Miyakogusa Predicted Gene

Lj3g3v0290390.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0290390.1 Non Chatacterized Hit- tr|I3SH56|I3SH56_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.51,0,seg,NULL;
Snf7,Snf7; coiled-coil,NULL; CHARGED MULTIVESICULAR BODY PROTEIN
1A,NULL; CHARGED MULTIVES,CUFF.40453.1
         (204 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73030.1 | Symbols: VPS46.2, CHMP1A | SNF7 family protein | c...   327   3e-90
AT1G17730.1 | Symbols: VPS46.1, CHMP1B | vacuolar protein sortin...   326   5e-90
AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein | chr2:25887...    52   3e-07

>AT1G73030.1 | Symbols: VPS46.2, CHMP1A | SNF7 family protein |
           chr1:27473938-27474848 FORWARD LENGTH=203
          Length = 203

 Score =  327 bits (838), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 161/202 (79%), Positives = 174/202 (86%)

Query: 3   GSAEKLMNQIMELKFTSKSLQRQARXXXXXXXXXXXXXXXXXXXGNMDGARIYAENAIRK 62
           G+ +KLMNQI +LKFTSKSLQRQ+R                   GNMDGARIYAENAIRK
Sbjct: 2   GNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIRK 61

Query: 63  RTEQMNYLRLSSRLDAVVARLDTQAKMNTISKSMGNIVKSLESTLATGNLQKMSETMDSF 122
           R+EQMNYLRL+SRLDAVVARLDTQAKM TI+KSM NIVKSLES+LATGNLQKMSETMDSF
Sbjct: 62  RSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDSF 121

Query: 123 EKQFVNMEVQAEFMESSMAGSTSLSTPEGDVNNLMQQVADDYGLEVSVGLPQAAAHAVPV 182
           EKQFVNMEVQAEFME++MAGSTSLSTPEG+VN+LMQQVADDYGLEVSVGLPQ A HA+P 
Sbjct: 122 EKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIPT 181

Query: 183 KEAEKVDEDDLSRRLAELKARG 204
           K  EKVDEDDLSRRLAELKARG
Sbjct: 182 KTEEKVDEDDLSRRLAELKARG 203


>AT1G17730.1 | Symbols: VPS46.1, CHMP1B | vacuolar protein sorting
           46.1 | chr1:6099210-6100153 FORWARD LENGTH=203
          Length = 203

 Score =  326 bits (836), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 160/202 (79%), Positives = 173/202 (85%)

Query: 3   GSAEKLMNQIMELKFTSKSLQRQARXXXXXXXXXXXXXXXXXXXGNMDGARIYAENAIRK 62
           G+ +KLMNQI ELKFTSKSLQRQAR                   GNMDGARIYAENAIRK
Sbjct: 2   GNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIRK 61

Query: 63  RTEQMNYLRLSSRLDAVVARLDTQAKMNTISKSMGNIVKSLESTLATGNLQKMSETMDSF 122
           R+EQMNYLRLSSRLDAVVARLDTQAKM TI+KSM NIVKSLES+L TGNLQKMSETMDSF
Sbjct: 62  RSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDSF 121

Query: 123 EKQFVNMEVQAEFMESSMAGSTSLSTPEGDVNNLMQQVADDYGLEVSVGLPQAAAHAVPV 182
           EKQFVNMEVQAEFM+++MAGSTSLSTPEG+VN+LMQQVADDYGLEVSVGLPQ A HA+P 
Sbjct: 122 EKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIPT 181

Query: 183 KEAEKVDEDDLSRRLAELKARG 204
           K  EKV+EDDL+RRLAELKARG
Sbjct: 182 KTEEKVEEDDLTRRLAELKARG 203


>AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein |
           chr2:2588740-2590285 REVERSE LENGTH=225
          Length = 225

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 69/140 (49%)

Query: 47  GNMDGARIYAENAIRKRTEQMNYLRLSSRLDAVVARLDTQAKMNTISKSMGNIVKSLEST 106
           G M   ++ A++ IR R +   + +L S+L  V  R+ T      + ++M  + K++   
Sbjct: 55  GQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQM 114

Query: 107 LATGNLQKMSETMDSFEKQFVNMEVQAEFMESSMAGSTSLSTPEGDVNNLMQQVADDYGL 166
               NL  + + M  FE+Q   ME+ +E M  ++  +      E +  +L+ QV D+ G+
Sbjct: 115 NRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGI 174

Query: 167 EVSVGLPQAAAHAVPVKEAE 186
           +++  L  A + AV V  A+
Sbjct: 175 DINQELVNAPSGAVAVPAAK 194