Miyakogusa Predicted Gene
- Lj3g3v0201900.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0201900.2 tr|Q5VRY6|Q5VRY6_ORYSJ Os01g0183400 protein
OS=Oryza sativa subsp. japonica GN=P0489A01.12 PE=4
SV=1,38.4,0.00000000002,SUBFAMILY NOT NAMED,NULL; HISTONE-LIKE
TRANSCRIPTION FACTOR CCAAT-RELATED,NULL;
CBFD_NFYB_HMF,Transc,CUFF.40346.2
(134 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G43250.1 | Symbols: NF-YC13 | nuclear factor Y, subunit C13 |... 128 1e-30
AT1G07980.1 | Symbols: NF-YC10 | nuclear factor Y, subunit C10 |... 52 8e-08
AT3G12480.1 | Symbols: NF-YC11 | nuclear factor Y, subunit C11 |... 49 9e-07
AT5G19490.1 | Symbols: | Histone superfamily protein | chr5:657... 49 1e-06
AT5G63470.2 | Symbols: NF-YC4 | nuclear factor Y, subunit C4 | c... 47 5e-06
AT5G63470.1 | Symbols: NF-YC4 | nuclear factor Y, subunit C4 | c... 47 5e-06
AT3G48590.1 | Symbols: HAP5A, ATHAP5A, NF-YC1 | nuclear factor Y... 46 6e-06
>AT5G43250.1 | Symbols: NF-YC13 | nuclear factor Y, subunit C13 |
chr5:17356174-17356566 REVERSE LENGTH=130
Length = 130
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 86/126 (68%), Gaps = 3/126 (2%)
Query: 9 EEEKARSPELPRVRVKKIMTVDKEVQRVSSEALFLVSLSTQLFLEFLAENSAKIAIDKKR 68
EEE + PE P RVKKIM +DK++ +++SEAL +++ ST+LFL FLAE SA + +KKR
Sbjct: 3 EEEGSIRPEFPIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSAVVTAEKKR 62
Query: 69 KTVNLEHLRIAVKRHRPTSDFLLDSLPMPLPAHXXXXXXXXXXXXXXXXGVGSTRRIDHF 128
KTVNL+HLRIAVKRH+PTSDFLLDSL PLPA +G TRRID F
Sbjct: 63 KTVNLDHLRIAVKRHQPTSDFLLDSL--PLPAQPVKHTKSVSDKKIPAPPIG-TRRIDDF 119
Query: 129 FRKSDA 134
F K A
Sbjct: 120 FSKGKA 125
>AT1G07980.1 | Symbols: NF-YC10 | nuclear factor Y, subunit C10 |
chr1:2473523-2474910 REVERSE LENGTH=206
Length = 206
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 4 DSGSAEEEKARSPELPRVRVKKIMTVDKEVQRVSSEALFLVSLSTQLFLEFLAENSAKIA 63
D G AE+ K + P R+++IM D ++ +A+FLV+ +T++F+E +E + +
Sbjct: 99 DDGGAEDAKIK---FPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSS 155
Query: 64 IDKKRKTVNLEHLRIAVKRHRPTSDFLLDSLPMPLPAH 101
+ K+K ++ +HL V + +FL DS+P L A
Sbjct: 156 VKDKKKFIHYKHLSSVVSNDQ-RYEFLADSVPEKLKAE 192
>AT3G12480.1 | Symbols: NF-YC11 | nuclear factor Y, subunit C11 |
chr3:3958065-3960278 FORWARD LENGTH=293
Length = 293
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 18 LPRVRVKKIMTVDKEVQRVSSEALFLVSLSTQLFLEFLAENSAKIAIDKKRKTVNLEHLR 77
P R+KKIM D++V +++ LVS S +LFL+ L + + +I +++ KTV+ HL+
Sbjct: 9 FPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLK 68
Query: 78 IAVKRHRPTSDFL 90
V+R+ DFL
Sbjct: 69 HCVERYN-VFDFL 80
>AT5G19490.1 | Symbols: | Histone superfamily protein |
chr5:6576769-6578273 REVERSE LENGTH=264
Length = 264
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 18 LPRVRVKKIMTVDKEVQRVSSEALFLVSLSTQLFLEFLAENSAKIAIDKKRKTVNLEHLR 77
P R+KKIM D+EV +++ LVS + +LFL+ L ++ + + + KTVN HL+
Sbjct: 9 FPATRIKKIMQTDEEVGKIAMAVPLLVSKALELFLQDLCNHTYDVTLSRGAKTVNAFHLK 68
Query: 78 IAVKRHRPTSDFLLDSL 94
V+ DFL D++
Sbjct: 69 QCVQATN-VFDFLRDTV 84
>AT5G63470.2 | Symbols: NF-YC4 | nuclear factor Y, subunit C4 |
chr5:25416332-25417084 REVERSE LENGTH=250
Length = 250
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 17 ELPRVRVKKIMTVDKEVQRVSSEALFLVSLSTQLFLEFLAENSAKIAIDKKRKTVNLEHL 76
+LP R+KKIM D++V+ +S+EA L + + +LF+ L S A + KR+T+ +
Sbjct: 78 QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 137
Query: 77 RIAVKRHRPTSDFLLDSLP 95
A+ R DFL+D +P
Sbjct: 138 AAAITRTD-IFDFLVDIVP 155
>AT5G63470.1 | Symbols: NF-YC4 | nuclear factor Y, subunit C4 |
chr5:25416037-25417084 REVERSE LENGTH=250
Length = 250
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 17 ELPRVRVKKIMTVDKEVQRVSSEALFLVSLSTQLFLEFLAENSAKIAIDKKRKTVNLEHL 76
+LP R+KKIM D++V+ +S+EA L + + +LF+ L S A + KR+T+ +
Sbjct: 78 QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 137
Query: 77 RIAVKRHRPTSDFLLDSLP 95
A+ R DFL+D +P
Sbjct: 138 AAAITRTD-IFDFLVDIVP 155
>AT3G48590.1 | Symbols: HAP5A, ATHAP5A, NF-YC1 | nuclear factor Y,
subunit C1 | chr3:18008893-18009938 REVERSE LENGTH=234
Length = 234
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 17 ELPRVRVKKIMTVDKEVQRVSSEALFLVSLSTQLFLEFLAENSAKIAIDKKRKTVNLEHL 76
+LP R+KKIM D++V+ +S+EA L + + +LF+ L S A + KR+T+ +
Sbjct: 65 QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 124
Query: 77 RIAVKRHRPTSDFLLDSLP 95
A+ R DFL+D +P
Sbjct: 125 AAAITRTD-IFDFLVDIVP 142