Miyakogusa Predicted Gene
- Lj3g3v0260450.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0260450.1 tr|Q2QMR8|Q2QMR8_ORYSJ Os12g0594000 protein
OS=Oryza sativa subsp. japonica GN=LOC_Os12g40260 PE=4
S,44.64,1e-16,WD40 repeat-like,WD40-repeat-containing domain; WD40
repeats,WD40 repeat; WD40,WD40 repeat; no descr,CUFF.40829.1
(134 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18950.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 82 1e-16
AT2G26490.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 79 6e-16
AT3G50390.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 78 2e-15
AT1G49450.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 78 2e-15
AT1G24530.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 75 1e-14
AT4G34380.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 74 3e-14
AT5G50120.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 70 4e-13
AT1G24130.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 68 2e-12
AT1G47610.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 61 2e-10
AT3G51930.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 54 3e-08
AT1G49040.1 | Symbols: SCD1 | stomatal cytokinesis defective / S... 48 2e-06
>AT3G18950.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:6536900-6538321 FORWARD LENGTH=473
Length = 473
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 19 LQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRCV 78
L +GG+++GH AV+CLA+ V+SG AD VW R DG H+CL+VL+ H GP++C+
Sbjct: 371 LSHGGTLRGHRLAVLCLAAAGSLVLSGGADKNICVWRRNGDGSHSCLSVLMDHVGPVKCL 430
Query: 79 SAF-IGGTRLVEDNEDSCTVCTGSLDGVLKLWRVSHT 114
+A G E + V +GSLD +K+WRV+ +
Sbjct: 431 TAVEDDGEGHREKGDQKWIVYSGSLDKSVKVWRVTES 467
>AT2G26490.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:11268035-11269432 FORWARD LENGTH=465
Length = 465
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Query: 18 QLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQ-HTCLAVLVGHRGPIR 76
QL YGG ++GH AV+CL V SGSAD T VW R DG HTCL+VL GH GP++
Sbjct: 327 QLNYGGILKGHKLAVLCLEVAGSLVFSGSADKTICVWKR--DGNIHTCLSVLTGHTGPVK 384
Query: 77 CVSAFIGGTRLVEDNEDSCTVCTGSLDGVLKLWRVSHT 114
C+ A E + V +GSLD +K+W VS +
Sbjct: 385 CL-AVEADREASERRDKKWIVYSGSLDKSVKVWGVSES 421
>AT3G50390.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:18702137-18703546 FORWARD LENGTH=469
Length = 469
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 15/111 (13%)
Query: 18 QLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGR-EQDGQHTCLAVLVGHRGPIR 76
++ GG ++GH AV+CL + + SGSAD RVW R E G+H CL+VL GH GP++
Sbjct: 332 NMKNGGVLKGHKLAVLCLVAAGNLMFSGSADLGIRVWRRPEGGGEHVCLSVLTGHAGPVK 391
Query: 77 CVSAFIGGTRLVEDNEDSCT------VCTGSLDGVLKLWRVSHTNNQCSSQ 121
C++ VE +++S + V +GSLD +K+WRVS ++ +Q
Sbjct: 392 CLA--------VERDQESVSGERRWIVYSGSLDRSVKMWRVSESSPPMVNQ 434
>AT1G49450.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:18305684-18307099 FORWARD LENGTH=471
Length = 471
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 21/108 (19%)
Query: 19 LQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRCV 78
L + G+I GH AV+CLA+ ++SG AD VW R DG HTCL+VL+ H GP++C+
Sbjct: 367 LTHKGTIHGHRMAVLCLATAGSLLLSGGADKNICVWKRNGDGSHTCLSVLMDHEGPVKCL 426
Query: 79 SAFIGGTRLVEDNEDS--------------CTVCTGSLDGVLKLWRVS 112
+A VE+ E+ V +GSLD +K+WRV+
Sbjct: 427 AA-------VEEAEEDHNDGDDGGEKGDQRWIVYSGSLDNSVKVWRVT 467
>AT1G24530.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:8693287-8694543 FORWARD LENGTH=418
Length = 418
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
Query: 23 GSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRCVSAFI 82
G+++GH A++ L +VS ++SGSAD T R+W R D ++CL VL GH P++ ++A
Sbjct: 320 GALRGHDKAILSLFNVSDLLLSGSADRTVRIWRRGPDSSYSCLEVLSGHTKPVKSLAAVR 379
Query: 83 GGTRLVEDNEDSCTVCTGSLDGVLKLWRVSHTNNQCS 119
++ +D ++ +GSLDG +K W+VS T S
Sbjct: 380 E-----KELDDVVSIISGSLDGEVKCWKVSVTKPDNS 411
>AT4G34380.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:16438835-16440322 FORWARD LENGTH=495
Length = 495
Score = 73.9 bits (180), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 22 GGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGRE-QDGQHTCLAVLVGHRGPIRCVSA 80
GG ++GH AV+CL ++SGSAD VW R+ D H CL+VL GH GP++C++
Sbjct: 360 GGILKGHKSAVLCLGIAGNLLLSGSADKNICVWRRDPSDKSHQCLSVLTGHMGPVKCLAV 419
Query: 81 ------FIGGTRLVEDNEDSCTVCTGSLDGVLKLWRVS 112
G V + + + +GSLD +K+WRVS
Sbjct: 420 EEERACHQGAKASVAEGDRKWIIYSGSLDKSVKVWRVS 457
>AT5G50120.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:20382630-20383796 REVERSE LENGTH=388
Length = 388
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 17 GQLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIR 76
G + G ++GHT +V+CLA VS + SGSAD T R+W + ++CLA+L GH GP++
Sbjct: 293 GDIVVVGMLRGHTESVLCLAVVSDILCSGSADKTVRLW-KCSAKDYSCLAMLEGHLGPVK 351
Query: 77 CVSAFIGGTRLVEDNEDSCTVCTGSLDGVLKLWRV 111
C++ +R + +E S + +G LD +K+W+V
Sbjct: 352 CLTGAFRDSR--KADEASYHIYSGGLDSQVKVWQV 384
>AT1G24130.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:8534183-8535430 REVERSE LENGTH=415
Length = 415
Score = 68.2 bits (165), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 63/95 (66%), Gaps = 8/95 (8%)
Query: 23 GSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGR---EQDGQHTCLAVLVGHRGPIRCVS 79
G+++GH A+MCLA S V+SGSAD + RVW R E++G ++CLAVL GH P++ ++
Sbjct: 322 GALRGHRKAIMCLAVASDLVLSGSADKSLRVWRRGLMEKEG-YSCLAVLEGHTKPVKSLA 380
Query: 80 AFIGGTRLVEDNEDSCTVCTGSLDGVLKLW--RVS 112
+ + +++ SC V +GSLD LK+W RVS
Sbjct: 381 VSV--SDSDSNSDYSCMVYSGSLDLSLKVWNLRVS 413
>AT1G47610.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:17504836-17505891 FORWARD LENGTH=351
Length = 351
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 9 NFFSFHFAGQLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVL 68
NF+ L++ + H AV+C+A+ + + SG+AD VW RE HTC++VL
Sbjct: 246 NFWEMGDKKLLKHCEVFKKHRLAVLCIAAAGKLLFSGAADKKICVWRREGK-VHTCVSVL 304
Query: 69 VGHRGPIRCVSAFIGGTRLVEDNEDSCTVC-TGSLDGVLKLWRV 111
GH GP++C++ ED D V +GSLD +K+WRV
Sbjct: 305 TGHTGPVKCLAVVEPSGGEEEDGGDGRLVLYSGSLDKSVKVWRV 348
>AT3G51930.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:19271672-19272919 FORWARD LENGTH=415
Length = 415
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 18 QLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRC 77
+ + G +GH AV+C+ V V SGSAD + +W RE G V+ GH GP++C
Sbjct: 307 EWRLGFETRGHNMAVLCMCVVGEMVCSGSADKSIGLWRREVTGMLCKFGVIHGHEGPVKC 366
Query: 78 VSAFIGGTRLVEDNEDSCTVCTGSLDGVLKLWRVSHTNNQCSSQAGVK 125
+ A + +G LD L++W V +N ++ K
Sbjct: 367 LQASPNNVGA------GFMLYSGGLDKSLRVWWVPKQDNLEEKKSSFK 408
>AT1G49040.1 | Symbols: SCD1 | stomatal cytokinesis defective / SCD1
protein (SCD1) | chr1:18139419-18148826 REVERSE
LENGTH=1187
Length = 1187
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 25 IQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRCV--SAFI 82
++GHT + + V +++GS D T+RVW + +C AVL H GP++ V S F
Sbjct: 1018 LKGHTKWIRSIRMVEDTLITGSDDWTARVWSVSRG---SCDAVLACHAGPVQSVEYSPFD 1074
Query: 83 GGTRLVEDNEDSCTVCTGSLDGVLKLWRVSHTNNQC 118
G + TGS DG+L+ W +C
Sbjct: 1075 KG------------IITGSADGLLRFWENDEGGIKC 1098