Miyakogusa Predicted Gene

Lj3g3v0300690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0300690.1 Non Chatacterized Hit- tr|I1LNV0|I1LNV0_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,50.54,8e-17,seg,NULL,CUFF.40480.1
         (223 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 | chr3:88...    58   5e-09
AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 | chr5:68...    47   1e-05

>AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 |
           chr3:8832085-8835722 REVERSE LENGTH=1132
          Length = 1132

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 12/96 (12%)

Query: 129 EKPPLKWNIKEAEP--LKKSASEQELDTLWAEMDFQLILEEINSPVDIIGNNEGRENQTF 186
           + PPL       EP  ++K+  E+ELD+LW +M+  L LE ++S           +N   
Sbjct: 432 DSPPLNLRFGCEEPVLIEKTEEEKELDSLWEDMNVALTLEGMHSST-------PDKNGDM 484

Query: 187 ICK---HDFRIDDEMGEICRKCSWVANEIKYVWPPV 219
           +C    HDF +DDE+G  C  C++VA EIK + P +
Sbjct: 485 LCSKGTHDFVLDDEIGLKCVHCAYVAVEIKDISPAM 520


>AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 |
           chr5:6899015-6903266 REVERSE LENGTH=1261
          Length = 1261

 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 147 ASEQELDTLWAEMDFQLILEEINSPVDIIGNNEGRENQTFICKHDFRIDDEMGEICRKCS 206
            SE E+  LW EM+  L    I    ++  +NE  E     C+HD+R+++E+G  CR C 
Sbjct: 548 TSENEM--LWREMELCLASSYILDDNEVRVDNEAFEKARSGCEHDYRLEEEIGMCCRLCG 605

Query: 207 WVANEIKYVWPPVV 220
            V +EIK V  P  
Sbjct: 606 HVGSEIKDVSAPFA 619