Miyakogusa Predicted Gene

Lj3g3v0270520.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0270520.2 tr|F2DD79|F2DD79_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,74.55,0.000000000000004,
,CUFF.40394.2
         (108 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16250.1 | Symbols: NDF4 | NDH-dependent cyclic electron flow...   106   4e-24

>AT3G16250.1 | Symbols: NDF4 | NDH-dependent cyclic electron flow 1
           | chr3:5507091-5508320 REVERSE LENGTH=204
          Length = 204

 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 71/110 (64%), Gaps = 8/110 (7%)

Query: 6   LQLTSHAL-CSLP---SFSNSFR---PNRTFHCSKRLNFATTNIRAVGTVP-ERDLETTA 57
           +QL+   L  SLP   SFS+  +   PN  F  SK     T  +RA+ T P  +      
Sbjct: 4   VQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPAADE 63

Query: 58  TDEPPSVGFAFVSSVLLPDGTPDIHYRSATGGQKLRDIMLDSNIELYGPY 107
            DEPP+V FAFV SVLLPDGTPD+H+R A GGQKLRDIMLDSNIELYGPY
Sbjct: 64  PDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPY 113