>AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiation
factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=407
Length = 407
Score = 191 bits (485), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 189/359 (52%), Gaps = 10/359 (2%)
Query: 2 TEAEVDEYRLRREITVEGRDVPKPVKTFNDV--GFPEYVLEEVKKAGFVEPTPIQSQGWP 59
T+ + ++ + +EG+D + +++DV F L+E GF +P+ IQ +G
Sbjct: 9 TQFDARQFDQKLNEVLEGQD--EFFTSYDDVHESFDAMGLQENLLRGFEKPSAIQQRGIV 66
Query: 60 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQE 119
KG D+I A++G+GKT + + ++ I LVLAPTRELA QI++
Sbjct: 67 PFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQA-----LVLAPTRELAQQIEKV 121
Query: 120 CTKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLV 179
G +K GG R LQ GV +V+ TPGR+ DML+ + V
Sbjct: 122 MRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFV 181
Query: 180 LDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSED 239
LDEAD ML GF QI I + P Q +SAT P E ++ RKF+ P ++++ ++
Sbjct: 182 LDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDE 241
Query: 240 LKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPA 299
L + YV++ E+ K + L L E + ++ +IF++T++ D +T ++R
Sbjct: 242 LTLEGIKQFYVNVEKEEWKLETLCDLYETLA-ITQSVIFVNTRRKVDWLTDKMRSRDHTV 300
Query: 300 LSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
+ HGD Q RD ++ EF+SG S ++ TD+ ARG+DV+ V VIN+D P E+Y+H
Sbjct: 301 SATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLH 359
>AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 173/332 (52%), Gaps = 12/332 (3%)
Query: 29 FNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 88
F D +L + + GF P+PIQ + P+AL GRD++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 89 VNAQPILDPGDGPIV--LVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRD 146
++ D ++ +++ PTRELA+Q Q C + G +I+ GG +
Sbjct: 193 IDQ-------DNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMR 245
Query: 147 LQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDR 206
L + V +++ TPGR++D+ + L+ + LV+DEAD++L F P + ++S + R
Sbjct: 246 LYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESR 305
Query: 207 QTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLL 266
Q L +SAT+P V+ +FL +PY +I D I Q+ V E+QK L L
Sbjct: 306 QILMFSATFPVTVKDFKDRFLTNPY--VINLMDELTLKGITQFYAFVEERQKIHCLNTLF 363
Query: 267 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 326
+ I IF ++ + + +++ G+ IH Q R+ V +F++G +
Sbjct: 364 SKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNL 422
Query: 327 TATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
TD+ RG+D++ V VIN+DFP + E Y+H
Sbjct: 423 VCTDLFTRGIDIQAVNVVINFDFPKNAETYLH 454
>AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 173/332 (52%), Gaps = 12/332 (3%)
Query: 29 FNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 88
F D +L + + GF P+PIQ + P+AL GRD++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 89 VNAQPILDPGDGPIV--LVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRD 146
++ D ++ +++ PTRELA+Q Q C + G +I+ GG +
Sbjct: 193 IDQ-------DNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMR 245
Query: 147 LQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDR 206
L + V +++ TPGR++D+ + L+ + LV+DEAD++L F P + ++S + R
Sbjct: 246 LYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESR 305
Query: 207 QTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLL 266
Q L +SAT+P V+ +FL +PY +I D I Q+ V E+QK L L
Sbjct: 306 QILMFSATFPVTVKDFKDRFLTNPY--VINLMDELTLKGITQFYAFVEERQKIHCLNTLF 363
Query: 267 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 326
+ I IF ++ + + +++ G+ IH Q R+ V +F++G +
Sbjct: 364 SKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNL 422
Query: 327 TATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
TD+ RG+D++ V VIN+DFP + E Y+H
Sbjct: 423 VCTDLFTRGIDIQAVNVVINFDFPKNAETYLH 454
>AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359628-360734
FORWARD LENGTH=368
Length = 368
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 179/352 (50%), Gaps = 7/352 (1%)
Query: 56 QGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGD---GPIVLVLAPTREL 112
Q P AL G+ L+ A+TGSGKT ++L+P I P D P+ +VLAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 113 AVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNL 172
VQ++ + G K+ + GG P Q+ +Q+GVE++I TPGR++D+L H L
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIEL 121
Query: 173 RRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYK 232
+ VLDE D ML GF Q+ +I Q Q L +SAT +EVE++ +
Sbjct: 122 DNIMTFVLDEVDCMLQRGFRDQVMQIF-QALSQPQVLLFSATISREVEKVGGSLAKEIIL 180
Query: 233 VIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGS-RILIFMDTKKGCDQITRQ 291
V IG+ + K N A+ Q V KQK KL +L ++++ ++ G D +
Sbjct: 181 VSIGNPN-KPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANA 239
Query: 292 LR-MDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFP 350
+ + G ALSIHG+K ER V+ F G+ P++ +T V RG+D+ V+ VI +D P
Sbjct: 240 ITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMP 299
Query: 351 GSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKELITILEEAGQRVSPDL 402
++++Y+H F + +L+ L+ +G + +L
Sbjct: 300 STIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKEL 351
>AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=407
Length = 407
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 175/332 (52%), Gaps = 11/332 (3%)
Query: 27 KTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 86
++F+ +G E +L GF +P+ IQ +G KG D+I A++G+GKT + +
Sbjct: 39 ESFDAMGLQENLLR-----GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL 93
Query: 87 VHVNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRD 146
++ + LVLAPTRELA QI++ G +K GG R
Sbjct: 94 QQLDYALLQCQA-----LVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRI 148
Query: 147 LQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDR 206
LQ GV +V+ TPGR+ DML + VLDEAD ML GF QI I + P
Sbjct: 149 LQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKI 208
Query: 207 QTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLL 266
Q +SAT P E ++ RKF+ P ++++ ++L + YV++ E K + L L
Sbjct: 209 QVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLY 268
Query: 267 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 326
E + ++ +IF++T++ D +T ++R + HGD Q RD ++ EF+SG S ++
Sbjct: 269 ETLA-ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 327
Query: 327 TATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
TD+ ARG+DV+ V VIN+D P E+Y+H
Sbjct: 328 ITTDLLARGIDVQQVSLVINFDLPTQPENYLH 359
>AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:26358328-26361244 FORWARD LENGTH=633
Length = 633
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 186/340 (54%), Gaps = 15/340 (4%)
Query: 27 KTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 86
KTF + + + +K+ GF T IQ++ P + G D++G A TGSGKTLA+L+PA
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA- 212
Query: 87 VHVNAQPILDPGDGPIVLVLAPTRELAVQ---IQQECTKFGASSRIKSTCIYGGVPKGPQ 143
V + + P +G VLV+ PTRELA+Q + +E K+ + + K + GG + +
Sbjct: 213 VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGK---VIGGEKRKTE 269
Query: 144 VRDLQKGVEIVIATPGRLIDMLESHHTN---LRRVTYLVLDEADRMLDMGFDPQIRKIVS 200
L KGV +++ATPGRL+D LE +TN + + +LV+DEADR+L+ F+ ++KI++
Sbjct: 270 AEILAKGVNLLVATPGRLLDHLE--NTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILN 327
Query: 201 QIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVII--GSEDLKANHAIKQYVDIVPEKQK 258
+ RQT +SAT +VE LAR L P + + G +++ N ++Q +VP +
Sbjct: 328 LLPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEV-TNEGLEQGYCVVPSAMR 386
Query: 259 YDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF 318
L+ L+ +I++F T K R + L I G Q +R +F
Sbjct: 387 LLFLLTFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQF 446
Query: 319 KSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
++ I+ T+VAARGLD V +++ YD P + DY+H
Sbjct: 447 IKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIH 486
>AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:27378040-27379593 REVERSE LENGTH=414
Length = 414
Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 111/350 (31%), Positives = 177/350 (50%), Gaps = 6/350 (1%)
Query: 38 VLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDP 97
+L + GF +P+ IQ +G KG D+I A++G+GKT + + ++ +
Sbjct: 52 LLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQ 111
Query: 98 GDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIAT 157
LVLAPTRELA QI++ G +K+ GG R LQ GV +V+ T
Sbjct: 112 A-----LVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGT 166
Query: 158 PGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPK 217
PGR+ D+L + VLDEAD ML GF QI I + Q +SAT P
Sbjct: 167 PGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPP 226
Query: 218 EVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILI 277
E ++ RKF+ P ++++ ++L + YV++ E+ K + L L E + ++ +I
Sbjct: 227 EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI-TQSVI 285
Query: 278 FMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLD 337
F++T++ D +T ++R + HGD Q RD ++ EF+SG S ++ TD+ ARG+D
Sbjct: 286 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 345
Query: 338 VKDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARFAKEL 387
V+ V VIN+D P E+Y+H F T+ + R ++
Sbjct: 346 VQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADI 395
>AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 170/331 (51%), Gaps = 10/331 (3%)
Query: 29 FNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 88
F D +L+ + + GF +P+PIQ + P+AL G D++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 89 VNAQPILDPGDGPI-VLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDL 147
+ DP + I ++L PTRELA+Q Q C + I+ GG + L
Sbjct: 186 I------DPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRL 239
Query: 148 QKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQ 207
+ V +++ TPGR++D+ + L+ LV+DEAD++L F P + +++ + +RQ
Sbjct: 240 HQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQ 299
Query: 208 TLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLE 267
L +SAT+P V+ + L PY +I D + QY V E+QK L L
Sbjct: 300 FLMFSATFPVTVKAFKDRHLRKPY--VINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFS 357
Query: 268 DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMT 327
+ I IF ++ + + +++ G+ IH Q R+ V EF++G +
Sbjct: 358 KLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLV 416
Query: 328 ATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
TD+ RG+D++ V VIN+DFP + E Y+H
Sbjct: 417 CTDLFTRGIDIQAVNVVINFDFPRTSESYLH 447
>AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 170/331 (51%), Gaps = 10/331 (3%)
Query: 29 FNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 88
F D +L+ + + GF +P+PIQ + P+AL G D++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 89 VNAQPILDPGDGPI-VLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDL 147
+ DP + I ++L PTRELA+Q Q C + I+ GG + L
Sbjct: 186 I------DPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRL 239
Query: 148 QKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQ 207
+ V +++ TPGR++D+ + L+ LV+DEAD++L F P + +++ + +RQ
Sbjct: 240 HQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQ 299
Query: 208 TLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLE 267
L +SAT+P V+ + L PY +I D + QY V E+QK L L
Sbjct: 300 FLMFSATFPVTVKAFKDRHLRKPY--VINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFS 357
Query: 268 DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMT 327
+ I IF ++ + + +++ G+ IH Q R+ V EF++G +
Sbjct: 358 KLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLV 416
Query: 328 ATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
TD+ RG+D++ V VIN+DFP + E Y+H
Sbjct: 417 CTDLFTRGIDIQAVNVVINFDFPRTSESYLH 447
>AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:18859836-18862318 FORWARD LENGTH=528
Length = 528
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/331 (31%), Positives = 171/331 (51%), Gaps = 10/331 (3%)
Query: 29 FNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 88
F D +L + + GF +P+PIQ + P+AL G D++ A+ G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 89 VNAQPILDPGDGPI-VLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDL 147
+ DP + I ++L PTRELA+Q Q C + +I+ GG + L
Sbjct: 216 I------DPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRL 269
Query: 148 QKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQ 207
+ V +++ TPGR++D+ + L+ LV+DEAD++L + F P I +++ + RQ
Sbjct: 270 YQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQ 329
Query: 208 TLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLE 267
L +SAT+P V+ ++L PY II D + QY V E+QK L L
Sbjct: 330 ILMFSATFPVTVKSFKDRYLKKPY--IINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFS 387
Query: 268 DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMT 327
+ I IF ++ + + +++ G+ IH Q R+ V +F++G +
Sbjct: 388 KLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLV 446
Query: 328 ATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
TD+ RG+D++ V VIN+DFP + E Y+H
Sbjct: 447 CTDLFTRGIDIQAVNVVINFDFPRTSESYLH 477
>AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:6399724-6403007
REVERSE LENGTH=568
Length = 568
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/348 (33%), Positives = 183/348 (52%), Gaps = 5/348 (1%)
Query: 13 REITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAE 72
+ I + G+ + V TF+ + E +K+ GF T IQ+ L+G+D++G A
Sbjct: 76 KNIVIVGKGIMTNV-TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAAR 134
Query: 73 TGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKST 132
TGSGKTLA+L+PA V + + P +G V+V+ PTRELA+Q + + +
Sbjct: 135 TGSGKTLAFLIPA-VELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVS 193
Query: 133 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNL-RRVTYLVLDEADRMLDMGF 191
+ GG + + + + G +VIATPGRL+D L++ + + + LV+DEADR+L+ F
Sbjct: 194 MVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENF 253
Query: 192 DPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLK-ANHAIKQYV 250
+ + KI+ + RQT +SAT +V+ LAR L P V + K N ++Q
Sbjct: 254 EEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGY 313
Query: 251 DIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAE 310
+VP KQ+ L+ L+ ++ +I++F T K T +++ IHG Q
Sbjct: 314 CVVPSKQRLILLISFLKKNLN-KKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNR 372
Query: 311 RDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
R +F K I+ TDVAARGLD+ V ++I YD P +Y+H
Sbjct: 373 RTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIH 420
>AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:9362176-9366449 REVERSE LENGTH=789
Length = 789
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 177/333 (53%), Gaps = 4/333 (1%)
Query: 28 TFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 87
TF ++ +L + G+ +PTPIQ+ P+AL GRDL A TGSGKT A+ LP +
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
Query: 88 HVNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDL 147
+ +P VL+L PTRELAVQI + IK I GG+ Q L
Sbjct: 228 RLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVL 285
Query: 148 QKGVEIVIATPGRLIDML-ESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDR 206
+ +IV+ATPGR+ID L S +L + L+LDEADR+L GF +I ++V R
Sbjct: 286 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRR 345
Query: 207 QTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKL- 265
QT+ +SAT +EV++L + L P ++ + ++ V I ++ + V L
Sbjct: 346 QTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLS 405
Query: 266 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPI 325
L S+++IF TK+ ++ + G A +HG+ +QA+R L F+ +
Sbjct: 406 LCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDF 465
Query: 326 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
+ ATDVAARGLD+ V+ VINY P ++ YVH
Sbjct: 466 LIATDVAARGLDIIGVQTVINYACPREIDSYVH 498
>AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:22298668-22301719 REVERSE LENGTH=739
Length = 739
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/368 (33%), Positives = 196/368 (53%), Gaps = 10/368 (2%)
Query: 26 VKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPA 85
V+ F + + +K A +V+ T +QS P AL GRD++G A TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 86 IVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVR 145
+ ++ + P DG ++++PTRELA Q K G + + + GG +
Sbjct: 130 LEKLHRER-WSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEK 188
Query: 146 DLQKGVEIVIATPGRLID-MLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRP 204
+ + I++ PGRL+ M E+ + ++ L+LDEADR+LD F Q+ I+SQ+
Sbjct: 189 ERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPK 248
Query: 205 DRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKAN-HAIKQYVDIVPEKQKYDKLV 263
RQTL +SAT K+V+ LAR L DP + + +E + A ++ Q V IVP ++K D L
Sbjct: 249 HRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLW 308
Query: 264 KLLEDIMDGSRILIFMDTKKG---CDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKS 320
++ ++ SRIL+F+ TKK + +LR G P S+HG SQ +R V S+F
Sbjct: 309 SFIKTHLN-SRILVFLSTKKQVKFVHEAFNKLR-PGIPLKSLHGKMSQEKRMGVYSQFIE 366
Query: 321 GKSPIMTATDVAARGLDV-KDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAA 379
+S ++ TDV ARGLD K V +V+ D P + Y+H F T +
Sbjct: 367 RQS-VLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPS 425
Query: 380 NARFAKEL 387
+ ++L
Sbjct: 426 EEKMIEKL 433
>AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3553334-3556646 FORWARD LENGTH=427
Length = 427
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 182/352 (51%), Gaps = 18/352 (5%)
Query: 17 VEGRDVPKPVKTFNDVGFPEYVLE-----EVKKAGFVEPTPIQSQGWPMALKGRDLIGIA 71
V G V K + GF +++L+ + +GF P+ +Q + P A+ G D+I A
Sbjct: 31 VNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
Query: 72 ETGSGKTLAYLLPAIVHVNAQPILDPGDGPI-VLVLAPTRELAVQIQQECTKFGAS-SRI 129
++G GKT ++L + + +P G + LVL TRELA QI E +F
Sbjct: 91 KSGMGKTAVFVLSTLQQI------EPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 144
Query: 130 KSTCIYGGVPKGPQVRDLQKGV--EIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRML 187
K + YGGV +DL K IV+ TPGR++ + +L+ V + +LDE D+ML
Sbjct: 145 KVSVFYGGVNIKIH-KDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 203
Query: 188 D-MGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAI 246
+ + +++I D+Q + +SAT KE+ + +KF+ DP ++ + E H +
Sbjct: 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL 263
Query: 247 KQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 306
Q+ + E +K KL LL D +D ++++IF+ + ++ + L +P++ IH
Sbjct: 264 VQHYIKLSEMEKNRKLNDLL-DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 322
Query: 307 SQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
SQ ER FK G I+ ATD+ RG+D++ V VINYD P S + Y+H
Sbjct: 323 SQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 374
>AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=427
Length = 427
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 182/352 (51%), Gaps = 18/352 (5%)
Query: 17 VEGRDVPKPVKTFNDVGFPEYVLE-----EVKKAGFVEPTPIQSQGWPMALKGRDLIGIA 71
V G V K + GF +++L+ + +GF P+ +Q + P A+ G D+I A
Sbjct: 31 VNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
Query: 72 ETGSGKTLAYLLPAIVHVNAQPILDPGDGPI-VLVLAPTRELAVQIQQECTKFGAS-SRI 129
++G GKT ++L + + +P G + LVL TRELA QI E +F
Sbjct: 91 KSGMGKTAVFVLSTLQQI------EPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 144
Query: 130 KSTCIYGGVPKGPQVRDLQKGV--EIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRML 187
K + YGGV +DL K IV+ TPGR++ + +L+ V + +LDE D+ML
Sbjct: 145 KVSVFYGGVNIKIH-KDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 203
Query: 188 D-MGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAI 246
+ + +++I D+Q + +SAT KE+ + +KF+ DP ++ + E H +
Sbjct: 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL 263
Query: 247 KQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 306
Q+ + E +K KL LL D +D ++++IF+ + ++ + L +P++ IH
Sbjct: 264 VQHYIKLSEMEKNRKLNDLL-DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 322
Query: 307 SQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
SQ ER FK G I+ ATD+ RG+D++ V VINYD P S + Y+H
Sbjct: 323 SQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 374
>AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25472598-25476402
REVERSE LENGTH=788
Length = 788
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 175/333 (52%), Gaps = 13/333 (3%)
Query: 39 LEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPG 98
L+ +K AG+ T +Q P+ LKG+D++ A+TG+GKT+A+LLP+I V P P
Sbjct: 332 LKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPD 391
Query: 99 DG--PIV-LVLAPTRELAVQIQQEC-TKFGASSRIKSTCIYGGVPKGPQVRDLQKG-VEI 153
+ PI+ LV+ PTRELA Q E T I + GG G + + +Q +I
Sbjct: 392 NKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQI 451
Query: 154 VIATPGRLIDMLES---HHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLY 210
++ATPGRL D +E+ T L+ V LVLDEAD +LDMGF I +I+S + +RQT
Sbjct: 452 LVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFL 511
Query: 211 WSATWPKEVEQLARKFLYDPYKVI--IGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLED 268
+SAT P+EV Q+ L ++ + + ++ + ++Q I + + L LL +
Sbjct: 512 FSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSLLYTLLRE 571
Query: 269 IMDGS---RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPI 325
+ G+ ++++F T + L IH K Q+ R V +EF+ K I
Sbjct: 572 HIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLI 631
Query: 326 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
+ +DV+ARG+D DV V+ P E Y+H
Sbjct: 632 LVTSDVSARGVDYPDVTLVLQVGLPKDREQYIH 664
>AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26897235-26899381 REVERSE LENGTH=558
Length = 558
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 187/352 (53%), Gaps = 16/352 (4%)
Query: 20 RDVPKPVKTFNDVGFP--EYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGK 77
+ + K + F+++ P E ++E + ++GF TP+Q++ P +D++ A TGSGK
Sbjct: 7 KTITKALPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGK 66
Query: 78 TLAYLLPAIVHVNAQPILDPGDGPIV-LVLAPTRELAVQIQQECTKFGAS-SRIKSTCIY 135
TLA+LLP I + P ++ ++++PTREL+ QI + F ++ + S +
Sbjct: 67 TLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLV 126
Query: 136 GGVPKGPQVRDLQK-GVEIVIATPGRLIDMLES-HHTNLRRVTYLVLDEADRMLDMGFDP 193
GG + L++ G ++I TPGRL DM++ + R + L+LDEADR+LDMGF
Sbjct: 127 GGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQK 186
Query: 194 QIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIV 253
Q+ I+S++ R+T +SAT + V LA+ L + +VI G+E K+ + Y + +
Sbjct: 187 QVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAES-KSKTSSGLYCEYL 245
Query: 254 PEK--QKYDKLVKLLEDIMDGSRILIFMDTKKGCDQ-----ITRQLRMDGWPALSIHGDK 306
+ QK +LV LL + + ++ FM C +++ + S HG
Sbjct: 246 KCEADQKSSQLVHLLIENKNKKLVVFFMTC--ACVDYWGLVLSKIPTLKSISFFSTHGKM 303
Query: 307 SQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
Q RD L+ F S ++ TDVAARGLD+ + YV+ YD P + ++H
Sbjct: 304 DQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIH 355
>AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWARD
LENGTH=621
Length = 621
Score = 164 bits (416), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 180/351 (51%), Gaps = 18/351 (5%)
Query: 24 KPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLL 83
K V+ F ++G E V+ +++ PT IQ G P ++ + ++ + TGSGKTLAYLL
Sbjct: 109 KLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLL 168
Query: 84 PAIVHVNAQPILDPGDG-----PIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGV 138
P IV + + + G P +VL PTREL+ Q+ + +R +S + GG
Sbjct: 169 P-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGS 227
Query: 139 PKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKI 198
PQ L +++V+ TPGR++ +E + + YLVLDEAD M D GF P+IRK
Sbjct: 228 RIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKF 287
Query: 199 VSQIRPDR--------QTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYV 250
++ + QT+ +AT V++L + + + K +A ++
Sbjct: 288 LAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFI 347
Query: 251 DIVPEKQKYDKLVKLLE-DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQA 309
+ + K + L+++LE + GS++++F +T + L + ++ HG+
Sbjct: 348 KLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAE 407
Query: 310 ERDWVLSEFK--SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
+R L +FK G P + TD+AARGLD+ DV +V+ +DFP + DY+H
Sbjct: 408 QRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLH 457
>AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:2790341-2794059
FORWARD LENGTH=850
Length = 850
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 168/333 (50%), Gaps = 13/333 (3%)
Query: 39 LEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP--ILD 96
L+ +K AGF T +Q P+ L+G+D++ A+TG+GKT+A+LLPAI V P D
Sbjct: 394 LKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRD 453
Query: 97 PGDGPI-VLVLAPTRELAVQIQQEC-TKFGASSRIKSTCIYGGVPKGPQVRDLQKG-VEI 153
PI VLV+ PTRELA Q E T I + GG + R +Q +I
Sbjct: 454 SRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQI 513
Query: 154 VIATPGRLIDMLESHH---TNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLY 210
++ATPGRL D +E+ T L V LVLDEAD +LDMGF I +I++ + RQT
Sbjct: 514 LVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFL 573
Query: 211 WSATWPKEVEQLARKFLYDPYKVI--IGSEDLKANHAIKQYVDIVPEKQKYDKLVKLL-E 267
+SAT P+EV Q+ L ++ I + + + + Q I + + L LL E
Sbjct: 574 FSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKE 633
Query: 268 DIMDGS--RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPI 325
I D +++IF T + L IH K Q+ R V EF+ K+ I
Sbjct: 634 HIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAII 693
Query: 326 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
+ +DV+ARG+D DV V+ P E Y+H
Sbjct: 694 LVTSDVSARGVDYPDVSLVVQMGLPSDREQYIH 726
>AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:16976783-16979392
FORWARD LENGTH=609
Length = 609
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 194/430 (45%), Gaps = 87/430 (20%)
Query: 13 REITVEGRDVPKPVK------TFNDVGFPEYVLEEVK-KAGFVEPTPIQSQGWPMALKGR 65
RE E +D K +F+ +G + +++K + GF PT +Q+Q P+ L GR
Sbjct: 9 RETKQEAKDASKAKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGR 68
Query: 66 DLIGIAETGSGKTLAYLLPAIVHVNAQ-PILDPGDGPIVLVLAPTRELAVQIQQECTKFG 124
D++ A TG+GKT+AYL P I H+ P +D G LV+ PTREL +Q+ + K
Sbjct: 69 DVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLL 128
Query: 125 ASSR-IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----HTNLRRVTYLV 179
I + GG K + L+KG+ I+IATPGRL+D L++ H NLR +++
Sbjct: 129 HRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLR---WVI 185
Query: 180 LDEADRMLDMGFDPQIRKIVS-------------QIRP---DRQTLYWSATWPKEVEQLA 223
DEAD +L++G+ +I +I+ I P +Q L SAT +V LA
Sbjct: 186 FDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLA 245
Query: 224 RKFLYDPYKVIIGSEDLKANHAIK----------------------------------QY 249
+ L DP + + + L+ N +I+ Q
Sbjct: 246 KLSLDDPVMIGLDNTKLQQNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQR 305
Query: 250 VDIVPEKQKYDKLVKLLEDIMD---GSRILIFMDTKKGCDQITRQLRMDGWP-------- 298
VP + L+ +L+++ + ++++F T+ D L WP
Sbjct: 306 YLRVPCGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEE 365
Query: 299 ----------ALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYD 348
+HG Q +R FK+ K ++ +TDVAARGLD V+ +I YD
Sbjct: 366 GTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYD 425
Query: 349 FPGSLEDYVH 358
PG +YVH
Sbjct: 426 CPGEATEYVH 435
>AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase
family protein | chr5:2794540-2797548 FORWARD LENGTH=563
Length = 563
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 172/345 (49%), Gaps = 17/345 (4%)
Query: 29 FNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 88
F+ L+ ++ AGF T +Q P+ L+G+D++ A+TG+GKT+A+LLP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 89 V-NAQPILDPGDGP--IVLVLAPTRELAVQIQQECT---KFGASSRIKSTCIYGGVPKGP 142
V A P P IVLV+ PTRELA Q E K+ S I + GG
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPS--IGVQVVIGGTKLPT 199
Query: 143 QVRDLQKG-VEIVIATPGRL---IDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKI 198
+ R LQK +I++ATPGRL ID T L V LVLDEAD +LDMGF +I +I
Sbjct: 200 EQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERI 259
Query: 199 VSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSED--LKANHAIKQYVDIVPEK 256
++ + RQT +SAT EV Q+ L ++ + ++ + + + Q I
Sbjct: 260 IAAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLD 319
Query: 257 QKYDKLVKLL-EDIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDW 313
+ + L LL + I D G +++IF T + L IH K Q+ R
Sbjct: 320 RHFSLLYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTR 379
Query: 314 VLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
V EF+ KS I+ +DV+ARG+D DV V+ P E Y+H
Sbjct: 380 VSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIH 424
>AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=468
Length = 468
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 182/393 (46%), Gaps = 59/393 (15%)
Query: 17 VEGRDVPKPVKTFNDVGFPEYVLE-----EVKKAGFVEPTPIQSQGWPMALKGRDLIGIA 71
V G V K + GF +++L+ + +GF P+ +Q + P A+ G D+I A
Sbjct: 31 VNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
Query: 72 ETGSGKTLAYLLPAIVHVNAQPILDPGDGPI-VLVLAPTRELAVQIQQECTKFGAS-SRI 129
++G GKT ++L + + +P G + LVL TRELA QI E +F
Sbjct: 91 KSGMGKTAVFVLSTLQQI------EPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 144
Query: 130 KSTCIYGGVPKGPQVRDLQKGV--EIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRML 187
K + YGGV +DL K IV+ TPGR++ + +L+ V + +LDE D+ML
Sbjct: 145 KVSVFYGGVNIKIH-KDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 203
Query: 188 D-MGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFL------------------- 227
+ + +++I D+Q + +SAT KE+ + +KF+
Sbjct: 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDGLRTLSGDSVALWWVGF 263
Query: 228 ----------------------YDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKL 265
DP ++ + E H + Q+ + E +K KL L
Sbjct: 264 GSGYCVFPRFHRARMGLNVPSNIDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDL 323
Query: 266 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPI 325
L D +D ++++IF+ + ++ + L +P++ IH SQ ER FK G I
Sbjct: 324 L-DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRI 382
Query: 326 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
+ ATD+ RG+D++ V VINYD P S + Y+H
Sbjct: 383 LVATDLVGRGIDIERVNIVINYDMPDSADTYLH 415
>AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3554272-3556646 FORWARD LENGTH=344
Length = 344
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 157/298 (52%), Gaps = 13/298 (4%)
Query: 66 DLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPI-VLVLAPTRELAVQIQQECTKFG 124
D+I A++G GKT ++L + + +P G + LVL TRELA QI E +F
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQI------EPSPGQVSALVLCHTRELAYQICNEFVRFS 55
Query: 125 AS-SRIKSTCIYGGVPKGPQVRDLQKGV--EIVIATPGRLIDMLESHHTNLRRVTYLVLD 181
K + YGGV +DL K IV+ TPGR++ + +L+ V + +LD
Sbjct: 56 TYLPDTKVSVFYGGVNIKIH-KDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILD 114
Query: 182 EADRMLD-MGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDL 240
E D+ML+ + +++I D+Q + +SAT KE+ + +KF+ DP ++ + E
Sbjct: 115 ECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAK 174
Query: 241 KANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL 300
H + Q+ + E +K KL LL D +D ++++IF+ + ++ + L +P++
Sbjct: 175 LTLHGLVQHYIKLSEMEKNRKLNDLL-DALDFNQVVIFVKSVSRAAELNKLLVECNFPSI 233
Query: 301 SIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
IH SQ ER FK G I+ ATD+ RG+D++ V VINYD P S + Y+H
Sbjct: 234 CIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 291
>AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:3576483-3580396 FORWARD LENGTH=845
Length = 845
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/357 (31%), Positives = 177/357 (49%), Gaps = 18/357 (5%)
Query: 18 EGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGK 77
E D K F++ L+ + +G V+ T +Q L G+D + A+TG+GK
Sbjct: 366 EPHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGK 425
Query: 78 TLAYLLPAIVHVNAQPILDPGDG-----PI-VLVLAPTRELAVQIQQECTKFGASSR-IK 130
++A+LLPAI V ++ G G PI VL+L PTRELA QI E + I
Sbjct: 426 SMAFLLPAIETV--LKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIG 483
Query: 131 STCIYGGVP-KGPQVRDLQKGVEIVIATPGRLIDMLESHH---TNLRRVTYLVLDEADRM 186
+ GG + Q R + +I+IATPGRL+D +E+ + L + ++DEAD +
Sbjct: 484 VQTLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLL 543
Query: 187 LDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVI--IGSEDLKANH 244
LD+GF + KI+ + RQ+L +SAT PKEV ++++ L + I IG ++ +
Sbjct: 544 LDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHD 603
Query: 245 AIKQYVDIVPEKQKYDKLVKLLEDIMDGS---RILIFMDTKKGCDQITRQLRMDGWPALS 301
+KQ + P + + + LL++ ++ +I++F T + LR
Sbjct: 604 KVKQSCIVAPHESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVRE 663
Query: 302 IHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
IH K Q R V EFK I+ +DV+ARG++ DV VI P E Y+H
Sbjct: 664 IHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIH 720
>AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:23463284-23466451 REVERSE LENGTH=798
Length = 798
Score = 151 bits (382), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 113/358 (31%), Positives = 179/358 (50%), Gaps = 20/358 (5%)
Query: 18 EGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGK 77
E D K F++ L+ + +G ++ T +Q L G+D + A+TG+GK
Sbjct: 319 EPHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGK 378
Query: 78 TLAYLLPAIVHVNAQPILDPGDG-----PI-VLVLAPTRELAVQIQQE---CTKFGASSR 128
++A+LLPAI V ++ G G PI L+L PTRELA QI E KF
Sbjct: 379 SMAFLLPAIETV--LKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIG 436
Query: 129 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHH---TNLRRVTYLVLDEADR 185
++ T I G K Q R + +I+IATPGRL+D +E+ + L + ++DEAD
Sbjct: 437 VQ-TLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADL 495
Query: 186 MLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVI--IGSEDLKAN 243
+LD+GF + KI+ + RQ+L +SAT PKEV ++++ L + I IG ++ +
Sbjct: 496 LLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETH 555
Query: 244 HAIKQYVDIVPEKQKYDKLVKLLEDIMDGS---RILIFMDTKKGCDQITRQLRMDGWPAL 300
++Q + P + + + LL++ ++ + +I++F T + LR
Sbjct: 556 DKVRQSCIVAPHESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVR 615
Query: 301 SIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
IH K Q R V EFK I+ +DV+ARG++ DV VI P E Y+H
Sbjct: 616 EIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIH 673
>AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:1612077-1615195
FORWARD LENGTH=593
Length = 593
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 177/343 (51%), Gaps = 27/343 (7%)
Query: 38 VLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDP 97
++E + ++ F TP+Q+ P+ +D+ A TGSGKTLA+++P + + P
Sbjct: 27 IIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP 86
Query: 98 GDGPIV-LVLAPTRELAVQIQQECTKFGAS-SRIKSTCIYGGVPKGPQVRDLQK-GVEIV 154
++ ++++PTREL+ QI F ++ + + S + GG ++ +++ G ++
Sbjct: 87 KPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVL 146
Query: 155 IATPGRLIDMLESHHT-NLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSA 213
I TPGRL D++E + R + L+LDEADR+L+MGF Q+ I+S++ R+T +SA
Sbjct: 147 IGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSA 206
Query: 214 TWPKEVEQLARKFLYDPYKVII-------GSEDLKANHAIK----QYVDIVPEKQKYDKL 262
T + VE+LA+ L +P +V + S+ L + +Y++ +K K +L
Sbjct: 207 TQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADK-KSSQL 265
Query: 263 VKLLEDIMDGSRILIFMDTKKGCDQITR-QLRMDGWPALS------IHGDKSQAERDWVL 315
V LL D I+ FM C + L + PAL IHGD Q RD L
Sbjct: 266 VDLLIKNSDKKLIVFFM----TCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKAL 321
Query: 316 SEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
+ F S + TDVAARGLD+ + YV+ YD P + H
Sbjct: 322 ASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNH 364
>AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:4351888-4353543 FORWARD LENGTH=551
Length = 551
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 106/392 (27%), Positives = 176/392 (44%), Gaps = 68/392 (17%)
Query: 27 KTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 86
K+F ++G P+ +L+ +++ GF PT +QS P +KG D + + TGSGKTLAYLLP +
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
Query: 87 VHV--------NAQPILDPGDGPIVLVLAPTRELAVQIQQECTK-FGASSRIKSTCIYGG 137
+ ++ D +++AP+REL +QI +E K G R + GG
Sbjct: 170 SEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGG 229
Query: 138 VPKGPQVRDLQKGV-EIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIR 196
+ Q L+K IV+ TPGR+ ++ + + +LVLDE D +L F I
Sbjct: 230 ANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIH 289
Query: 197 KIVSQI--------------RPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKA 242
+I+ + R +RQT+ SAT P V + A+ + ++P V +A
Sbjct: 290 RILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLV-------QA 342
Query: 243 NH------------------------------------AIKQYVDIVPEKQKYDKLVKLL 266
N A+K Y I + K D L + +
Sbjct: 343 NKVTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCV 402
Query: 267 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 326
+D ++ FM+ + + +L G + +HGD + R VL +FK+G+ ++
Sbjct: 403 H-ALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVL 461
Query: 327 TATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
+++ARGLDV + V+N + P Y H
Sbjct: 462 VTNELSARGLDVAECDLVVNLELPTDAVHYAH 493
>AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr3:19687968-19690423 FORWARD LENGTH=496
Length = 496
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 162/317 (51%), Gaps = 15/317 (4%)
Query: 47 FVEPTPIQSQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVL 104
F +P+ IQ+ PM + + LI A GSGKT ++L + V+ P L P L
Sbjct: 112 FEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQAL 166
Query: 105 VLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGP--QVRDLQKGVEIVIATPGRLI 162
+ PTRELA Q + K G + I + +G R +VI TPG L
Sbjct: 167 CICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGTLK 226
Query: 163 DMLESHHTNLRRVTYLVLDEADRMLDM-GF---DPQIRKIVSQIRPDRQTLYWSATWPKE 218
+ L + LV DEAD ML GF +I K + ++ P+ Q L +SAT+ +
Sbjct: 227 KWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNET 286
Query: 219 VEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVK-LLEDIMDGSRILI 277
V+ + + DP ++ + EDL A ++KQY + P++Q +++K + ++ D + +I
Sbjct: 287 VKDFVARTVKDPNQLFVKREDL-ALDSVKQYKVVCPKEQNKIEVIKDQIMELGDIGQTII 345
Query: 278 FMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLD 337
F+ TK ++ + L G+ S+HG+ ++++RD ++ EFK + ++ ATDV ARG D
Sbjct: 346 FVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFD 405
Query: 338 VKDVKYVINYDFPGSLE 354
+ V V+NY+ P E
Sbjct: 406 QQRVNLVVNYNLPTKYE 422
>AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=486
Length = 486
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 111/410 (27%), Positives = 181/410 (44%), Gaps = 75/410 (18%)
Query: 17 VEGRDVPKPVKTFNDVGFPEYVLE-----EVKKAGFVEPTPIQSQGWPMALKGRDLIGIA 71
V G V K + GF +++L+ + +GF P+ +Q + P A+ G D+I A
Sbjct: 31 VNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
Query: 72 ETGSGKTLAYLLPAIVHVNAQPILDPGDGPI-VLVLAPTRELAVQIQQECTKFGAS-SRI 129
++G GKT ++L + + +P G + LVL TRELA QI E +F
Sbjct: 91 KSGMGKTAVFVLSTLQQI------EPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 144
Query: 130 KSTCIYGGVPKGPQVRDLQKGV--EIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRML 187
K + YGGV +DL K IV+ TPGR++ + +L+ V + +LDE D+ML
Sbjct: 145 KVSVFYGGVNIKIH-KDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 203
Query: 188 D-MGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYD----------------- 229
+ + +++I D+Q + +SAT KE+ + +KF+ D
Sbjct: 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDFLENETVSVRLFSFGVE 263
Query: 230 ---------PYKVIIGSEDLKANHAIKQYVDIVPEK------------------------ 256
+ V++ +A I EK
Sbjct: 264 NSEWRLCSFGFIVLVWVSMFRAILMFHSKTHIFEEKRWTRISPMEIYVDDEAKLTLHGLV 323
Query: 257 QKYDKLVKL--------LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQ 308
Q Y KL ++ L D +D ++++IF+ + ++ + L +P++ IH SQ
Sbjct: 324 QHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 383
Query: 309 AERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
ER FK G I+ ATD+ RG+D++ V VINYD P S + Y+H
Sbjct: 384 EERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 433
>AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26870262-26872152 REVERSE LENGTH=465
Length = 465
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 159/323 (49%), Gaps = 44/323 (13%)
Query: 34 FPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP 93
E ++E + ++GF TP+Q++ P +D++ A TGSGKTLA+LLP I +
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 83
Query: 94 ILDPGDGPIV-LVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVR-DL---- 147
P ++ ++++PTREL+ QI K + R+ K +V D+
Sbjct: 84 SYPPKPHQVMGVIISPTRELSAQIH----KVARAVRL-------DFAKCREVEADMNTLE 132
Query: 148 QKGVEIVIATPGRLIDMLES-HHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDR 206
++G ++I TPGRL DM++ + R + L+LDEADR+LDMGF Q+ I+S++ R
Sbjct: 133 EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQR 192
Query: 207 QTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLL 266
+T +SAT + V LA+ L +PY +K D QK +LV LL
Sbjct: 193 RTGLFSATQTQAVADLAKAGLRNPY--------------LKCEAD-----QKSSQLVHLL 233
Query: 267 EDIMDGSRILIFMDTKKGCDQ-----ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSG 321
+ + ++ FM C I++ + HG Q RD L+ F
Sbjct: 234 IENKNKKLVVFFMTC--ACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEA 291
Query: 322 KSPIMTATDVAARGLDVKDVKYV 344
S ++ TDVAARGLD+ + Y+
Sbjct: 292 SSGVLLCTDVAARGLDIPGIVYI 314
>AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:2201531-2204662 FORWARD LENGTH=781
Length = 781
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 177/363 (48%), Gaps = 39/363 (10%)
Query: 27 KTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 86
KTF ++G E +++ +K+ F P IQ+ + + G+ I ++GSGKTLAYL+P I
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 87 VHVNAQPIL-----DPGDGPIVLVLAPTRELAVQIQQECTKFGASSR-IKSTCIYGGVPK 140
+ + + PG P V+VL PT ELA Q+ C S +S + GG +
Sbjct: 434 QRLREEELQGHSKSSPG-CPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQ 492
Query: 141 GPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRML-DMGFDPQIRKIV 199
Q+ +L++GV+++IATPGR ++ L + +LDE D + D F+ ++ ++
Sbjct: 493 RTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLI 552
Query: 200 SQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYV--------- 250
+ Q L+ +AT P E+ + D +V++G + ++A+++++
Sbjct: 553 NSSPVTAQYLFVTATLPLEIYNKLVEVFPD-CEVVMGPRVHRVSNALEEFLVDCSGDDNA 611
Query: 251 DIVPEKQKYDKLVKLLEDIMDG--SRILIFMDTKKGC----------DQITRQLRMDGWP 298
+ PE +K LL+ + + S+ +IF + + C D+ RQL +
Sbjct: 612 EKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHV---- 667
Query: 299 ALSIHGDKSQAERDWVLSEFKSGK----SPIMTATDVAARGLDVKDVKYVINYDFPGSLE 354
L H SQ R + EF S + S + TD A+RG+D V +V+ +DFP
Sbjct: 668 -LPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPS 726
Query: 355 DYV 357
+YV
Sbjct: 727 EYV 729
>AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:5738020-5743042
REVERSE LENGTH=826
Length = 826
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 182/397 (45%), Gaps = 85/397 (21%)
Query: 38 VLEEVKKAGFVEPTPIQSQGWPMA-LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILD 96
+++ + + F EPT IQ + +A +G+D+IG AETGSGKTLA+ LP + Q +LD
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPIL-----QRLLD 255
Query: 97 -------------------PGDGPI-VLVLAPTRELAVQIQQECTKFGASSRIKSTCIYG 136
DG + L++ PTRELA+Q+ + + +K I G
Sbjct: 256 EREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVG 315
Query: 137 GVPKGPQVRDLQKGVEIVIATPGRLIDML---ESHHTNLRRVTYLVLDEADRMLDMGFDP 193
G+ Q R L++ EIV+ATPGRL +++ E H L +++ VLDEADRM++ G
Sbjct: 316 GMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFR 375
Query: 194 QIRKIVSQI------------------------RPDRQTLYWSATWP------------- 216
+++ I+ + + RQT +SAT
Sbjct: 376 ELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGS 435
Query: 217 -----------KEVEQLA-RKFLYDPYKVIIGSEDLKANHAIKQYVD---IVPEKQKYDK 261
+E L+ R + D +I DL + ++ I E+++ D
Sbjct: 436 SKSKQSSSGEVNSIEVLSERAGMRDNVAII----DLTTTSILAPKIEESFIKCEEKEKDA 491
Query: 262 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSG 321
+ + + R ++F + I+ L++ G ++ + Q R + F++
Sbjct: 492 YLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRAS 551
Query: 322 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
++ I+ ATD+ ARG+D+K+V+ +I+Y P S E YVH
Sbjct: 552 ENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVH 588
>AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:6461444-6463687
FORWARD LENGTH=472
Length = 472
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 173/377 (45%), Gaps = 48/377 (12%)
Query: 16 TVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGS 75
+V VP ++ PE++L +++ GFV PT IQ + P GRD I A+TGS
Sbjct: 65 SVTETTVPLTLRQICQGFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGS 124
Query: 76 GKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKST-CI 134
GKTL YLL +N Q +++ PTREL +Q+ + A S I C
Sbjct: 125 GKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCT 179
Query: 135 YGGVPKGPQVRDLQKGVE-----IVIATPGRLIDMLESHHTNLRRVTYLVLDEADRML-- 187
+ G +R + ++ I++AT L MLE H + V LV+DE D +
Sbjct: 180 VMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYS 239
Query: 188 --DMGFDPQIRKIVSQIRP--DRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKAN 243
+G +RK+++ RQT++ SA+ P+ + F++D + D+
Sbjct: 240 SKQVG---SVRKLLTSFSSCDKRQTVFASASIPQH-----KHFVHDCIQQKWTKRDVVHV 291
Query: 244 HA----------IKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMD----TKKGCDQIT 289
H + ++V + + K+ L+ LLE S I+ + +KK + +
Sbjct: 292 HVSAIMPMPLCLLHRFV-MCEKTNKHQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPS 350
Query: 290 RQLRMD--------GWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDV 341
L M+ L + GD + R L+E + G ++ +TD+AARG+D+ +
Sbjct: 351 TTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPET 410
Query: 342 KYVINYDFPGSLEDYVH 358
++ N+D P ++ DY+H
Sbjct: 411 THIFNFDLPQTVTDYLH 427
>AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:16631661-16634834
FORWARD LENGTH=626
Length = 626
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 175/379 (46%), Gaps = 49/379 (12%)
Query: 27 KTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 86
K+F ++G ++ + K G +PT IQ P L+G+D++ A+TGSGKTLAYLLP +
Sbjct: 46 KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLL 105
Query: 87 VHV-NAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCI-YGGVPKGPQV 144
+ +A + P +L P+REL Q+ E + R++ + +
Sbjct: 106 QKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDM 165
Query: 145 RDLQKGV-EIVIATPGRL-----IDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKI 198
R+ G+ EI+++TP + +LE + ++ LVLDEAD +L G++ +R +
Sbjct: 166 RNALAGLPEILVSTPACIPKCFAAGVLEPTAVS-ESLSILVLDEADLLLSYGYEDNLRSV 224
Query: 199 VSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHA----IKQYVDIVP 254
S I Q L SAT +VE+L + L++P V+ +ED A ++Q+
Sbjct: 225 TSIIPRRCQCLLMSATTSSDVEKLKKLILHNPI-VLTLTEDNDKEEAVPSNVQQFWISCS 283
Query: 255 EKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWV 314
+ K ++ LL+ + +ILIF++T ++ L G + ++G+ Q R +
Sbjct: 284 AQDKLLHILALLKLEVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLHI 343
Query: 315 LSEFKSGKSPIMTATDVAA-----------------------------------RGLDVK 339
L +F +G + ATD + RG+D K
Sbjct: 344 LEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFK 403
Query: 340 DVKYVINYDFPGSLEDYVH 358
V VIN+D P S+ Y+H
Sbjct: 404 KVHTVINFDMPQSVTGYIH 422
>AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 |
chr4:9001426-9004534 FORWARD LENGTH=522
Length = 522
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 153/357 (42%), Gaps = 68/357 (19%)
Query: 65 RDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQ------- 117
RD+ + TGSGKTL+Y LP + + ++P+ LV+ PTR+LA+Q++
Sbjct: 73 RDICVNSPTGSGKTLSYALPIVQLLASRPV----RCLRALVVLPTRDLALQVKDVFDAIA 128
Query: 118 ------------QECTKFGASSRIKSTCIYGGVPKGPQ--VRDLQKGVEIVIATPGRLID 163
Q S IK+ + G+ P ++L+ V+I++ATPGRL+D
Sbjct: 129 PAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMD 188
Query: 164 MLESHH-TNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSAT-------- 214
+ + L + YLV+DE DR+L + + ++ + +L+ S T
Sbjct: 189 HINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFG 248
Query: 215 ------------------WPKEVEQ-LARKFLYDPYKVI-----------IGSEDLKANH 244
+P+ V+ L+ DP K+I G +
Sbjct: 249 SLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPE 308
Query: 245 AIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP---ALS 301
++ I K LV LL+ +G + +IF + + ++ + L G P A
Sbjct: 309 KLECLRLICETGMKPVYLVALLKS-WEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKE 367
Query: 302 IHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
G +Q+ R L F+ G ++ A+D RG+DVK V VINYD P + ++H
Sbjct: 368 YSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIH 424
>AT2G28600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:12251845-12254672
FORWARD LENGTH=502
Length = 502
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 131/311 (42%), Gaps = 20/311 (6%)
Query: 98 GDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDLQKGVE--IVI 155
G+ P +L L P++ A Q++ C I + ++ G P Q+ L K VE ++
Sbjct: 194 GNSPFLLYLVPSQSKASQVRSVCKALKGIG-IHTVSLHQGAPLDHQISGL-KSVEPEFIV 251
Query: 156 ATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATW 215
ATP RL++++ ++ V+ LV+DE + G+ ++ I I QT+ ++ ++
Sbjct: 252 ATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSF 311
Query: 216 PKEVEQLARKFLYDPYKVIIGSEDLKAN-HAIKQYVDIVPEKQKYDKLVKLLEDIMDGSR 274
+ + FL + +E + + I Q V + ++K KL K + + S
Sbjct: 312 SASIIPAVQSFLGGSVNRVTVNESVASQGSCITQTVSVCASEEK--KLQKFAKHLDSSSS 369
Query: 275 ILIFMDTK-KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAA 333
LI++ TK + +I L++ G D LSE K + P+ D
Sbjct: 370 KLIYIVTKEESFKKIMAILKLKGISV--------STSSDSKLSEVKKSRKPVAHLIDFEQ 421
Query: 334 RGLDV-KDVKYVINYDFPGSLEDYVHXXXXXXXXXXXXXXXXFFTAANARF--AKELITI 390
V +D + V+ DF S+E Y + T +A A L+ +
Sbjct: 422 LDTTVMRDSETVLLPDFFPSIEIYTQILTSMARESAHGVLHSYITEKDAASYQAGPLVNV 481
Query: 391 LEEAGQRVSPD 401
LE GQ V PD
Sbjct: 482 LENCGQNV-PD 491
>AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:22090369-22092885 REVERSE LENGTH=581
Length = 581
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 36/224 (16%)
Query: 28 TFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV 87
++ +G + V ++ +GF P+ Q+ P L G+D+I AETGSGKT YL P I
Sbjct: 81 SWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIID 140
Query: 88 HVNA----QPILDPGDGP-----IVLVLAPTRELAVQIQQECTKFGASS-----RIKSTC 133
+ + + + P I L+L P L Q+ + R+++ C
Sbjct: 141 QLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVC 200
Query: 134 IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTN----LRRVTYLVLDEADRMLDM 189
G P + +I+++TP L++ +E LR V Y+V DEAD +L
Sbjct: 201 GSQGWP--------DRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCG 252
Query: 190 GFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKV 233
F QI ++++ +R D K+V +LA+ L P ++
Sbjct: 253 SFQNQIIRLINMLRFDE----------KQVSRLAKSNLGRPMEI 286
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 105/235 (44%), Gaps = 21/235 (8%)
Query: 194 QIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYK--VIIGSEDLKANH-AIKQ-Y 249
++RKI ++ +Q ++ +AT P ++ A L ++ V + L N +KQ +
Sbjct: 344 RVRKIYTR---SKQYIFIAATLPVNGKKTAGGILKHMFQDAVWVSGNFLHRNSPRLKQKW 400
Query: 250 VDIVPEKQKYDKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 307
V++ + Q D L++ +++ + R ++F +T + + + L H +
Sbjct: 401 VEVTVDSQ-VDALIEAVKNNNNTNTERTMVFANTVEAVEAVADILEKASIQCYRYHKNHK 459
Query: 308 QAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHXXXXXXXXX 367
ER +L++F+ + TD AARG+DV +V +VI DF S D++H
Sbjct: 460 LDERANILADFRE-TGGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAG 518
Query: 368 XXXXXXXFFTAANARFAKELITILEEAGQRVSPDLAAMGRGAPPPPSGGFRDRGK 422
+T AN ++L+ + EA + P A R GFR++ K
Sbjct: 519 QYGTVTSLYTEAN----RDLVEAIREAVKMGQPVETAFSR------KRGFRNKVK 563
>AT5G19210.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:6462100-6463687
FORWARD LENGTH=315
Length = 315
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 108/234 (46%), Gaps = 37/234 (15%)
Query: 153 IVIATPGRLIDMLESHHTNLRRVTYLVLDEADRML----DMGFDPQIRKIVSQIRP--DR 206
I++AT L MLE H + V LV+DE D + +G +RK+++ R
Sbjct: 46 ILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVG---SVRKLLTSFSSCDKR 102
Query: 207 QTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHA----------IKQYVDIVPEK 256
QT++ SA+ P+ + F++D + D+ H + ++V + +
Sbjct: 103 QTVFASASIPQH-----KHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFV-MCEKT 156
Query: 257 QKYDKLVKLLEDIMDGSRILIFMD----TKKGCDQITRQLRMD--------GWPALSIHG 304
K+ L+ LLE S I+ + +KK + + L M+ L + G
Sbjct: 157 NKHQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEG 216
Query: 305 DKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 358
D + R L+E + G ++ +TD+AARG+D+ + ++ N+D P ++ DY+H
Sbjct: 217 DMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLH 270
>AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase
(RECQl4A) | chr1:3648032-3654997 REVERSE LENGTH=1188
Length = 1188
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 141/324 (43%), Gaps = 41/324 (12%)
Query: 52 PIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRE 111
P Q + + G D+ + TG GK+L Y LPA++ G I LV++P
Sbjct: 456 PNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALIC-----------GGITLVISP--- 501
Query: 112 LAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDLQK------GVEIVIATPGRLI--D 163
L IQ + + I + + G+ Q++ Q+ +++ TP ++ D
Sbjct: 502 LVSLIQDQIMNL-LQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSD 560
Query: 164 MLESHHTNLRR---VTYLVLDEADRMLDMGFD----PQIRKIVSQIRPDRQTLYWSATWP 216
L H NL + V+DEA + G D Q I+ Q P+ L +AT
Sbjct: 561 SLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATAT 620
Query: 217 KEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKY----DKLVKLLEDIMDG 272
V++ + L V+ + N + +VP+ +K DK +K E+ D
Sbjct: 621 ASVKEDVVQALGLVNCVVFRQSFNRPN----LWYSVVPKTKKCLEDIDKFIK--ENHFDE 674
Query: 273 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVA 332
I I+ ++ C++++ +L+ G A HG +R ++ +++ + I+ AT
Sbjct: 675 CGI-IYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAF 733
Query: 333 ARGLDVKDVKYVINYDFPGSLEDY 356
G++ DV++VI++ P S+E Y
Sbjct: 734 GMGINKPDVRFVIHHSLPKSIEGY 757
>AT4G35740.1 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase
family protein | chr4:16936233-16940172 FORWARD
LENGTH=713
Length = 713
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 145/319 (45%), Gaps = 35/319 (10%)
Query: 54 QSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAP----- 108
Q + + GRD + TG GK++ Y +PA+ PG IVLV++P
Sbjct: 41 QLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAK--------PG---IVLVVSPLIALM 89
Query: 109 -TRELAVQ---IQQECTKFGASSRIKSTCIYGGVPKG-PQVRDLQKGVEIVIATPGRLID 163
+ +A++ I E ++ +K+ I+ + G P VR L E+ IAT G ++
Sbjct: 90 ENQVMALKEKGIAAEYLSSTQATHVKNK-IHEDLDSGKPSVRLLYVTPEL-IATKGFMLK 147
Query: 164 MLESHHTNLRRVTYLVLDEADRMLDMGFD--PQIRKIVSQIR---PDRQTLYWSATWPKE 218
+ + H L + + +DEA + G D P R++ S +R D L +AT +
Sbjct: 148 LRKLHSRGL--LNLIAIDEAHCISSWGHDFRPSYRQL-STLRDSLADVPVLALTATAAPK 204
Query: 219 VEQLARKFLYDPYKVIIGSEDLKANHAIK-QYVDIVPEKQKYDKLVKLLEDIMDGSRILI 277
V++ L +++ S + N + +Y D++ Y L LL+ + I+
Sbjct: 205 VQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRYKDLL--DNAYTDLGNLLKSCGNICAIIY 262
Query: 278 FMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLD 337
++ + CD ++ L G + + H + R VL ++ S K I+ AT G+D
Sbjct: 263 CLE-RTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGID 321
Query: 338 VKDVKYVINYDFPGSLEDY 356
KDV+ V +++ P S+E +
Sbjct: 322 KKDVRMVCHFNIPKSMESF 340
>AT1G31360.1 | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2 |
chr1:11232422-11237412 FORWARD LENGTH=705
Length = 705
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 128/325 (39%), Gaps = 59/325 (18%)
Query: 62 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQECT 121
+ GRD++ I G GK+L Y LPA++ G LV++P L IQ +
Sbjct: 102 MTGRDVLVIMAAGGGKSLCYQLPAMLR-----------GGTTLVVSPLLSL---IQDQVM 147
Query: 122 KFGAS--SRIKSTCIYGGVPKGPQVRDLQKG---VEIVIATP------GRLIDMLESHHT 170
A S T G + + L+KG ++I+ TP R + LE H
Sbjct: 148 GLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKSKRFMSKLEKCH- 206
Query: 171 NLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLY-------------WSATWPK 217
N R++ + +DEA G D RPD + L +AT +
Sbjct: 207 NAGRLSLISIDEAHCCSQWGHD---------FRPDYKNLSILKTQFPKVPMVALTATATQ 257
Query: 218 EVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVK------LLEDIMD 271
+V+ + L+ P V S + N V EK KLV + E +
Sbjct: 258 KVQNDLIEMLHIPKCVKFVSSVNRPNLFYS-----VREKSAVGKLVVDEIAEFIRESYSN 312
Query: 272 GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDV 331
+++ ++K C+QI LR G A H D R+ V + K ++ T
Sbjct: 313 NESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVA 372
Query: 332 AARGLDVKDVKYVINYDFPGSLEDY 356
G++ DV++VI++ S+E Y
Sbjct: 373 FGMGINKPDVRFVIHHSLSKSMETY 397
>AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicase
L4B | chr1:22431093-22438302 REVERSE LENGTH=1150
Length = 1150
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 134/336 (39%), Gaps = 65/336 (19%)
Query: 52 PIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRE 111
P Q + + G D+ + TG GK+L Y LPA++ I LV++P
Sbjct: 472 PNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALLCAG-----------ITLVISP--- 517
Query: 112 LAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDLQK------GVEIVIATPGRLI--D 163
L IQ + + I + + G+ Q+ LQ+ +++ TP ++ +
Sbjct: 518 LVSLIQDQIMNL-LQTNISAASLSAGMEWAEQLEILQELSSEKSKYKLLYVTPEKVAKSE 576
Query: 164 MLESHHTNLRRVTYL---VLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVE 220
L H L + L V+DEA + G D RPD Q L
Sbjct: 577 SLLRHLEILNSRSLLARFVIDEAHCVSQWGHD---------FRPDYQGLGV--------- 618
Query: 221 QLARKFLYDPYKVIIGSEDLKANHAIKQ---YVDIVPEKQKYD----------KLVKLLE 267
L +KF P + + + Q V+ V +Q ++ K K LE
Sbjct: 619 -LKQKFPNIPMLALTATATTSVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTNKCLE 677
Query: 268 DIMDGSRI-------LIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKS 320
DI R +I+ ++ C+++T LR+ G A HG +R +V ++
Sbjct: 678 DIDKFIRENHFDECGIIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSK 737
Query: 321 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDY 356
+ I+ AT G++ DV++VI++ P S+E Y
Sbjct: 738 DEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGY 773
>AT1G27880.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr1:9708940-9713901 FORWARD LENGTH=911
Length = 911
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 139/325 (42%), Gaps = 46/325 (14%)
Query: 54 QSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELA 113
Q Q M L G + + TG+GK+L Y +PA++ PG I LV++P L
Sbjct: 274 QLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMIL--------PG---ITLVVSPLVSLM 322
Query: 114 VQIQQECTKFGASSRIKSTCIYGGVPKGPQ--------VRDLQKGV-EIVIATPGRL--I 162
+ + + I GG+ Q +R L++G+ +++ +P RL +
Sbjct: 323 IDQLKHLP----------SIIKGGLLSSSQRPEEATETLRKLKEGIIKVLFVSPERLLNV 372
Query: 163 DMLESHHTNLRRVTYLVLDEADRMLD--MGFDPQIRKI-----VSQIRPDRQTLYWSATW 215
+ L +L V+ +V+DEA + + F P ++ S+++ + L +AT
Sbjct: 373 EFLSMFRMSLS-VSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAE-CILAMTATA 430
Query: 216 PKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLED--IMDGS 273
Q L P +I L+ N + V + + D L+ L+E +
Sbjct: 431 TTMTLQAVMSSLEIPSTNLIQKSQLRDNFELS--VSLSGANRMKDLLI-LMESPPYKEIR 487
Query: 274 RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAA 333
I+++ + D I++ LR + A H +R + F S K ++ AT
Sbjct: 488 SIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFG 547
Query: 334 RGLDVKDVKYVINYDFPGSLEDYVH 358
GLD DV VI++ PGS+E+YV
Sbjct: 548 MGLDKGDVGAVIHFSVPGSMEEYVQ 572
>AT3G05740.1 | Symbols: RECQI1 | RECQ helicase l1 |
chr3:1698180-1701228 FORWARD LENGTH=606
Length = 606
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 134/321 (41%), Gaps = 33/321 (10%)
Query: 52 PIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRE 111
P+Q Q +++ +D + TG GK+L Y LPA + ++ P +L L +
Sbjct: 209 PLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISP-----LLSLIQDQI 263
Query: 112 LAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDLQK------GVEIVIATPGRLI--- 162
+A+ + KFG I +T + LQ+ +++ TP ++
Sbjct: 264 VALNL-----KFG----IPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGSS 314
Query: 163 DMLESHHTNLRR--VTYLVLDEADRMLDMGFD--PQIRKI--VSQIRPDRQTLYWSATWP 216
LE+ R+ + V+DEA + G D P R++ + Q P + +AT
Sbjct: 315 SFLETLRCLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATAT 374
Query: 217 KEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRIL 276
+ V Q K L P ++ + N +Y IV K+ +L +LL D +
Sbjct: 375 ESVCQDVLKSLRIPRAPVLKMSFDRINL---KYEVIVKTKEPLKQLQELLRDRFKDQSGI 431
Query: 277 IFMDTKKGCDQITRQLRMDG-WPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARG 335
++ +K C + + L + H +R V ++++G+ I+ AT G
Sbjct: 432 VYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMG 491
Query: 336 LDVKDVKYVINYDFPGSLEDY 356
+D DV++VI+ ++E Y
Sbjct: 492 IDKADVRFVIHNTLSKAVESY 512
>AT4G35740.2 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase
family protein | chr4:16936788-16940172 FORWARD
LENGTH=620
Length = 620
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 13/221 (5%)
Query: 142 PQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFD--PQIRKIV 199
P VR L E+ IAT G ++ + + H L + + +DEA + G D P R++
Sbjct: 34 PSVRLLYVTPEL-IATKGFMLKLRKLHSRGL--LNLIAIDEAHCISSWGHDFRPSYRQL- 89
Query: 200 SQIR---PDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIK-QYVDIVPE 255
S +R D L +AT +V++ L +++ S + N + +Y D++
Sbjct: 90 STLRDSLADVPVLALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRYKDLLD- 148
Query: 256 KQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVL 315
Y L LL+ + I+ ++ + CD ++ L G + + H + R VL
Sbjct: 149 -NAYTDLGNLLKSCGNICAIIYCLE-RTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVL 206
Query: 316 SEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDY 356
++ S K I+ AT G+D KDV+ V +++ P S+E +
Sbjct: 207 DDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESF 247