Miyakogusa Predicted Gene

Lj3g3v0247260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0247260.1 Non Chatacterized Hit- tr|D8QWI2|D8QWI2_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,54.79,0.000000000000001,Ribosomal_S17,Ribosomal protein
S17; no description,Nucleic acid-binding, OB-fold; Nucleic
acid-bind,CUFF.40389.1
         (153 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G79850.1 | Symbols: RPS17, CS17, PRPS17 | ribosomal protein S...   140   3e-34

>AT1G79850.1 | Symbols: RPS17, CS17, PRPS17 | ribosomal protein S17
           | chr1:30041473-30041922 REVERSE LENGTH=149
          Length = 149

 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/124 (57%), Positives = 90/124 (72%), Gaps = 4/124 (3%)

Query: 9   KLSNPFIHG-TPFTPLSKPATALTHHTHSPPSFLPSIKAMKSIQGKVVCSASDKTVAVEV 67
           KLS+PF HG TP + LSKP +   H     P+ +P I+AMK++QG+VVC+ SDKTVAVEV
Sbjct: 14  KLSSPFAHGSTPLSSLSKPNSFPNHRM---PALVPVIRAMKTMQGRVVCATSDKTVAVEV 70

Query: 68  VRLAPHPXXXXXXXXXXXXQAHDPENQFKVGDIVQLTKTRPISKTKAFLALPVPSRGAKN 127
           VRLAPHP            QAHDP+NQFKVGD+V+L K+RPISKTK+F+ALPV +R A+ 
Sbjct: 71  VRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAARK 130

Query: 128 KPSG 131
             +G
Sbjct: 131 AEAG 134