Miyakogusa Predicted Gene

Lj3g3v0235100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0235100.1 tr|Q014K1|Q014K1_OSTTA Ribosomal protein L37
(ISS) OS=Ostreococcus tauri GN=Ot07g04050 PE=3
SV=1,74.6,4e-19,Ribosomal_L37e,Ribosomal protein L37e; 60S RIBOSOMAL
PROTEIN L37,NULL; 60S RIBOSOMAL PROTEIN L37,Rib,CUFF.40373.1
         (79 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16080.1 | Symbols:  | Zinc-binding ribosomal protein family ...   119   3e-28
AT1G15250.1 | Symbols:  | Zinc-binding ribosomal protein family ...   119   4e-28
AT1G52300.1 | Symbols:  | Zinc-binding ribosomal protein family ...   116   3e-27

>AT3G16080.1 | Symbols:  | Zinc-binding ribosomal protein family
          protein | chr3:5454892-5455677 FORWARD LENGTH=95
          Length = 95

 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/64 (89%), Positives = 61/64 (95%)

Query: 1  MGKGTGSFGKRRNKPPTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK  TLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRV 64
          TGR+
Sbjct: 61 TGRM 64


>AT1G15250.1 | Symbols:  | Zinc-binding ribosomal protein family
          protein | chr1:5248825-5249381 REVERSE LENGTH=95
          Length = 95

 Score =  119 bits (298), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 57/64 (89%), Positives = 61/64 (95%)

Query: 1  MGKGTGSFGKRRNKPPTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK  TLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRV 64
          TGR+
Sbjct: 61 TGRM 64


>AT1G52300.1 | Symbols:  | Zinc-binding ribosomal protein family
          protein | chr1:19475213-19476152 REVERSE LENGTH=95
          Length = 95

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/64 (87%), Positives = 60/64 (93%)

Query: 1  MGKGTGSFGKRRNKPPTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK  TLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRV 64
          TGR+
Sbjct: 61 TGRM 64