Miyakogusa Predicted Gene

Lj3g3v0234080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0234080.1 Non Chatacterized Hit- tr|I1K5V0|I1K5V0_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,37.37,4e-18,seg,NULL,CUFF.40363.1
         (209 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15260.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    87   1e-17
AT3G16070.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    74   1e-13

>AT1G15260.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G16070.1); Has 28 Blast hits to 28 proteins in
           7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:5249834-5250370 FORWARD
           LENGTH=178
          Length = 178

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 101/210 (48%), Gaps = 43/210 (20%)

Query: 5   ETIRKTKLLLHKSLKNFKSFFGG--YQKLPRSLSF-NPFLG--RSGNTSRTYTSDQFYNE 59
           ++I++    L K+L + KS      Y+ LP      +P+    R    S+T T + +   
Sbjct: 7   KSIQRVGRFLKKTLGSIKSTICSSDYKNLPNDTPLLSPYSCSRRCPEDSQTQTKESYTVI 66

Query: 60  FYDMLQSDLSRMNRSEHDISMRRPKEVEEPMGDXXXXXXXXXXXXXXXXXXXXXXXXXXX 119
             D   +D +   +S ++   ++PK+V EP  D                           
Sbjct: 67  CCDTAVADTTH-QKSLNNQHKKKPKKVAEPFED--------------------------- 98

Query: 120 XDLNSKNKNEEGVHDLAQKMKELEMADSGDVEHVLDIEEALHYYSRLTSPVYLDIVDKFF 179
               +K + +     LAQKMK+L M D  DV+H LD+ EAL  YS + SPVYLDIVD FF
Sbjct: 99  ----AKKRGDA----LAQKMKDLNMVDLRDVDHALDVREALRCYSSIRSPVYLDIVDNFF 150

Query: 180 TDMHSEINLPQSSVSIKHSKSKRRFGSIRL 209
           TDM+ E + P++S  I  + S+R+ GS RL
Sbjct: 151 TDMYYEFSDPRTSAKI--NGSRRKAGSFRL 178


>AT3G16070.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G15260.1); Has 26 Blast hits to 26 proteins in
           7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:5451864-5452316 REVERSE
           LENGTH=150
          Length = 150

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 43/50 (86%)

Query: 135 LAQKMKELEMADSGDVEHVLDIEEALHYYSRLTSPVYLDIVDKFFTDMHS 184
           + +K+ E+ M ++ D+E  LD+EEALHYYSR++SPVYL+IVDKFFTD++S
Sbjct: 101 MEKKINEMYMTETVDIEQALDVEEALHYYSRISSPVYLNIVDKFFTDLYS 150