Miyakogusa Predicted Gene
- Lj3g3v0300710.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0300710.2 Non Chatacterized Hit- tr|I1IC39|I1IC39_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,42.98,0.00000000000001,HELICASE_ATP_BIND_1,Helicase, superfamily
1/2, ATP-binding domain; HELICASE_CTER,Helicase,
C-termina,CUFF.40482.2
(577 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:16... 556 e-158
AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 | chr3:88... 526 e-149
AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 | c... 284 1e-76
AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 | chr5:68... 272 4e-73
AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containin... 247 2e-65
AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:91... 241 1e-63
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 101 1e-21
AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside triph... 97 2e-20
AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside triph... 97 2e-20
AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside triph... 97 2e-20
AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleosid... 97 3e-20
AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domai... 92 8e-19
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:151217... 90 5e-18
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 87 2e-17
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 86 5e-17
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 86 5e-17
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 86 6e-17
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 84 4e-16
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 83 4e-16
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 83 4e-16
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 83 4e-16
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 83 7e-16
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 82 7e-16
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 79 1e-14
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 79 1e-14
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 78 1e-14
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 78 1e-14
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 77 4e-14
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 77 4e-14
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 75 1e-13
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 75 1e-13
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 75 1e-13
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 75 2e-13
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 75 2e-13
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 74 2e-13
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 74 3e-13
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 74 4e-13
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 74 4e-13
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 74 4e-13
AT3G32330.1 | Symbols: | DNA repair protein-related | chr3:1327... 71 2e-12
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 71 2e-12
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 71 2e-12
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 71 3e-12
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 71 3e-12
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 71 3e-12
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 70 3e-12
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 70 5e-12
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 68 2e-11
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 68 2e-11
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 64 3e-10
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 64 4e-10
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helic... 62 1e-09
AT3G54460.1 | Symbols: | SNF2 domain-containing protein / helic... 61 2e-09
AT3G32280.1 | Symbols: | ATP-dependent helicase family protein ... 58 2e-08
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases... 55 1e-07
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 54 4e-07
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 54 4e-07
AT3G31900.1 | Symbols: | ATP-dependent helicase family protein ... 53 5e-07
AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling facto... 52 1e-06
>AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 |
chr1:1618795-1623195 REVERSE LENGTH=1410
Length = 1410
Score = 556 bits (1434), Expect = e-158, Method: Compositional matrix adjust.
Identities = 300/585 (51%), Positives = 379/585 (64%), Gaps = 33/585 (5%)
Query: 3 LHNLKTADPSS-AGGCIISHAPGTGKTRLTIVFLQTYLEVFPKCRPVIIAPAIILRTWED 61
L+ LK + S GGCI+SHAPGTGKTRLTI+FLQ YL+ FP C+PVIIAPA +L TW +
Sbjct: 844 LNELKDFENSDETGGCIMSHAPGTGKTRLTIIFLQAYLQCFPDCKPVIIAPASLLLTWAE 903
Query: 62 EFKKWNIGVPFHNLNTPELSGKEHIDATNEVDCSGSPHKNKDAVRMAKLYSWFKEKSILG 121
EFKKWNI +PFHNL++ + +GKE+ A + + ++ + +RM K+YSW K KSILG
Sbjct: 904 EFKKWNISIPFHNLSSLDFTGKENSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILG 963
Query: 122 ISYQLFEKLAGGNSXXXXXXXXXXXXHASMKENPEPETSVLGKVLLEVPGLLVLDEGHTP 181
ISY L+EKLAG P+ E + ++L+ PGLLVLDE HTP
Sbjct: 964 ISYNLYEKLAGVKDEDKKTKMVREV-------KPDKELDDIREILMGRPGLLVLDEAHTP 1016
Query: 182 RNQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPPELKKFCQSR 241
RNQRS IW LS+++TQKRI+LSGTPFQNNF+EL N L L +P + + + LKK S
Sbjct: 1017 RNQRSCIWKTLSKVETQKRILLSGTPFQNNFLELCNVLGLARPKYLERLTSTLKK---SG 1073
Query: 242 LMQERKASQDFTWEQVSPGNITTGNPSDVKIQQLKLWMDPFVHVHKGSILQENLPGLRDC 301
+ ++ ++ E + G I++LK M PFVHVHKGSILQ +LPGLR+C
Sbjct: 1074 MTVTKRGKKNLGNEINNRG-----------IEELKAVMLPFVHVHKGSILQSSLPGLREC 1122
Query: 302 VLILKPDXXXXXXXXXXXXXXXXXN-----FEHKLVLASVHPSLFLCCTLTEKEESVVDR 356
V++L P EHKL L SVHPSL C ++EKE +D
Sbjct: 1123 VVVLNPPELQRRVLESIEVTHNRKTKNVFETEHKLSLVSVHPSLVSRCKISEKERLSIDE 1182
Query: 357 D---RLEKLRSNPYVGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQLKSNFDWI 413
+L+K+R +P KTRFL+EFV LCE + EKVLVFSQ+IDPL LIM L S F W
Sbjct: 1183 ALLAQLKKVRLDPNQSVKTRFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLVSRFKWN 1242
Query: 414 EGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRVVLLDVVW 473
G+EVL M GKL+QK++Q +I+ FND KS+AKV LASTKACSEGI+LVGASRV+LLDVVW
Sbjct: 1243 PGEEVLYMHGKLEQKQRQTLINEFNDPKSKAKVFLASTKACSEGISLVGASRVILLDVVW 1302
Query: 474 NPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEKDRISELVF--SDRNAEN 531
NP+VERQAISRAYR+GQK++VYTYHL+ + T E KYCKQA+KDRISELVF S R+ +
Sbjct: 1303 NPAVERQAISRAYRIGQKRIVYTYHLVAKGTPEGPKYCKQAQKDRISELVFACSSRHDKG 1362
Query: 532 DRSKSGAVNLEDNVXXXXXXXXXXXXXFGECVVQPKEKYLIESFG 576
+ AV ED V F +VQPKE L+E F
Sbjct: 1363 KEKIAEAVT-EDKVLDTMVEHSKLGDMFDNLIVQPKEADLVEGFS 1406
>AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 |
chr3:8832085-8835722 REVERSE LENGTH=1132
Length = 1132
Score = 526 bits (1354), Expect = e-149, Method: Compositional matrix adjust.
Identities = 279/576 (48%), Positives = 372/576 (64%), Gaps = 45/576 (7%)
Query: 3 LHNLKTADPSSAGGCIISHAPGTGKTRLTIVFLQTYLEVFPKCRPVIIAPAIILRTWEDE 62
++ L + +GGCIISH GTGKTRLT+VFLQ+YL+ FP P++IAPA ++RTWEDE
Sbjct: 598 INELNSVGVKGSGGCIISHKAGTGKTRLTVVFLQSYLKRFPNSHPMVIAPATLMRTWEDE 657
Query: 63 FKKWNIGVPFHNLNTPELSGKEHIDATNEVDCSGSPHKNKDAVRMAKLYSWFKEKSILGI 122
+KWN+ +PF+N+N+ +LSG E +A + ++ G+ H N ++RM KL SW+K+KSILGI
Sbjct: 658 VRKWNVNIPFYNMNSLQLSGYEDAEAVSRLE--GNRHHN--SIRMVKLVSWWKQKSILGI 713
Query: 123 SYQLFEKLAGGNSXXXXXXXXXXXXHASMKENPEPETSVLGKVLLEVPGLLVLDEGHTPR 182
SY L+EKLA + V ++L+E+PGLLVLDEGHTPR
Sbjct: 714 SYPLYEKLAANKNTEG--------------------MQVFRRMLVELPGLLVLDEGHTPR 753
Query: 183 NQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPPELKKFCQSRL 242
NQ S IW VL+ ++T+KRI LSGT FQNNF EL N LCL +P+ D I SR+
Sbjct: 754 NQSSLIWKVLTEVRTEKRIFLSGTLFQNNFKELSNVLCLARPADKDTI--------SSRI 805
Query: 243 MQERKASQDFTWEQVSPGNITTGNPSDVKIQQLKLWMDPFVHVHKGSILQENLPGLRDCV 302
+ K SQ+ +V+ N +I LK + FVHVH+G+ILQE+LPGLRDCV
Sbjct: 806 HELSKCSQEGEHGRVNEEN---------RIVDLKAMIAHFVHVHEGTILQESLPGLRDCV 856
Query: 303 LILKPDXXXXXXXXXXXXXXXXXNFEHKLVLASVHPSLFLCCTLTEKEESVVD---RDRL 359
++L P FEHKL SVHPSL+LCC T+KE+ V+ L
Sbjct: 857 VVLNPPFQQKKILDRIDTSQNTFEFEHKLSAVSVHPSLYLCCNPTKKEDLVIGPATLGTL 916
Query: 360 EKLRSNPYVGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVL 419
++LR G KT+FL++F+R+ V EKVLV+SQ+ID L LIM+QL + DW EG+++L
Sbjct: 917 KRLRLKYEEGVKTKFLIDFIRISGTVKEKVLVYSQYIDTLKLIMEQLIAECDWTEGEQIL 976
Query: 420 CMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVER 479
M GK++Q+ +QHMI FN S +KVLLASTKACSEGI+LVGASRVV+LDVVWNPSVE
Sbjct: 977 LMHGKVEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGASRVVILDVVWNPSVES 1036
Query: 480 QAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEKDRISELVFSDRNAENDRSKSGAV 539
QAISRA+R+GQK+ V+ YHL+ +DT+E+ KYCKQ+EK RISELVFS N E D+ + V
Sbjct: 1037 QAISRAFRIGQKRAVFIYHLMVKDTSEWNKYCKQSEKHRISELVFSSTN-EKDKPINNEV 1095
Query: 540 NLEDNVXXXXXXXXXXXXXFGECVVQPKEKYLIESF 575
+D + F + + PK+ + SF
Sbjct: 1096 VSKDRILDEMVRHEKLKHIFEKILYHPKKSDMNTSF 1131
>AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 |
chr3:14755906-14760085 REVERSE LENGTH=1256
Length = 1256
Score = 284 bits (726), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 191/560 (34%), Positives = 290/560 (51%), Gaps = 52/560 (9%)
Query: 10 DPSS--AGGCIISHAPGTGKTRLTIVFLQTYLEVFPKCRPVIIAPAIILRTWEDEFKKWN 67
DPSS GGC++SH PG GKT L I FL +YL++FP RP+++AP L TW EF KW
Sbjct: 699 DPSSDKIGGCVVSHTPGAGKTFLIIAFLASYLKIFPGKRPLVLAPKTTLYTWYKEFIKWE 758
Query: 68 IGVPFHNLNTPELSGKEHIDATNE--VDCSGSPHKNKDAVR----MAKLYSWFKEKSILG 121
I VP H L+ G+ + E + G P ++D + + K+ W + S+L
Sbjct: 759 IPVPVHLLH-----GRRTYCMSKEKTIQFEGIPKPSQDVMHVLDCLDKIQKWHAQPSVLV 813
Query: 122 ISYQLFEKLAGGNSXXXXXXXXXXXXHASMKENPE-PETSVLGKVLLEVPGLLVLDEGHT 180
+ Y F L M+E+ + + KVL E PGLLVLDEGH
Sbjct: 814 MGYTSFLTL--------------------MREDSKFAHRKYMAKVLRESPGLLVLDEGHN 853
Query: 181 PRNQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPPEL-KKFCQ 239
PR+ +S + L ++ T RI+LSGT FQNNF E +NTLCL +P F + EL KKF
Sbjct: 854 PRSTKSRLRKALMKVDTDLRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLVELDKKFQT 913
Query: 240 SRLMQ------ERKASQDFTWEQVSPGNITTGNPSDVKIQQLKLWMDPFVHVHKGSILQE 293
++ Q E +A + F + G+ + L+ F+ ++GS
Sbjct: 914 NQAEQKAPHLLENRARKFFLDIIAKKIDTKVGDERLQGLNMLRNMTSGFIDNYEGSGSGS 973
Query: 294 N--LPGLRDCVLILKPDXXXXXXXXXXXXXXXXXN-----FEHKLVLASVHPSLFLCCTL 346
LPGL+ L++ + E + LA++HP L T
Sbjct: 974 GDVLPGLQIYTLLMNSTDVQHKSLTKLQNIMSTYHGYPLELELLITLAAIHPWLVKTTTC 1033
Query: 347 TEKEESVVDRDRLEKLRSNPYVGAKTRFLVEFV-RLCEAVNEKVLVFSQFIDPLNLIMDQ 405
K + + +EKL+ + G+K F++ V R+ + EK+L+F I P+ L ++
Sbjct: 1034 CAKFFNPQELLEIEKLKHDAKKGSKVMFVLNLVFRVVK--REKILIFCHNIAPIRLFLEL 1091
Query: 406 LKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASR 465
++ F W G+E+L + G L+ ++ +I F + +++VLLAS AC+EGI+L ASR
Sbjct: 1092 FENVFRWKRGRELLTLTGDLELFERGRVIDKFEEPGGQSRVLLASITACAEGISLTAASR 1151
Query: 466 VVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEKDRISELVFS 525
V++LD WNPS +QAI+RA+R GQ+KVVY Y L+++ T E KY + K+ +S ++FS
Sbjct: 1152 VIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFS 1211
Query: 526 DRNAENDRSKSGAVNLEDNV 545
+ E D S+ A +ED+V
Sbjct: 1212 EEFVE-DPSQWQAEKIEDDV 1230
>AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 |
chr5:6899015-6903266 REVERSE LENGTH=1261
Length = 1261
Score = 272 bits (696), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 186/561 (33%), Positives = 292/561 (52%), Gaps = 53/561 (9%)
Query: 10 DPSSA--GGCIISHAPGTGKTRLTIVFLQTYLEVFPKCRPVIIAPAIILRTWEDEFKKWN 67
DP+S GGC+ISH+PG GKT L I FL +YL++FP RP+++AP L TW EF KW
Sbjct: 704 DPTSGNIGGCVISHSPGAGKTFLIIAFLTSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWE 763
Query: 68 IGVPFHNLNTPELSGKEHIDATNEVDCSGSPHKNKDAVR----MAKLYSWFKEKSILGIS 123
I VP H ++ + T V +G P ++D + + K+ W S+L +
Sbjct: 764 IPVPVHLIHGRRTYCTFKQNKT--VQFNGVPKPSRDVMHVLDCLEKIQKWHAHPSVLVMG 821
Query: 124 YQLFEKLAGGNSXXXXXXXXXXXXHASMKENPE-PETSVLGKVLLEVPGLLVLDEGHTPR 182
Y F L M+E+ + + KVL E PGLLVLDEGH PR
Sbjct: 822 YTSFTTL--------------------MREDSKFAHRKYMAKVLRESPGLLVLDEGHNPR 861
Query: 183 NQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPPEL-KKF---- 237
+ +S + L ++ T RI+LSGT FQNNF E +NTLCL +P F + EL +KF
Sbjct: 862 STKSRLRKALMKVGTDLRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLMELDQKFKTNH 921
Query: 238 --CQSRLMQERKASQDFTWEQVSPGNITTGNPSDVKIQQLKLWMDPFVHVHKGSILQ--E 293
++ + E +A + F + + G+ + LK + F+ ++GS +
Sbjct: 922 GVNKAPHLLENRARKLFLDIIAKKIDASVGDERLQGLNMLKNMTNGFIDNYEGSGSGSGD 981
Query: 294 NLPGLRDCVLILKP-DXXXXXXXXXXXXXXXXXNF----EHKLVLASVHPSLFL---CCT 345
LPGL+ L++ D + E ++ LA++HP L CCT
Sbjct: 982 ALPGLQIYTLVMNSTDIQHKILTKLQDVIKTYFGYPLEVELQITLAAIHPWLVTSSNCCT 1041
Query: 346 LTEKEESVVDRDRLEKLRSNPYVGAKTRFLVEFV-RLCEAVNEKVLVFSQFIDPLNLIMD 404
+ + + + KL+ + G+K F++ + R+ + EK+L+F I P+ + +
Sbjct: 1042 KFFNPQELSE---IGKLKHDAKKGSKVMFVLNLIFRVVK--REKILIFCHNIAPIRMFTE 1096
Query: 405 QLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGAS 464
++ F W G+E+L + G L+ ++ +I F + + ++VLLAS AC+EGI+L AS
Sbjct: 1097 LFENIFRWQRGREILTLTGDLELFERGRVIDKFEEPGNPSRVLLASITACAEGISLTAAS 1156
Query: 465 RVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEKDRISELVF 524
RV++LD WNPS +QAI+RA+R GQ+KVVY Y L+++ T E KY + K+ +S ++F
Sbjct: 1157 RVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSCMIF 1216
Query: 525 SDRNAENDRSKSGAVNLEDNV 545
S+ D S A +ED++
Sbjct: 1217 SEEFVA-DPSLWQAEKIEDDI 1236
>AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:7097638-7101182 FORWARD LENGTH=888
Length = 888
Score = 247 bits (630), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 167/537 (31%), Positives = 273/537 (50%), Gaps = 70/537 (13%)
Query: 5 NLKTADPSSAGGCIISHAPGTGKTRLTIVFLQTYLEVFPKCRPVIIAPAIILRTWEDEFK 64
NL DP GGCI++HAPG+GKT + I F+Q++L +P+ +P+++ P IL TW+ EF
Sbjct: 364 NLVADDP---GGCIMAHAPGSGKTFMIISFMQSFLAKYPQAKPLVVLPKGILPTWKKEFV 420
Query: 65 KWNI-GVPFHNLNTPELSGKEHIDATNEVDCSGSPHKNKDAVRMAKLYSWFKEKSILGIS 123
+W + +P +D + +N+ A +++ L W ++KSIL +
Sbjct: 421 RWQVEDIPL-------------------LDFYSAKAENR-AQQLSILKQWMEKKSILFLG 460
Query: 124 YQLFEKLAGGNSXXXXXXXXXXXXHASMKENPEPETSVLGKVLLEVPGLLVLDEGHTPRN 183
YQ F + ++ ++ ++LL+VP +L+LDEGHTPRN
Sbjct: 461 YQQFSTIVCDDTT---------------------DSLSCQEILLKVPSILILDEGHTPRN 499
Query: 184 QRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFP--DMIPPELKKF---- 237
+ +++ L+++QT ++++LSGT +QN+ E++N L LV+P F D +K+
Sbjct: 500 EDTNLLQSLAQVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLDTSKSAVKRILAYT 559
Query: 238 -CQSR-LMQERKASQDFTWEQVSPGNITTGNPSDVKI---QQLKLWMDPFVHVHKGSILQ 292
C R + + + + + VKI Q L+ +H +KG L
Sbjct: 560 PCDVRGRLTGSNSDMASMFNETVEHTLQKSEDFTVKIKVIQDLREMTKKVLHYYKGDFLD 619
Query: 293 ENLPGLRDCVLILKPDXXXXXXXXXXXXXXXXXNFEHKLVLASV--HPSLFLCCTLTEKE 350
E LPGL D ++L + F+ V +++ HP L + ++K
Sbjct: 620 E-LPGLADFTVVL--NLSPKQLNEVKKLRREKRKFKVSAVGSAIYLHPKLKV---FSDKS 673
Query: 351 ESVVDR---DRLEKLRSNPYVGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQLK 407
+ V D + +EKL N G K +F + + LC++ EK+LVFSQ++ PL +
Sbjct: 674 DDVSDTTMDEMVEKLDLNE--GVKAKFFLNLINLCDSAGEKLLVFSQYLIPLKFLERLAA 731
Query: 408 SNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRVV 467
W G+EV + G ++++ + FN AK+ S KAC EGI+LVGASR++
Sbjct: 732 LAKGWKLGKEVFVLTGNTSSEQREWSMETFNSSPD-AKIFFGSIKACGEGISLVGASRIL 790
Query: 468 LLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEKDRISELVF 524
+LDV NPSV RQAI RA+R GQKK+V+ Y LI + E + +K+ IS++ F
Sbjct: 791 ILDVPLNPSVTRQAIGRAFRPGQKKMVHAYRLIAGSSPEEEDHNTCFKKEVISKMWF 847
>AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 |
chr2:9179622-9182356 REVERSE LENGTH=816
Length = 816
Score = 241 bits (615), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 165/544 (30%), Positives = 271/544 (49%), Gaps = 71/544 (13%)
Query: 4 HNLKTADPSSAGGCIISHAPGTGKTRLTIVFLQTYLEVFPKCRPVIIAPAIILRTWEDEF 63
+NL +P GGCI++HAPG+GKT L I FLQ+++ + P+ RP+++ P I+ +W+ EF
Sbjct: 278 NNLAADEP---GGCILAHAPGSGKTFLLISFLQSFMAMDPQARPLVVLPKGIIESWKREF 334
Query: 64 KKWNI-GVPFHNLNTPELSGKEHIDATNEVDCSGSPHKNKDAVRMAKLYSWFKEKSILGI 122
W + +P + + + ++ ++ L W KE+SIL +
Sbjct: 335 TLWEVEKIPLLDFYSVKAESRKQ--------------------QLKVLGQWIKERSILFL 374
Query: 123 SYQLFEKLAGGNSXXXXXXXXXXXXHASMKENPEPETSVLGKVLLEVPGLLVLDEGHTPR 182
YQ F ++ +N E + +LLE P LL+LDEGHT R
Sbjct: 375 GYQQFTRII-------------------CDDNFEAASEDCKLILLEKPTLLILDEGHTSR 415
Query: 183 NQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPPELKKFCQSRL 242
N+ + + + L+R++T+++++L+GT FQNN E++N L LV+P F + P ++ SR+
Sbjct: 416 NKETYMLSSLARVKTRRKVVLTGTLFQNNVEEVFNILDLVRPKF--LKRPGTREIV-SRI 472
Query: 243 MQE------RKASQD--------FTWEQVSPGNITTGNPSDVKIQQLKLWMDPFVHVHKG 288
M + ++ +Q F +++ T + I+ L+ +H HK
Sbjct: 473 MSKAEIPRGKQVNQSSSSIEGTFFAAVELTLQRSTNFSAKASLIKDLREMTRNILHYHKA 532
Query: 289 SILQENLPGLRDCVLILKPDXXXXXXXXXXXXXXXXXNFEHKLVLASVHPSL--FLCCTL 346
LPGL + ++L L +HP L FL
Sbjct: 533 D-FSGLLPGLSEFTVMLNLSSIQRDEVKGLRKMELFKQISLGAALY-IHPKLKSFLEENP 590
Query: 347 TEKEESVVDRD----RLEKL--RSNPYVGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLN 400
+ E+ D + +L+K+ + N G K +F + + LCE+ EK+LVFSQ+I P+
Sbjct: 591 SNGEKGFSDNNTTVMKLDKMLKKINVRDGVKMKFFLNLLALCESTGEKLLVFSQYIVPIK 650
Query: 401 LIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINL 460
+ + S W G+E+ + G ++++ + FN+ AKV S KAC EGI+L
Sbjct: 651 TLERLMSSMKGWRLGKEMFTITGDSSNEQREWSMERFNN-SLEAKVFFGSIKACGEGISL 709
Query: 461 VGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEKDRIS 520
VGASRV++LDV NPSV +QA++RAYR GQK+ VY Y L+ D+ E Y K+ +S
Sbjct: 710 VGASRVLILDVHLNPSVTQQAVARAYRPGQKRKVYAYKLVAADSPEEENYETCTRKEMMS 769
Query: 521 ELVF 524
++ F
Sbjct: 770 KMWF 773
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/360 (27%), Positives = 154/360 (42%), Gaps = 29/360 (8%)
Query: 163 GKVLLEVP-GLLVLDEGHTPRNQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCL 221
G+ LL + G VLDEGH RN S I V ++QT RII++G P QN EL++
Sbjct: 531 GEKLLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDF 590
Query: 222 VKPSFPDMIPPELKKFCQSRLMQERKASQDFTWEQVSPGNITTGNPSDVKIQQLKL---- 277
V P ++P +F + + SP ++T V ++ L +
Sbjct: 591 VFPGKLGVLPVFEAEFSVPITVG--------GYANASPLQVSTAYRCAVVLRDLIMPYLL 642
Query: 278 -WMDPFVHVHKGSILQENLPGLRDCVLILKPDXXXXXXXXXXXXXXXXXNFEHKLVLASV 336
M V+ H L + + C L ++ + L V
Sbjct: 643 RRMKADVNAH----LTKKTEHVLFCSLTVEQRSTYRAFLASSEVEQIFDGNRNSLYGIDV 698
Query: 337 HPSLFLCCTLTEKEESVVDRDRLEKLRSNPYVGAKTRFLVEFVRLCEAVNEKVLVFSQFI 396
+ L E+E S + D NP K + + E +++ + +VL+FSQ
Sbjct: 699 MRKICNHPDLLEREHSHQNPDY-----GNPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQ 753
Query: 397 DPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSE 456
L+++ L +N M G K++ +I FN+ + V + +TK
Sbjct: 754 QMLDILESFLVAN-----EYSYRRMDGLTPVKQRMALIDEFNNSEDMF-VFVLTTKVGGL 807
Query: 457 GINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEK 516
G NL GA+RV++ D WNPS + QA RA+R+GQKK V Y LIT+ T E Y +Q K
Sbjct: 808 GTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYK 867
>AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 12/192 (6%)
Query: 362 LRSNPY----VGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQL-------KSNF 410
L+ N Y K L++ + + V +K LVFSQ I L+LI L K
Sbjct: 1103 LQKNNYKVSDFSGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGK 1162
Query: 411 DWIEGQEVLCMCGKLDQKKKQHMIHGFND-EKSRAKVLLASTKACSEGINLVGASRVVLL 469
W +G++ + GK + ++Q ++ FN+ + R K L ST+A S GINL A+RV+++
Sbjct: 1163 FWKKGKDWYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIV 1222
Query: 470 DVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEKDRISELVFSDRNA 529
D WNP+ + QAI RA+R GQKK V+ Y L+ + T E Y +Q K+ ++ V +
Sbjct: 1223 DGSWNPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQV 1282
Query: 530 ENDRSKSGAVNL 541
SK ++L
Sbjct: 1283 HRTISKEEMLHL 1294
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 86/230 (37%), Gaps = 50/230 (21%)
Query: 16 GCIISHAPGTGKTRLTIVFLQTYLEVFPKC------RPVIIAPAIILRTWEDEFKKWNIG 69
GCI++H G GKT I FL T + +C +I+ P +L W EF+KW
Sbjct: 749 GCILAHTMGLGKTFQVIAFLYTAM----RCVDLGLKTALIVTPVNVLHNWRSEFEKWMPS 804
Query: 70 --VPFHNLNTPELSGKEHIDATNEVDCSGSPHKNKDAVRMAKLYSWFKEKSILGISYQLF 127
P ++S + D L W K+ + + Y F
Sbjct: 805 EVKPLRIFMLGDVSRERRFDL---------------------LTKWRKKGGVFLMGYTNF 843
Query: 128 EKLAGGNSXXXXXXXXXXXXHASMKENPEPETSVLGKVLLEVPGLLVLDEGHTPRNQRSS 187
L+ G + L + P +LV DE H +N ++
Sbjct: 844 RNLSLGRGVKDLNAARG-----------------ICNALRDGPDILVCDEAHIIKNTKAD 886
Query: 188 IWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPPELKKF 237
L +++ Q+RI L+G+P QNN +E Y + V+ F P +F
Sbjct: 887 TTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRF 936
>AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 12/192 (6%)
Query: 362 LRSNPY----VGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQL-------KSNF 410
L+ N Y K L++ + + V +K LVFSQ I L+LI L K
Sbjct: 1103 LQKNNYKVSDFSGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGK 1162
Query: 411 DWIEGQEVLCMCGKLDQKKKQHMIHGFND-EKSRAKVLLASTKACSEGINLVGASRVVLL 469
W +G++ + GK + ++Q ++ FN+ + R K L ST+A S GINL A+RV+++
Sbjct: 1163 FWKKGKDWYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIV 1222
Query: 470 DVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEKDRISELVFSDRNA 529
D WNP+ + QAI RA+R GQKK V+ Y L+ + T E Y +Q K+ ++ V +
Sbjct: 1223 DGSWNPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQV 1282
Query: 530 ENDRSKSGAVNL 541
SK ++L
Sbjct: 1283 HRTISKEEMLHL 1294
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 86/230 (37%), Gaps = 50/230 (21%)
Query: 16 GCIISHAPGTGKTRLTIVFLQTYLEVFPKC------RPVIIAPAIILRTWEDEFKKWNIG 69
GCI++H G GKT I FL T + +C +I+ P +L W EF+KW
Sbjct: 749 GCILAHTMGLGKTFQVIAFLYTAM----RCVDLGLKTALIVTPVNVLHNWRSEFEKWMPS 804
Query: 70 --VPFHNLNTPELSGKEHIDATNEVDCSGSPHKNKDAVRMAKLYSWFKEKSILGISYQLF 127
P ++S + D L W K+ + + Y F
Sbjct: 805 EVKPLRIFMLGDVSRERRFDL---------------------LTKWRKKGGVFLMGYTNF 843
Query: 128 EKLAGGNSXXXXXXXXXXXXHASMKENPEPETSVLGKVLLEVPGLLVLDEGHTPRNQRSS 187
L+ G + L + P +LV DE H +N ++
Sbjct: 844 RNLSLGRGVKDLNAARG-----------------ICNALRDGPDILVCDEAHIIKNTKAD 886
Query: 188 IWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPPELKKF 237
L +++ Q+RI L+G+P QNN +E Y + V+ F P +F
Sbjct: 887 TTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRF 936
>AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 12/192 (6%)
Query: 362 LRSNPY----VGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQL-------KSNF 410
L+ N Y K L++ + + V +K LVFSQ I L+LI L K
Sbjct: 1103 LQKNNYKVSDFSGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGK 1162
Query: 411 DWIEGQEVLCMCGKLDQKKKQHMIHGFND-EKSRAKVLLASTKACSEGINLVGASRVVLL 469
W +G++ + GK + ++Q ++ FN+ + R K L ST+A S GINL A+RV+++
Sbjct: 1163 FWKKGKDWYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIV 1222
Query: 470 DVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEKDRISELVFSDRNA 529
D WNP+ + QAI RA+R GQKK V+ Y L+ + T E Y +Q K+ ++ V +
Sbjct: 1223 DGSWNPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQV 1282
Query: 530 ENDRSKSGAVNL 541
SK ++L
Sbjct: 1283 HRTISKEEMLHL 1294
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 86/230 (37%), Gaps = 50/230 (21%)
Query: 16 GCIISHAPGTGKTRLTIVFLQTYLEVFPKC------RPVIIAPAIILRTWEDEFKKWNIG 69
GCI++H G GKT I FL T + +C +I+ P +L W EF+KW
Sbjct: 749 GCILAHTMGLGKTFQVIAFLYTAM----RCVDLGLKTALIVTPVNVLHNWRSEFEKWMPS 804
Query: 70 --VPFHNLNTPELSGKEHIDATNEVDCSGSPHKNKDAVRMAKLYSWFKEKSILGISYQLF 127
P ++S + D L W K+ + + Y F
Sbjct: 805 EVKPLRIFMLGDVSRERRFDL---------------------LTKWRKKGGVFLMGYTNF 843
Query: 128 EKLAGGNSXXXXXXXXXXXXHASMKENPEPETSVLGKVLLEVPGLLVLDEGHTPRNQRSS 187
L+ G + L + P +LV DE H +N ++
Sbjct: 844 RNLSLGRGVKDLNAARG-----------------ICNALRDGPDILVCDEAHIIKNTKAD 886
Query: 188 IWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPPELKKF 237
L +++ Q+RI L+G+P QNN +E Y + V+ F P +F
Sbjct: 887 TTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRF 936
>AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1458
Length = 1458
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 12/192 (6%)
Query: 362 LRSNPY----VGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQL-------KSNF 410
L+ N Y K L++ + + V +K LVFSQ I L+LI L K
Sbjct: 1082 LQKNNYKVSDFSGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGK 1141
Query: 411 DWIEGQEVLCMCGKLDQKKKQHMIHGFND-EKSRAKVLLASTKACSEGINLVGASRVVLL 469
W +G++ + GK + ++Q ++ FN+ + R K L ST+A S GINL A+RV+++
Sbjct: 1142 FWKKGKDWYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIV 1201
Query: 470 DVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEKDRISELVFSDRNA 529
D WNP+ + QAI RA+R GQKK V+ Y L+ + T E Y +Q K+ ++ V +
Sbjct: 1202 DGSWNPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQV 1261
Query: 530 ENDRSKSGAVNL 541
SK ++L
Sbjct: 1262 HRTISKEEMLHL 1273
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 165 VLLEVPGLLVLDEGHTPRNQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKP 224
L + P +LV DE H +N ++ L +++ Q+RI L+G+P QNN +E Y + V+
Sbjct: 843 ALRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 902
Query: 225 SFPDMIPPELKKF 237
F P +F
Sbjct: 903 GFLGSSPEFRNRF 915
>AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domain |
chr5:17489327-17494830 FORWARD LENGTH=1277
Length = 1277
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 80/147 (54%), Gaps = 6/147 (4%)
Query: 387 EKVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKV 446
EK +VFSQ+ L+L+ L+ G E L GKL QK ++ ++ FN+ K + +
Sbjct: 1128 EKSIVFSQWTSFLDLLEIPLRRR-----GFEFLRFDGKLAQKGREKVLKEFNETKQKT-I 1181
Query: 447 LLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAE 506
LL S KA G+NL AS V L+D WNP+VE QAI R +R+GQK+ V+ I +DT E
Sbjct: 1182 LLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVE 1241
Query: 507 YAKYCKQAEKDRISELVFSDRNAENDR 533
QA K R+ +D + R
Sbjct: 1242 ERMQQVQARKQRMIAGALTDEEVRSAR 1268
>AT5G05130.1 | Symbols: | DNA/RNA helicase protein |
chr5:1512173-1514918 FORWARD LENGTH=862
Length = 862
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 88/164 (53%), Gaps = 10/164 (6%)
Query: 383 EAVNEKVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGF-NDEK 441
E N K +VFSQF L L+ LK+ G +L + G + KK+ +I F N E
Sbjct: 703 ENPNTKSVVFSQFRKMLLLLETPLKA-----AGFTILRLDGAMTVKKRTQVIGEFGNPEL 757
Query: 442 SRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLIT 501
+ VLLAS KA GINL ASRV L D WNP+VE QA+ R +R+GQK+ V +I
Sbjct: 758 TGPVVLLASLKASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIA 817
Query: 502 QDTAEYAKYCKQAEKDRISELVFSDRNAENDRSKSGAVNLEDNV 545
+++ E Q +K ++ F R +++R VN+ED V
Sbjct: 818 RNSIEERVLELQQKKKNLANEAFKRRQKKDERE----VNVEDVV 857
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 160/376 (42%), Gaps = 48/376 (12%)
Query: 174 VLDEGHTPRNQRSSIWNVL-SRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPP 232
++DE +N S ++NVL + +R++++GTP QNN EL+ + P +
Sbjct: 181 IIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQ 240
Query: 233 ELKKFCQS----RLMQERKASQD-------FTWEQVSPGNITTGNPSDVKIQQLKLWMDP 281
L F ++ + +++ + F + I +GN + +L + M P
Sbjct: 241 FLSAFKETGDGLDVSNDKETYKSLKFILGAFMLRRTKSLLIESGNLVLPPLTELTV-MVP 299
Query: 282 FVHVHK---GSILQENLPGLRDCVLILKPDXXXXXXXXXXXXXXXXXNFEHKLVLASVHP 338
V + K SIL++ LPGL + N +L A HP
Sbjct: 300 LVSLQKKIYTSILRKELPGLLEL-------------SSGGSNHTSLQNIVIQLRKACSHP 346
Query: 339 SLFLCCTLTEKEESVVDRDRLEKLRSNPYVGAKTRFLV--EFVRLCEAVNEKVLVFSQFI 396
LF EE E L V A + LV + ++ +VL+FSQ
Sbjct: 347 YLFPGIEPEPFEEG-------EHL-----VQASGKLLVLDQLLKRLHDSGHRVLLFSQMT 394
Query: 397 DPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSE 456
L+++ D F + + G + +++ I F+ + S A V + ST+A
Sbjct: 395 STLDILQD-----FMELRRYSYERLDGSVRAEERFAAIKNFSVDGSNAFVFMISTRAGGV 449
Query: 457 GINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEK 516
G+NLV A V+ + WNP V++QA+ RA+R+GQ V + +L+T+ + E + K
Sbjct: 450 GLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERK 509
Query: 517 DRISELVFSDRNAEND 532
++S V D E +
Sbjct: 510 LQLSHNVVGDNMEEKE 525
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 149/350 (42%), Gaps = 39/350 (11%)
Query: 173 LVLDEGHTPRNQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPP 232
+++DE H +N+ S + + T R++++GTP QNN EL+ L + P
Sbjct: 319 IIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEV------ 372
Query: 233 ELKKFCQSRLMQERKASQDFTWEQVSPGNITTGNPSDVKIQQLKLWMDPFVHVHKGSILQ 292
F + E W Q+S N + +V +QQL + PF+ S ++
Sbjct: 373 ----FSSAETFDE--------WFQISGEN----DQQEV-VQQLHKVLRPFLLRRLKSDVE 415
Query: 293 ENLPGLRDCVL---ILKPDXXXXXXXXXXXXXXXXXNFEHKLVLASVHPSLFLCCT---L 346
+ LP ++ +L + + E K +L ++ L CC L
Sbjct: 416 KGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGGERKRLL-NIAMQLRKCCNHPYL 474
Query: 347 TEKEESVVDRDRLEKLRSNPYVGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQL 406
+ E + L +N K L + + + + +VL+FSQ L+++ D L
Sbjct: 475 FQGAEPGPPYTTGDHLVTN---AGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYL 531
Query: 407 KSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRV 466
G + + G ++ I +N S V L ST+A GINL A V
Sbjct: 532 -----MYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVV 586
Query: 467 VLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEK 516
+L D WNP V+ QA RA+R+GQKK V + T++ E AK ++A K
Sbjct: 587 ILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIE-AKVIERAYK 635
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 149/350 (42%), Gaps = 39/350 (11%)
Query: 173 LVLDEGHTPRNQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPP 232
+++DE H +N+ S + + T R++++GTP QNN EL+ L + P
Sbjct: 319 IIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEV------ 372
Query: 233 ELKKFCQSRLMQERKASQDFTWEQVSPGNITTGNPSDVKIQQLKLWMDPFVHVHKGSILQ 292
F + E W Q+S N + +V +QQL + PF+ S ++
Sbjct: 373 ----FSSAETFDE--------WFQISGEN----DQQEV-VQQLHKVLRPFLLRRLKSDVE 415
Query: 293 ENLPGLRDCVL---ILKPDXXXXXXXXXXXXXXXXXNFEHKLVLASVHPSLFLCCT---L 346
+ LP ++ +L + + E K +L ++ L CC L
Sbjct: 416 KGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGGERKRLL-NIAMQLRKCCNHPYL 474
Query: 347 TEKEESVVDRDRLEKLRSNPYVGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQL 406
+ E + L +N K L + + + + +VL+FSQ L+++ D L
Sbjct: 475 FQGAEPGPPYTTGDHLVTN---AGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYL 531
Query: 407 KSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRV 466
G + + G ++ I +N S V L ST+A GINL A V
Sbjct: 532 -----MYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVV 586
Query: 467 VLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEK 516
+L D WNP V+ QA RA+R+GQKK V + T++ E AK ++A K
Sbjct: 587 ILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIE-AKVIERAYK 635
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 384 AVNEKVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCG--KLDQKKKQHMIHGFNDEK 441
A N KVL+FSQ+ L+ IMD S +G EV + G KLD++++Q I F+DEK
Sbjct: 538 ANNHKVLIFSQWTKLLD-IMDYYFSE----KGFEVCRIDGSVKLDERRRQ--IKDFSDEK 590
Query: 442 SRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLIT 501
S + L ST+A GINL A +L D WNP ++ QA+ R +R+GQ K V+ Y L T
Sbjct: 591 SSCSIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLST 650
Query: 502 QDTAEYAKYCKQAEKDRISELVFSDRNAENDRSKSGAVNLEDNV 545
+ E + K ++ +V +R+KS E+++
Sbjct: 651 AQSIETRVLKRAYSKLKLEHVVIGQGQFHQERAKSSTPLEEEDI 694
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 85/184 (46%), Gaps = 15/184 (8%)
Query: 342 LCCTLTEKEESVVDR---------DRLEKLRSNPYVGAKTRFLVEFVRLCEAVNEKVLVF 392
+ TLT++E V +R D + N + K F++ + +VL+F
Sbjct: 695 MDSTLTQEEAGVAERLAMHIADNVDTDDFQTKNDSISCKLSFIMSLLENLIPEGHRVLIF 754
Query: 393 SQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTK 452
SQ LNLI D L SN G L + G + + F E A + L +++
Sbjct: 755 SQTRKMLNLIQDSLTSN-----GYSFLRIDGTTKAPDRLKTVEEFQ-EGHVAPIFLLTSQ 808
Query: 453 ACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCK 512
G+ L A RV+++D WNPS + Q++ RAYR+GQ K V Y L+T T E Y K
Sbjct: 809 VGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIYRK 868
Query: 513 QAEK 516
Q K
Sbjct: 869 QVYK 872
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 141/340 (41%), Gaps = 38/340 (11%)
Query: 173 LVLDEGHTPRNQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPP 232
+++DE H +N+ S + + T R++++GTP QNN EL+ L + P
Sbjct: 314 IIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEI------ 367
Query: 233 ELKKFCQSRLMQERKASQDFTWEQVSPGNITTGNPSDVKIQQLKLWMDPFVHVHKGSILQ 292
F + E W Q+S N + +V +QQL + PF+ S ++
Sbjct: 368 ----FSSAETFDE--------WFQISGEN----DQQEV-VQQLHKVLRPFLLRRLKSDVE 410
Query: 293 ENLPGLRDCVL---ILKPDXXXXXXXXXXXXXXXXXNFEHKLVLASVHPSLFLCCT---L 346
+ LP ++ +L + + E K +L ++ L CC L
Sbjct: 411 KGLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGGERKRLL-NIAMQLRKCCNHPYL 469
Query: 347 TEKEESVVDRDRLEKLRSNPYVGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQL 406
+ E + L +N K L + + + + +VL+FSQ L+++ D L
Sbjct: 470 FQGAEPGPPYTTGDHLITN---AGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYL 526
Query: 407 KSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRV 466
G + G ++ I +N S V L ST+A GINL A V
Sbjct: 527 -----MYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVV 581
Query: 467 VLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAE 506
+L D WNP V+ QA RA+R+GQKK V + T+ E
Sbjct: 582 ILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIE 621
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 141/340 (41%), Gaps = 38/340 (11%)
Query: 173 LVLDEGHTPRNQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPP 232
+++DE H +N+ S + + T R++++GTP QNN EL+ L + P
Sbjct: 314 IIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEI------ 367
Query: 233 ELKKFCQSRLMQERKASQDFTWEQVSPGNITTGNPSDVKIQQLKLWMDPFVHVHKGSILQ 292
F + E W Q+S N + +V +QQL + PF+ S ++
Sbjct: 368 ----FSSAETFDE--------WFQISGEN----DQQEV-VQQLHKVLRPFLLRRLKSDVE 410
Query: 293 ENLPGLRDCVL---ILKPDXXXXXXXXXXXXXXXXXNFEHKLVLASVHPSLFLCCT---L 346
+ LP ++ +L + + E K +L ++ L CC L
Sbjct: 411 KGLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGGERKRLL-NIAMQLRKCCNHPYL 469
Query: 347 TEKEESVVDRDRLEKLRSNPYVGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQL 406
+ E + L +N K L + + + + +VL+FSQ L+++ D L
Sbjct: 470 FQGAEPGPPYTTGDHLITN---AGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYL 526
Query: 407 KSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRV 466
G + G ++ I +N S V L ST+A GINL A V
Sbjct: 527 -----MYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVV 581
Query: 467 VLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAE 506
+L D WNP V+ QA RA+R+GQKK V + T+ E
Sbjct: 582 ILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIE 621
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 141/340 (41%), Gaps = 38/340 (11%)
Query: 173 LVLDEGHTPRNQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPP 232
+++DE H +N+ S + + T R++++GTP QNN EL+ L + P
Sbjct: 314 IIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEI------ 367
Query: 233 ELKKFCQSRLMQERKASQDFTWEQVSPGNITTGNPSDVKIQQLKLWMDPFVHVHKGSILQ 292
F + E W Q+S N + +V +QQL + PF+ S ++
Sbjct: 368 ----FSSAETFDE--------WFQISGEN----DQQEV-VQQLHKVLRPFLLRRLKSDVE 410
Query: 293 ENLPGLRDCVL---ILKPDXXXXXXXXXXXXXXXXXNFEHKLVLASVHPSLFLCCT---L 346
+ LP ++ +L + + E K +L ++ L CC L
Sbjct: 411 KGLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGGERKRLL-NIAMQLRKCCNHPYL 469
Query: 347 TEKEESVVDRDRLEKLRSNPYVGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQL 406
+ E + L +N K L + + + + +VL+FSQ L+++ D L
Sbjct: 470 FQGAEPGPPYTTGDHLITN---AGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYL 526
Query: 407 KSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRV 466
G + G ++ I +N S V L ST+A GINL A V
Sbjct: 527 -----MYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVV 581
Query: 467 VLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAE 506
+L D WNP V+ QA RA+R+GQKK V + T+ E
Sbjct: 582 ILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIE 621
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 148/379 (39%), Gaps = 62/379 (16%)
Query: 173 LVLDEGHTPRNQRSSIWNVLSRIQTQKRIILSGTPFQNN--------------------- 211
L++DE H +N + ++ L T+ +++++GTP QN+
Sbjct: 757 LMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDE 816
Query: 212 FVELYNTLCLVKPSFPDMIPPELKKFCQSRLMQERKASQDFTWEQVSPGNITTGNPSDVK 271
FVE Y L S + EL+ R++++ + S E++
Sbjct: 817 FVENYKNLSSFNESELANLHLELRPHILRRVIKDVEKSLPPKIERI-------------- 862
Query: 272 IQQLKLWMDPFVHVHKGSILQENLPGLRDCVLILKPDXXXXXXXXXXXXXXXXXNFEHKL 331
L++ M P + IL+ N L V N +L
Sbjct: 863 ---LRVEMSPLQKQYYKWILERNFHDLNKGV---------------RGNQVSLLNIVVEL 904
Query: 332 VLASVHPSLFLCCTLTEKEESVVDRDRLEKLRSNPYVGAKTRFLVEFVRLCEAVNEKVLV 391
HP LF + + D +L+K+ K L + + +VL+
Sbjct: 905 KKCCNHPFLFESADHGYGGD-INDNSKLDKI---ILSSGKLVILDKLLVRLRETKHRVLI 960
Query: 392 FSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLAST 451
FSQ + L+++ + L + G + + G + +Q + FN S L ST
Sbjct: 961 FSQMVRMLDILAEYLS-----LRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLST 1015
Query: 452 KACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYC 511
+A GINL A VV+ D WNP + QA+SRA+R+GQ++VV Y +T + E
Sbjct: 1016 RAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEILE 1075
Query: 512 KQAEKDRISELVFSDRNAE 530
+ K + LV NAE
Sbjct: 1076 RAKRKMVLDHLVIQKLNAE 1094
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 162/388 (41%), Gaps = 59/388 (15%)
Query: 174 VLDEGHTPRNQRSSIWNVL-SRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIPP 232
++DE +N S ++NVL + +R++++GTP QNN EL+ + P +
Sbjct: 187 IIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQ 246
Query: 233 ELKKFCQS-RLMQERKASQD-------------FTWEQVSPGNITTGNPSDVKIQQLKLW 278
L F ++ + S D F + I +GN + +L +
Sbjct: 247 FLSAFKETGDGLSGLDVSNDKETYKSLKFILGAFMLRRTKSLLIESGNLVLPPLTELTV- 305
Query: 279 MDPFVHVHK---GSILQENLPGLRDCVLILKPDXXXXXXXXXXXXXXXXXNFEHKLVLAS 335
M P V + K SIL++ LPGL + N +L A
Sbjct: 306 MVPLVSLQKKIYTSILRKELPGLLEL-------------SSGGSNHTSLQNIVIQLRKAC 352
Query: 336 VHPSLFLCCTLTEKEESVVDRDRLEKLRSNPYVGAKTRFLV--EFVRLCEAVNEKVLVFS 393
HP LF EE E L V A + LV + ++ +VL+FS
Sbjct: 353 SHPYLFPGIEPEPFEEG-------EHL-----VQASGKLLVLDQLLKRLHDSGHRVLLFS 400
Query: 394 QFIDPLNLIMDQL---KSNFDWIEG----QEVLCMCGKLDQKKKQHMIHGFNDE--KSRA 444
Q L+++ D + + +++ ++G +E K ++ G + E S A
Sbjct: 401 QMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSAKTER----GLDSEVDGSNA 456
Query: 445 KVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDT 504
V + ST+A G+NLV A V+ + WNP V++QA+ RA+R+GQ V + +L+T+ +
Sbjct: 457 FVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHS 516
Query: 505 AEYAKYCKQAEKDRISELVFSDRNAEND 532
E + K ++S V D E +
Sbjct: 517 VEEVILRRAERKLQLSHNVVGDNMEEKE 544
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 6/155 (3%)
Query: 378 FVRLCEAVNEKVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGF 437
++ A N +VL+F+Q LN++ D + + L + G ++ M+ F
Sbjct: 1247 LLKRLRAGNHRVLLFAQMTKMLNILEDYMN-----YRKYKYLRLDGSSTIMDRRDMVRDF 1301
Query: 438 NDEKSRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTY 497
+S V L ST+A GINL A V+ + WNP+++ QA+ RA+RLGQ K V Y
Sbjct: 1302 Q-HRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVY 1360
Query: 498 HLITQDTAEYAKYCKQAEKDRISELVFSDRNAEND 532
LI ++T E + ++K+ + +LV + + + D
Sbjct: 1361 RLICKETVEEKILHRASQKNTVQQLVMTGGHVQGD 1395
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 6/155 (3%)
Query: 378 FVRLCEAVNEKVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGF 437
++ A N +VL+F+Q LN++ D + + L + G ++ M+ F
Sbjct: 1214 LLKRLRAGNHRVLLFAQMTKMLNILEDYMN-----YRKYKYLRLDGSSTIMDRRDMVRDF 1268
Query: 438 NDEKSRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTY 497
+S V L ST+A GINL A V+ + WNP+++ QA+ RA+RLGQ K V Y
Sbjct: 1269 Q-HRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVY 1327
Query: 498 HLITQDTAEYAKYCKQAEKDRISELVFSDRNAEND 532
LI ++T E + ++K+ + +LV + + + D
Sbjct: 1328 RLICKETVEEKILHRASQKNTVQQLVMTGGHVQGD 1362
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 146/348 (41%), Gaps = 45/348 (12%)
Query: 173 LVLDEGHTPRNQRSSIW-NVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIP 231
+++DEGH +N S++ +L+ + ++R++L+GTP QN+ EL++ L + P + +
Sbjct: 528 MIVDEGHRLKNHESALAKTLLTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSV- 586
Query: 232 PELKKFCQSRLMQERKASQDFTWEQVSPGNITTGNPSDVKI-QQLKLWMDPFVHVHKGSI 290
+ + F GN++ + ++ I +L + PF+ K
Sbjct: 587 --------------QNFEEWFNAPFADRGNVSLTDEEELLIIHRLHHVIRPFILRRKKDE 632
Query: 291 LQENLPGLRDCVLILK------------PDXXXXXXXXXXXXXXXXXNFEHKLVLASVHP 338
+++ LPG +L D N +L HP
Sbjct: 633 VEKFLPGKTQVILKCDMSAWQKVYYKQVTDMGRVGLQTGSGKSKSLQNLTMQLRKCCNHP 692
Query: 339 SLFLCCTLTEKEESVVDRDRLEKLRSNPYVGAKTRFLVEFVRLCEAVNEKVLVFSQFIDP 398
LF+ ++ + R K L + ++L+FSQ
Sbjct: 693 YLFVGGDYNMWKKPEIVR-----------ASGKFELLDRLLPKLRKAGHRILLFSQMTRL 741
Query: 399 LNLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGI 458
++++ L N D+ + L + G ++ ++ FN+ S + L ST+A G+
Sbjct: 742 IDVLEIYLTLN-DY----KYLRLDGTTKTDQRGLLLKQFNEPDSPYFMFLLSTRAGGLGL 796
Query: 459 NLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAE 506
NL A V++ D WNP +++QA RA+R+GQKK V + L++ + E
Sbjct: 797 NLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVE 844
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 370 AKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQL-KSNFDWIEGQEVLCMCGKLDQK 428
+K L+E + + K ++FSQ+ L+L+ L ++NF ++ + G L Q+
Sbjct: 863 SKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVR------LDGTLSQQ 916
Query: 429 KKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRL 488
+++ ++ F+++ S VLL S KA GINL AS ++D WNP+VE QA+ R +R+
Sbjct: 917 QREKVLKEFSEDGS-ILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRI 975
Query: 489 GQKKVVYTYHLITQDTAEYAKYCKQAEKDRISELVFSDRNAENDR 533
GQ K V I + T E QA K R+ +D+ + R
Sbjct: 976 GQTKEVKIRRFIVKGTVEERMEAVQARKQRMISGALTDQEVRSAR 1020
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 423 GKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAI 482
G K+Q +++ ND L S+KA G+NL+GA+R+VL D WNP+ ++QA
Sbjct: 581 GSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAA 640
Query: 483 SRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEKDRISELVFSDRNAENDRSKSGAVNLE 542
+R +R GQKK VY Y ++ T E Y +Q K+ + + V +N + ++ E
Sbjct: 641 ARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQK-VIQHEQTDNSTRQGNLLSTE 699
Query: 543 D 543
D
Sbjct: 700 D 700
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 423 GKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAI 482
G K+Q +++ ND L S+KA G+NL+GA+R+VL D WNP+ ++QA
Sbjct: 583 GSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAA 642
Query: 483 SRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEKDRISELVFSDRNAENDRSKSGAVNLE 542
+R +R GQKK VY Y ++ T E Y +Q K+ + +++ ++ +N + ++ E
Sbjct: 643 ARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVIQHEQ-TDNSTRQGNLLSTE 701
Query: 543 D 543
D
Sbjct: 702 D 702
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 368 VGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQ 427
+ AK R L E + + +VL+FSQ+ ++D L+ D I G + G
Sbjct: 586 LSAKCRTLAELLPSMKKSGHRVLIFSQWTS----MLDILEWTLDVI-GVTYRRLDGSTQV 640
Query: 428 KKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYR 487
+Q ++ FN++KS LL ST+A +G+NL GA V++ D+ +NP ++RQA R +R
Sbjct: 641 TDRQTIVDTFNNDKSIFACLL-STRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHR 699
Query: 488 LGQKKVVYTYHLITQDTAEYAKY 510
+GQ K V + L+T+ T + Y
Sbjct: 700 IGQTKPVTIFRLVTKSTVDENIY 722
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 349 KEESVVDRDRLEKLRSNPYVGA---KTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQ 405
+ S+++R L+ +++ + A + RF+VE + K +VFSQF L+LI
Sbjct: 490 RASSILNRINLDDFKTSTKIEALREEIRFMVE-----RDWSAKAIVFSQFTSFLDLISYA 544
Query: 406 LKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASR 465
L + G + + G + + K + F +E +VLL S +A +NL AS
Sbjct: 545 LGKS-----GVSCVQLVGSMSKAAKDAALKNFKEEPD-CRVLLMSLQAGGVALNLTAASH 598
Query: 466 VVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEKDRISELVFS 525
V ++D WNP+VERQA R +R+GQ K V I + T E Q +K+ + E
Sbjct: 599 VFMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFESTLG 658
Query: 526 D 526
D
Sbjct: 659 D 659
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 368 VGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQ 427
AK L +++ +VL+FSQ L+++ D L F + V G +
Sbjct: 1002 ASAKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTFERV---DGSVAV 1058
Query: 428 KKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYR 487
+Q I FN +K+R V L ST+AC GINL A V++ D +NP + QA++RA+R
Sbjct: 1059 ADRQAAIARFNQDKNRF-VFLLSTRACGLGINLATADTVIIYDSDFNPHADIQAMNRAHR 1117
Query: 488 LGQKKVVYTYHLITQDTAE 506
+GQ K + Y L+ + + E
Sbjct: 1118 IGQSKRLLVYRLVVRASVE 1136
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 172 LLVLDEGHTPRNQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVK 223
+LV+DEGH +N S ++++L+ Q R++L+GTP QNN E+YN L ++
Sbjct: 825 VLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQ 876
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 13/198 (6%)
Query: 346 LTEKEESVVDRDRLEKLRSNPYVGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQ 405
+ + E+ + +L+K S P AK+ + EK +VF+Q+ L+L+
Sbjct: 1078 VNQSSENGENNQQLDKSFSLPATPAKS----SVGGVVNVAGEKAIVFTQWTKMLDLLEAG 1133
Query: 406 LKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASR 465
LKS+ G + GK+ + + FN V++ S KA S G+N+V A
Sbjct: 1134 LKSS-----GIQYRRFDGKMTVPARDAAVQDFNTLPD-VSVMIMSLKAASLGLNMVAACH 1187
Query: 466 VVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEKDRISELVFS 525
V++LD+ WNP+ E QAI RA+R+GQ + V +DT E Q +K ++ F
Sbjct: 1188 VIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRILALQQKKRKMVASAFG 1247
Query: 526 DRNAENDRSKSGAVNLED 543
+ + S+ +++ED
Sbjct: 1248 EH---ENGSRESHLSVED 1262
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 13/198 (6%)
Query: 346 LTEKEESVVDRDRLEKLRSNPYVGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQ 405
+ + E+ + +L+K S P AK+ + EK +VF+Q+ L+L+
Sbjct: 1035 VNQSSENGENNQQLDKSFSLPATPAKS----SVGGVVNVAGEKAIVFTQWTKMLDLLEAG 1090
Query: 406 LKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASR 465
LKS+ G + GK+ + + FN V++ S KA S G+N+V A
Sbjct: 1091 LKSS-----GIQYRRFDGKMTVPARDAAVQDFNTLPD-VSVMIMSLKAASLGLNMVAACH 1144
Query: 466 VVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKYCKQAEKDRISELVFS 525
V++LD+ WNP+ E QAI RA+R+GQ + V +DT E Q +K ++ F
Sbjct: 1145 VIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRILALQQKKRKMVASAFG 1204
Query: 526 DRNAENDRSKSGAVNLED 543
+ + S+ +++ED
Sbjct: 1205 EH---ENGSRESHLSVED 1219
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 6/158 (3%)
Query: 370 AKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKK 429
K R L + + + +K+L+FS + L+++ F +G + G
Sbjct: 528 GKMRALEKLMASWISKGDKILLFSYSVRMLDIL-----EKFLIRKGYSFARLDGSTPTNL 582
Query: 430 KQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLG 489
+Q ++ FN S+ +V L STKA G+NLV A+RVV+ D WNPS + QA R++R G
Sbjct: 583 RQSLVDDFNASPSK-QVFLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYG 641
Query: 490 QKKVVYTYHLITQDTAEYAKYCKQAEKDRISELVFSDR 527
QK+ V + L++ + E Y +Q K ++S + + +
Sbjct: 642 QKRHVVVFRLLSAGSLEELVYTRQVYKQQLSNIAVAGK 679
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 143/342 (41%), Gaps = 43/342 (12%)
Query: 173 LVLDEGHTPRNQRSSIWNVL-SRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSFPDMIP 231
+++DEGH +N ++ L + + ++R++L+GTP QN+ EL++ L + P + I
Sbjct: 510 MIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSIH 569
Query: 232 PELKKFCQSRLMQERKASQDFTWEQVSPGNITTGNPSDVKIQQLKLWMDPFVHVHKGSIL 291
+++ + + AS T + I +L + PF+ K S +
Sbjct: 570 -NFEEWFNTPFAECGSAS-------------LTDEEELLIINRLHHVIRPFLLRRKKSEV 615
Query: 292 QENLPGLRDCVLILK------------PDXXXXXXXXXXXXXXXXXNFEHKLVLASVHPS 339
++ LPG +L D N +L HP
Sbjct: 616 EKFLPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKSLQNLTMQLRKCCNHPY 675
Query: 340 LFLCCTLTEKEESVVDRDRLEKLRSNPYVGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPL 399
LF+ ++ + R K L + + ++L+FSQ +
Sbjct: 676 LFVGADYNMCKKPEIVR-----------ASGKFELLDRLLPKLKKAGHRILLFSQMTRLI 724
Query: 400 NLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGIN 459
+L+ L N D++ L + G ++ ++ FN+ S + L ST+A G+N
Sbjct: 725 DLLEIYLSLN-DYM----YLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLSTRAGGLGLN 779
Query: 460 LVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLIT 501
L A +++ D WNP +++QA RA+R+GQKK V + L++
Sbjct: 780 LQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVS 821
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Query: 374 FLVEFVRLC-------------EAVNEKVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLC 420
FL VRLC +A + +VL FS L+++ D L ++G + L
Sbjct: 1064 FLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYL-----TLKGYKYLR 1118
Query: 421 MCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQ 480
+ G+ + +I GFN S + L S +A G+NL A V+L D WNP V+ Q
Sbjct: 1119 LDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQ 1178
Query: 481 AISRAYRLGQKKVVYTYHLITQDTAE 506
A +RA+R+GQKK V T ++ E
Sbjct: 1179 AQARAHRIGQKKDVLVLRFETVNSVE 1204
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Query: 374 FLVEFVRLC-------------EAVNEKVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLC 420
FL VRLC +A + +VL FS L+++ D L ++G + L
Sbjct: 1064 FLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYL-----TLKGYKYLR 1118
Query: 421 MCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQ 480
+ G+ + +I GFN S + L S +A G+NL A V+L D WNP V+ Q
Sbjct: 1119 LDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQ 1178
Query: 481 AISRAYRLGQKKVVYTYHLITQDTAE 506
A +RA+R+GQKK V T ++ E
Sbjct: 1179 AQARAHRIGQKKDVLVLRFETVNSVE 1204
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Query: 374 FLVEFVRLC-------------EAVNEKVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLC 420
FL VRLC +A + +VL FS L+++ D L ++G + L
Sbjct: 1064 FLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYL-----TLKGYKYLR 1118
Query: 421 MCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQ 480
+ G+ + +I GFN S + L S +A G+NL A V+L D WNP V+ Q
Sbjct: 1119 LDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQ 1178
Query: 481 AISRAYRLGQKKVVYTYHLITQDTAE 506
A +RA+R+GQKK V T ++ E
Sbjct: 1179 AQARAHRIGQKKDVLVLRFETVNSVE 1204
>AT3G32330.1 | Symbols: | DNA repair protein-related |
chr3:13276082-13277155 FORWARD LENGTH=327
Length = 327
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 116/300 (38%), Gaps = 74/300 (24%)
Query: 13 SAGGCIISHAPGTGKTRLTIVFLQTYLEVFPKCRPVIIAPAIILRTWEDEFKKWNIGVPF 72
++ GCII+ P + KT L I F+ YLE P + + + P KW
Sbjct: 42 NSNGCIIAQTPLSEKTFLMISFIYGYLEKHPNSKSLFVLP------------KW------ 83
Query: 73 HNLNTPELSGKEHIDATNEVDCSGSPHKNKDAVRMAKLYSWFKEKSILGISYQLFEKLAG 132
+ + L W K SI+ + + F +
Sbjct: 84 -------------------------------VLNLEVLKRWIKTWSIIFLGAKQFSNIVS 112
Query: 133 GNSXXXXXXXXXXXXHASMKENPEPETSVLGKVLLEVPGLLVLDEGHTPRNQRSSIWNVL 192
NS + +LL + ++V D G PRN+ S V+
Sbjct: 113 DNSGAEA-------------------SDSCRDILLNILSVVVFDRGTDPRNEMMSFLKVV 153
Query: 193 SRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSF--PDMIPPELKKFCQSRLMQERKASQ 250
SRI+T +++L+G+ +QNN E++N L + P F + I +K +
Sbjct: 154 SRIKTPHKVLLTGSLYQNNIKEVFNILDVAFPEFLKHNQIGKNFRKLLNVEADGPSTNLK 213
Query: 251 DFTWEQVSPGNITTGNPSDVKI---QQLKLWMDPFVHVHKGSILQENLPGLRDCVLILKP 307
++++ ++ + KI +LK+ + ++ HKG L E +PGL D ++LKP
Sbjct: 214 MPLFDKLEEALLSQDSDHGDKICYLTELKMLTNKVIYNHKGECLLE-VPGLMDFTVVLKP 272
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 11/122 (9%)
Query: 388 KVLVFSQFIDPLNLIMD---QLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRA 444
+VL+++QF L+L+ D K ++ I+G K+ ++Q I FN + S
Sbjct: 613 RVLIYTQFQHMLDLLEDYCTHKKWQYERIDG--------KVGGAERQIRIDRFNAKNSNK 664
Query: 445 KVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDT 504
L ST+A GINL A V++ D WNP + QA++RA+RLGQ V Y LI + T
Sbjct: 665 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGT 724
Query: 505 AE 506
E
Sbjct: 725 IE 726
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 385 VNEKVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRA 444
EK +VFSQ+ LNL+ L S+ I+ + + G + + + FN
Sbjct: 964 AGEKAIVFSQWTKMLNLLEASLVSSH--IQYRR---LDGTMSVAARDKAVQDFN-TLPEV 1017
Query: 445 KVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDT 504
V++ S KA S G+N+V A V++LD+ WNP+ E QAI RA+R+GQ + V +DT
Sbjct: 1018 TVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDT 1077
Query: 505 AE 506
E
Sbjct: 1078 VE 1079
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 388 KVLVFSQFIDPLNLIMDQLKS---NFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRA 444
+VL+++QF L L+ D N++ I+G K+ ++Q I FN E S
Sbjct: 542 RVLIYTQFQHTLYLLEDYFTFKNWNYERIDG--------KISGPERQVRIDRFNAENSNR 593
Query: 445 KVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDT 504
L ST+A GINL A V++ D WNP + QA++R +RLGQ V Y LI + T
Sbjct: 594 FCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGT 653
Query: 505 AE 506
E
Sbjct: 654 VE 655
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 385 VNEKVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRA 444
EK +VFSQ+ LNL+ L S+ I+ + + G + + + FN
Sbjct: 1122 AGEKAIVFSQWTKMLNLLEASLVSSH--IQYRR---LDGTMSVAARDKAVQDFN-TLPEV 1175
Query: 445 KVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDT 504
V++ S KA S G+N+V A V++LD+ WNP+ E QAI RA+R+GQ + V +DT
Sbjct: 1176 TVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDT 1235
Query: 505 AE 506
E
Sbjct: 1236 VE 1237
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 388 KVLVFSQFIDPLNLIMDQLKS---NFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRA 444
+VL+++QF L L+ D N++ I+G K+ ++Q I FN E S
Sbjct: 501 RVLIYTQFQHTLYLLEDYFTFKNWNYERIDG--------KISGPERQVRIDRFNAENSNR 552
Query: 445 KVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDT 504
L ST+A GINL A V++ D WNP + QA++R +RLGQ V Y LI + T
Sbjct: 553 FCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGT 612
Query: 505 AE 506
E
Sbjct: 613 VE 614
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 388 KVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVL 447
K ++FSQ+ L+L+ ++ + G E + G + + + F+ +K KV+
Sbjct: 894 KTIIFSQWTGMLDLVELRILES-----GIEFRRLDGTMSLAARDRAVKEFS-KKPDVKVM 947
Query: 448 LASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEY 507
L S KA + G+N+V A V+LLD+ WNP+ E QAI RA+R+GQ + V + +DT E
Sbjct: 948 LMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVED 1007
Query: 508 AKYCKQAEKDRISELVFSDRNA 529
Q EK + F + +
Sbjct: 1008 RILKLQEEKRTMVASAFGEEHG 1029
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 14/161 (8%)
Query: 349 KEESVVDRDRLEKLRSNPYVGA---KTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQ 405
+ S+++R +L+ +++ + A + RF+VE + K +VFSQF L+LI
Sbjct: 645 RASSILNRIKLDDFQTSTKIEALREEIRFMVE-----RDGSAKAIVFSQFTSFLDLINYT 699
Query: 406 LKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASR 465
L G + + G + + I+ F ++ +V L S KA +NL AS
Sbjct: 700 LGKC-----GVSCVQLVGSMTMAARDTAINKFKEDPD-CRVFLMSLKAGGVALNLTVASH 753
Query: 466 VVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAE 506
V ++D WNP+VERQA R +R+GQ K + I ++T E
Sbjct: 754 VFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVE 794
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 11/152 (7%)
Query: 370 AKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKK 429
K + L +R + + L+F+Q L+++ F + G + + G ++
Sbjct: 1075 GKLQELAMLLRKLKFGGHRALIFTQMTKMLDVL-----EAFINLYGYTYMRLDGSTPPEE 1129
Query: 430 KQHMIHGFNDEKSRAKVLL--ASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYR 487
+Q ++ FN + K+ L ST++ GINLVGA V+ D WNP++++QA R +R
Sbjct: 1130 RQTLMQRFN---TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHR 1186
Query: 488 LGQKKVVYTYHLITQDTAEYAKYCKQAEKDRI 519
+GQ + V+ Y LI++ T E K+A + R+
Sbjct: 1187 IGQTREVHIYRLISESTIE-ENILKKANQKRV 1217
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 173 LVLDEGHTPRNQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKP 224
L+LDE H +N +S W L +++RI+L+GTP QN+ +EL++ + + P
Sbjct: 661 LILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMP 712
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 388 KVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVL 447
K ++FSQ+ L+L+ L N E + G + + + F+++ KV+
Sbjct: 828 KTIIFSQWTGMLDLVELSLIEN-----SIEFRRLDGTMSLIARDRAVKEFSNDPD-VKVM 881
Query: 448 LASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEY 507
+ S KA + G+N++ A V+LLD+ WNP+ E QAI RA+R+GQ + V + ++T E
Sbjct: 882 IMSLKAGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVED 941
Query: 508 AKYCKQAEKDRISELVFSD 526
Q EK ++ F +
Sbjct: 942 RILALQEEKRKMVASAFGE 960
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 6/149 (4%)
Query: 388 KVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVL 447
+VL+F+Q L++I L ++ + + G + +K+ ++ FN + + VL
Sbjct: 1863 RVLIFAQHKALLDIIEKDLFQAH--MKSVTYMRLDGSVVPEKRFEIVKAFNSDPT-IDVL 1919
Query: 448 LASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEY 507
L +T G+NL A +V ++ WNP + QA+ RA+RLGQK+VV + LI + T E
Sbjct: 1920 LLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEE 1979
Query: 508 AKYCKQAEKDRISELVFSDRNAENDRSKS 536
Q K ++ V NAEN K+
Sbjct: 1980 KVMSLQKFKVSVANTVI---NAENASMKT 2005
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 174 VLDEGHTPRNQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSF 226
+LDEGH +N +S I + +++ Q R+ILSGTP QNN +EL++ + P F
Sbjct: 1613 ILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGF 1665
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 6/149 (4%)
Query: 388 KVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKVL 447
+VL+F+Q L++I L ++ + + G + +K+ ++ FN + + VL
Sbjct: 1832 RVLIFAQHKALLDIIEKDLFQAH--MKSVTYMRLDGSVVPEKRFEIVKAFNSDPT-IDVL 1888
Query: 448 LASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEY 507
L +T G+NL A +V ++ WNP + QA+ RA+RLGQK+VV + LI + T E
Sbjct: 1889 LLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEE 1948
Query: 508 AKYCKQAEKDRISELVFSDRNAENDRSKS 536
Q K ++ V NAEN K+
Sbjct: 1949 KVMSLQKFKVSVANTVI---NAENASMKT 1974
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 174 VLDEGHTPRNQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSF 226
+LDEGH +N +S I + +++ Q R+ILSGTP QNN +EL++ + P F
Sbjct: 1582 ILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGF 1634
>AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=638
Length = 638
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 428 KKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYR 487
++ +H + N +L S KA + G+N+V AS V+LLD+ WNP+ E QAI RA+R
Sbjct: 491 RQSRHSTNKDNSISGLVCAMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHR 550
Query: 488 LGQKKVVYTYHLITQDTAE 506
+GQ + V + ++T E
Sbjct: 551 IGQTRAVTVTRIAIKNTVE 569
>AT3G54460.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / F-box family protein |
chr3:20162050-20167186 REVERSE LENGTH=1378
Length = 1378
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 79/152 (51%), Gaps = 10/152 (6%)
Query: 387 EKVLVFSQFIDPLNLIMDQLKSNFDWIEGQEVLCMCGKLDQKKKQHMIHGFNDEKSRAKV 446
+KVL+FSQF++ +++I QL + G + M + K + F ++ +
Sbjct: 1194 DKVLIFSQFLEHIHVIEQQLTT-----AGIKFGKMYSPMQSYNKMKALAMFQNDADCMAL 1248
Query: 447 LLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAE 506
L+ + A G++L + V L++ +W+ S+E Q ISRA+R+G K+ ++ L + T E
Sbjct: 1249 LMDGSGAL--GLDLSFVTHVFLMEPIWDKSLEEQVISRAHRMGAKRPIFVETLTMRGTIE 1306
Query: 507 --YAKYCKQAEK-DRISELVFSDRNAENDRSK 535
++ + AEK DR+ + + E RS+
Sbjct: 1307 EQMMRFLEDAEKSDRLLSGDYIEAKQETTRSR 1338
>AT3G32280.1 | Symbols: | ATP-dependent helicase family protein |
chr3:13233832-13240154 FORWARD LENGTH=474
Length = 474
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 70/214 (32%)
Query: 13 SAGGCIISHAPGTGKTRLTIVFLQTYLEVFPKCRPVIIAPAIILRTWEDEFKKWNIGVPF 72
++ GCII+ P + KT L I F+ YLE P + + + P KW
Sbjct: 331 NSNGCIIAQTPLSEKTFLMISFIYGYLEKHPNSKSLFVLP------------KW------ 372
Query: 73 HNLNTPELSGKEHIDATNEVDCSGSPHKNKDAVRMAKLYSWFKEKSILGISYQLFEKLAG 132
L+G L W K +SI+ + + F +
Sbjct: 373 ------VLNG---------------------------LKRWIKTRSIIFLGAKQFSNIVS 399
Query: 133 GNSXXXXXXXXXXXXHASMKENPEPETSVLGKVLLEVPGLLVLDEGHTPRNQRSSIWNVL 192
NS E S +LL + ++V D G PRN+ V+
Sbjct: 400 DNS------------------GAEASDSC-RDILLNILSVVVFDRGTDPRNEMMCFLKVV 440
Query: 193 SRIQTQKRIILSGTPFQNNFVELYNTLCLVKPSF 226
SRI+T +++L+G+ ++NN E++N + P+F
Sbjct: 441 SRIKTPHKVLLTGSLYKNNIKEVFNIFDVAFPNF 474
>AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases;ATP
binding;nucleic acid binding | chr2:17013535-17021315
REVERSE LENGTH=1664
Length = 1664
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 8/150 (5%)
Query: 388 KVLVFSQFIDPLNLIMDQLKSN----FDWIEGQEVLCMCGKLDQKKKQ-HMIHGFNDEKS 442
KVLVFS + D L+++ +N G++ K +K+ + E+
Sbjct: 1451 KVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQKTNSHQKEEK 1510
Query: 443 RAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITQ 502
+VLL + + G+NL+ A V+L++ + NP+ E QA+ R +R+GQ+K + +
Sbjct: 1511 SIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFLVS 1570
Query: 503 DTAEYAKYCKQAEKDRISEL-VFSDRNAEN 531
T E + Y + +++ + L FS RN +N
Sbjct: 1571 GTVEESIY--KLNRNKNTNLSSFSSRNTKN 1598
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 39/179 (21%)
Query: 373 RFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQLKSN---FDWIEGQEVLCMCGKLDQKK 429
R L++ R +VL+FS L+++ + L+ + I+G L +
Sbjct: 1314 RILIKLQR----TGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSL--------ED 1361
Query: 430 KQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLG 489
++ I FND + + L S +A G+NL A VV+ D NP E QA++RA+R+G
Sbjct: 1362 RESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIG 1421
Query: 490 QK---KVVYTYHLITQDTAEYAKYCKQAEKDRISELVFSDRNAENDRSKSGAVNLEDNV 545
Q KV+Y ++ + S E++ G+V+LED++
Sbjct: 1422 QTREVKVIYMEAVVEK---------------------LSSHQKEDELRSGGSVDLEDDM 1459
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 39/179 (21%)
Query: 373 RFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQLKSN---FDWIEGQEVLCMCGKLDQKK 429
R L++ R +VL+FS L+++ + L+ + I+G L +
Sbjct: 1315 RILIKLQR----TGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSL--------ED 1362
Query: 430 KQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLG 489
++ I FND + + L S +A G+NL A VV+ D NP E QA++RA+R+G
Sbjct: 1363 RESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIG 1422
Query: 490 QK---KVVYTYHLITQDTAEYAKYCKQAEKDRISELVFSDRNAENDRSKSGAVNLEDNV 545
Q KV+Y ++ + S E++ G+V+LED++
Sbjct: 1423 QTREVKVIYMEAVVEK---------------------LSSHQKEDELRSGGSVDLEDDM 1460
>AT3G31900.1 | Symbols: | ATP-dependent helicase family protein |
chr3:12875071-12877422 FORWARD LENGTH=393
Length = 393
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 165 VLLEVPGLLVLDEGHTPRNQRSSIWNVLSRIQTQKRIILSGTPFQNNFVELYNTLCLVKP 224
+LL + ++V G PRN+ S V+SRI+T +++L+G+ +QNN E++N L + P
Sbjct: 307 ILLNILSVVVFGRGTDPRNEMMSFLKVVSRIKTPHKVLLTGSLYQNNIKEVFNILDVAFP 366
Query: 225 SF--PDMIPPELKKF 237
F + I +KF
Sbjct: 367 EFLKHNQIGKNFRKF 381
>AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling factor18
| chr1:17848620-17853731 REVERSE LENGTH=673
Length = 673
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 84/179 (46%), Gaps = 12/179 (6%)
Query: 354 VDRDRLEKLRSNPYVGAKTRFLVEFVRLCEAVNEKVLVFSQFIDPLNLIMDQLKSNFDWI 413
++++ + K+ ++ V AK +++++ K LVF+ L+ ++
Sbjct: 453 IEKNLINKIYTDSAV-AKIPAVLDYLENVIEAGCKFLVFAHH-------QSMLEELHQFL 504
Query: 414 EGQEVLCMC--GKLDQKKKQHMIHGFNDEKSRAKVLLASTKACSEGINLVGASRVVLLDV 471
+ ++V C+ G +Q ++ F D K K + S +A GI L AS V+ ++
Sbjct: 505 KKKKVGCIRIDGSTPASSRQALVSDFQD-KDEIKAAVLSIRAAGVGITLTAASTVIFAEL 563
Query: 472 VWNPSVERQAISRAYRLGQKKVVYTYHLITQDTAEYAKY-CKQAEKDRISELVFSDRNA 529
W P QA RA+R+GQ V ++L+ DT + + Q++ D + +++ NA
Sbjct: 564 SWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLDNLGQMLDGQENA 622