Miyakogusa Predicted Gene

Lj3g3v0258390.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0258390.1 Non Chatacterized Hit- tr|I1K9D0|I1K9D0_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,35.64,0.000000000006,WD40,WD40 repeat; seg,NULL;
WD_REPEATS_2,WD40 repeat; WD_REPEATS_REGION,WD40-repeat-containing
domai,CUFF.40828.1
         (202 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G50390.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    69   3e-12
AT4G34380.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    62   2e-10
AT2G26490.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    57   1e-08
AT1G49450.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    54   6e-08
AT1G47610.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    54   7e-08
AT3G18950.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    53   2e-07

>AT3G50390.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:18702137-18703546 FORWARD LENGTH=469
          Length = 469

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 7/121 (5%)

Query: 69  KVSSDSLSDPQTTYH---CASSVLRNDGQVLSIALSSNNGFVYTGSDSNLVRVWKLPEFT 125
           KV++D+  +  T +       S++R +G + S+A S +   +YTGSDS  +RVWK     
Sbjct: 72  KVTTDTTKEKSTNHSPNILLGSLVREEGHIYSLATSGD--LLYTGSDSKNIRVWK--NHV 127

Query: 126 EFGQLRTKACRVVALEVSNDTVYAAYGDGKIRTWTRTWDKVLKHVRLATIPKKVGYVRSY 185
           EF   ++ +  V A+ ++ D ++  + DGKIR W     +   H R+ T+P  + Y+R+ 
Sbjct: 128 EFSSFKSNSGLVKAIVLAGDKIFTGHQDGKIRVWKAASKESNVHRRVGTMPNLLDYIRNS 187

Query: 186 I 186
           I
Sbjct: 188 I 188


>AT4G34380.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr4:16438835-16440322 FORWARD LENGTH=495
          Length = 495

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 87  SVLRNDGQVLSIALSSNNGFVYTGSDSNLVRVWKLPEFTEFGQLRTKACRVVALEVSNDT 146
           S++R +G + S+A S +   +YTGSDS  +RVWK     E    ++ +  + A+ +  D 
Sbjct: 120 SIVRKEGHIYSLAASGD--LLYTGSDSKNIRVWK--NLKEHAGFKSSSGLIKAIVIFGDR 175

Query: 147 VYAAYGDGKIRTWTRTWDKVLKHVRLATIPKKVGYVRSYI 186
           ++  + DGKIR W  +  K  KH R+ T+P     V+S +
Sbjct: 176 IFTGHQDGKIRIWKVSKRKPGKHKRVGTLPTFKSMVKSSV 215


>AT2G26490.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr2:11268035-11269432 FORWARD LENGTH=465
          Length = 465

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 87  SVLRNDGQVLSIALSSNNGFVYTGSDSNLVRVWKLPEFTEFGQLRTKACRVVALEVSNDT 146
           S++R +G + S+A + +   +YTGSDS  +RVWK     EF   +  +  V A+ +S + 
Sbjct: 91  SLVREEGHIYSLAATKD--LLYTGSDSKNIRVWK--NLKEFSAFKCNSGLVKAIVISGEK 146

Query: 147 VYAAYGDGKIRTWTRTWDKVLKHVRLATIP 176
           ++  + DGKIR W  +      H R  T+P
Sbjct: 147 IFTGHQDGKIRVWKVSPKNQSLHKRSGTLP 176


>AT1G49450.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr1:18305684-18307099 FORWARD LENGTH=471
          Length = 471

 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 7/107 (6%)

Query: 71  SSDSLSDPQTTYHCASSVLRNDGQVLSIALSSNNGFVYTGSDSNLVRVWKLPEFTEFGQL 130
           +SD   DP        +V+R +G V S+A S +   ++TGSDS  +RVWK  +  +F   
Sbjct: 115 NSDFEDDPDNG--LIGTVVRQEGHVYSLAASGD--LLFTGSDSKNIRVWK--DLKDFSGF 168

Query: 131 RTKACRVVALEVSNDT-VYAAYGDGKIRTWTRTWDKVLKHVRLATIP 176
           ++ +  V A+ V+ D  V+  + DGKIR W  +     K+ R+ ++P
Sbjct: 169 KSTSGFVKAIVVTRDNRVFTGHQDGKIRVWRGSKKNPEKYSRVGSLP 215


>AT1G47610.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr1:17504836-17505891 FORWARD LENGTH=351
          Length = 351

 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 88  VLRNDGQVLSIALSSNNGFVYTGSDSNLVRVWKLPEFTEFGQLRTKACRVVALEVSNDT- 146
           ++R +G + S+A  + N  +YTGSD+N +RVWK     EF   ++ +  V A+ +S +  
Sbjct: 20  IVREEGHIYSLA--ATNDLLYTGSDNNYIRVWK--NLNEFSGFKSNSGLVKAIVISREAK 75

Query: 147 VYAAYGDGKIRTW 159
           V+  + DGKIR W
Sbjct: 76  VFTGHQDGKIRVW 88


>AT3G18950.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:6536900-6538321 FORWARD LENGTH=473
          Length = 473

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 7/102 (6%)

Query: 77  DPQTTYHCASSVLRNDGQVLSIALSSNNGFVYTGSDSNLVRVWK-LPEFTEFGQLRTKAC 135
           D  T      +++R DG V S+A S +   ++TGSDS  +RVWK L + T F   ++ + 
Sbjct: 123 DDDTDNGLIGTIVRQDGHVYSLAASGD--LLFTGSDSKNIRVWKDLKDHTGF---KSTSG 177

Query: 136 RVVALEVSNDT-VYAAYGDGKIRTWTRTWDKVLKHVRLATIP 176
            V A+ ++ D  ++  + DGKIR W  +  +   + R+ ++P
Sbjct: 178 LVKAIVITGDNRIFTGHQDGKIRVWRGSKRRTGGYSRIGSLP 219