Miyakogusa Predicted Gene

Lj3g3v0290230.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0290230.1 tr|G7IHX8|G7IHX8_MEDTR DNA repair protein
radA-like protein OS=Medicago truncatula GN=MTR_2g100640
P,62.29,0,seg,NULL; no description,NULL; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; sms: DNA repair prot,CUFF.40443.1
         (589 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50340.1 | Symbols:  | ATP-dependent peptidases;nucleotide bi...   595   e-170

>AT5G50340.1 | Symbols:  | ATP-dependent peptidases;nucleotide
           binding;serine-type endopeptidases;DNA helicases;ATP
           binding;damaged DNA binding;nucleoside-triphosphatases |
           chr5:20491635-20495830 REVERSE LENGTH=587
          Length = 587

 Score =  595 bits (1534), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 307/550 (55%), Positives = 392/550 (71%), Gaps = 24/550 (4%)

Query: 49  IFDPPVAQQRPNDH---SDAKVGKPTPSDHSDTEVEDIPRENPTPTXXXXXXXXXXXXXX 105
           +FD   + Q  N +    D K+G     D S     + PR NP                 
Sbjct: 52  VFDLHSSNQDANSNREDKDTKIG--FSDDKSRKSGSNPPRWNPGEVVMNKSKKGKSK--- 106

Query: 106 XXXXXXTQWVCINCGHEAGQWWGTCASCDMVGTMKVFHEPKLGDADDKARNWLADVVG-- 163
                 T WVC +CGH  GQWWG+C +C  VGTMK F E     A     N         
Sbjct: 107 ------TVWVCESCGHSEGQWWGSCRACHKVGTMKRFSEGSESSASGGGGNGTGLGFTEG 160

Query: 164 ---SWLPQRPDQLRPMKLGEVNRGFNQQDWRIPLSGPFGDEVSRVLGGGLVPGSLTLVSG 220
              SWLP++   ++P +L +V  G  QQ WRI L G FG+EV+RVLGGGL PGSL L+ G
Sbjct: 161 KGLSWLPEQA-TVQPHRLTDVIHGITQQQWRISLPGLFGNEVARVLGGGLAPGSLILIGG 219

Query: 221 DPGVGKSTLLLQVAAMIADGHKGGEASPVVYVSGEESLQQIGHRADRLGIKSD-IYLYSS 279
           DPG+GKSTLLLQ+A++IA+G +  E +PV+Y+SGEES++QIG RADR+ I+++ +YL+SS
Sbjct: 220 DPGIGKSTLLLQIASIIAEGSELAEPAPVLYISGEESVEQIGSRADRMRIQTEELYLFSS 279

Query: 280 TDIEDLLKKAQSLSPRALVVDSIQTVYSKAIAASAGGPVQVKECTWALMRFAKTTNIPVL 339
           +D++D+L KA  LSPRAL++DSIQTVY K +  SAGG  QVKECT  L+RFAK +NIPV 
Sbjct: 280 SDLQDILNKAHRLSPRALIIDSIQTVYLKDVTGSAGGLTQVKECTSTLLRFAKKSNIPVF 339

Query: 340 LIGHVTKSGDIAGPRLLEHIVDVVLYMEGERYTTYRMLRAVKNRFGSTDELGVFEMSQLG 399
           L+GHVTK+GDIAGPR+LEHIVDVVLY+EGE  +TYR+LR+VKNRFGSTDELGVFEM+  G
Sbjct: 340 LVGHVTKAGDIAGPRVLEHIVDVVLYLEGEESSTYRLLRSVKNRFGSTDELGVFEMANSG 399

Query: 400 FRAVSNASEMFLTEQDSGSDVLAGLAITVIMDGSRAFVIEIQALCLPKSSVSSPQLVGIQ 459
              VSN S ++L++Q+  SDVLAGLA+ V+MDGSR+F+IE+QALC P S+VS   + G+Q
Sbjct: 400 LEVVSNPSGIYLSQQNPDSDVLAGLAVAVVMDGSRSFLIEVQALCSPGSTVSR-HVNGVQ 458

Query: 460 TNRANMIKCVLIKQAGLHLQENVLFLNVVGGMKLEESETAGDLAIAAAICSSFLEFPMPK 519
            +RA+MI  VL+KQAGL +QEN +FLNV  GM L  SETAGDLAIAAAICSSFLEFP+P 
Sbjct: 459 ASRADMIIAVLMKQAGLRIQENGIFLNVANGMAL--SETAGDLAIAAAICSSFLEFPIPH 516

Query: 520 DIAFIGEIGLSGELRTVPRIEKRIHTVAKLGYRMCVVPKQVEKVLGTVGIENMQVVCCRN 579
            +AFIGEIGL GE+RTVPR+EKR+ TVAKLG+  CVVPK VE+ L  + ++ ++++ C+N
Sbjct: 517 GVAFIGEIGLGGEVRTVPRMEKRVSTVAKLGFNKCVVPKSVEESLKALSLKEIEIIGCKN 576

Query: 580 LKEFINTVFR 589
           LKE IN VF+
Sbjct: 577 LKELINAVFK 586