Miyakogusa Predicted Gene
- Lj3g3v0200830.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0200830.1 tr|A9RES0|A9RES0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_65167
,35.33,3e-16,BAH,Bromo adjacent homology (BAH) domain;
seg,NULL,NODE_60913_length_2519_cov_13.786423.path2.1
(641 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G11470.1 | Symbols: | bromo-adjacent homology (BAH) domain-c... 202 5e-52
AT3G15605.4 | Symbols: | nucleic acid binding | chr3:5288291-52... 116 4e-26
AT3G15605.3 | Symbols: | nucleic acid binding | chr3:5288774-52... 89 9e-18
AT3G15605.2 | Symbols: | nucleic acid binding | chr3:5288774-52... 89 9e-18
AT3G15605.1 | Symbols: | nucleic acid binding | chr3:5288774-52... 84 3e-16
>AT5G11470.1 | Symbols: | bromo-adjacent homology (BAH)
domain-containing protein | chr5:3662757-3667041 REVERSE
LENGTH=757
Length = 757
Score = 202 bits (515), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 118/158 (74%), Gaps = 6/158 (3%)
Query: 28 NVRFYESFTYDGVDYALYDSVFLFKEGEP---EPFIGKLIKIWESADKS--KKVRVLWYF 82
+V+FYESFTYDG +Y LYD V + EP EPFIG +IKIWE A+K KKV++LW+F
Sbjct: 26 DVQFYESFTYDGDEYRLYDCVLVGNASEPDSTEPFIGMIIKIWEHANKHIPKKVKLLWFF 85
Query: 83 RPCEILNFLDGY-ETLENELFLASGEGLGLANVNPLEAIAGKCIVVCISKDNRNPQLSDE 141
+P EI +L+G L NE+FLASGEGLGLAN N LEAI GKC V+CISKD RNPQ SDE
Sbjct: 86 KPSEIAPYLEGVPNVLANEVFLASGEGLGLANTNQLEAIGGKCSVLCISKDKRNPQPSDE 145
Query: 142 ELQMADFVFSHCFDVGKCEISDKIDDKIAGVEVKNIFN 179
+ ADFVF FDVG C++ D IDDKIAGV+VK IFN
Sbjct: 146 KFNSADFVFCRAFDVGSCKVVDTIDDKIAGVDVKFIFN 183
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
Query: 463 PWEDKSKTAYEQRRVVLFENLDPSLTSSEVQDIISHGFKESCTAQMIPQTTYSSPHSGQA 522
PWE+ + A ++ VVL +NLDP+ TS EV+DI+ + C A+MI +T+ + PH G+A
Sbjct: 519 PWEESMREAEKKGTVVLLQNLDPTYTSDEVEDIVYSALNQQCEARMIERTSVTIPHIGEA 578
Query: 523 LVIFQRKETAELVIRKLEDGCFLMSNGRPLVGRIALPFFPEKKPTFYGHLAIDHLRLQMQ 582
LVIF+ +E AE VIR+L++GC L+S+GRPLV A P K F GH+ + + Q +
Sbjct: 579 LVIFKTREVAERVIRRLDEGCLLLSSGRPLVASFAKITPPGKPSLFSGHIKLH--KTQTR 636
Query: 583 REMKDAVSTSHCSQPNNIEFDMAVEWCLLQERADKAWRMLYQQQGEE 629
REM+DAV+TSH SQPNN+EFDMA+EWCL Q R ++A + ++Q EE
Sbjct: 637 REMRDAVATSHSSQPNNLEFDMAMEWCLHQARHEQASESVSKRQLEE 683
>AT3G15605.4 | Symbols: | nucleic acid binding |
chr3:5288291-5290941 FORWARD LENGTH=481
Length = 481
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 85/166 (51%), Gaps = 37/166 (22%)
Query: 14 FKWGKPRGVGVKNKNVRFYESFTYDGVDYALYDSVFLFKEGEPEPFIGKLIKIWESADKS 73
FKWG RGVG K+ VRFYESFT +G++Y L+D + ++
Sbjct: 15 FKWGAKRGVGRKDNKVRFYESFTLEGIEYRLFDCAYFYR--------------------- 53
Query: 74 KKVRVLWYFRPCEILNFLDGYETLENELFLASGEGLGLANVNPLEAIAGKCIVVCISKDN 133
FL YE +ELFLA G+ G++N+N +E I GKC VVC S D
Sbjct: 54 ----------------FLGEYEPQWDELFLACGDEKGVSNINDVETIMGKCNVVCTSDDR 97
Query: 134 RNPQLSDEELQMADFVFSHCFDVGKCEISDKIDDKIAGVEVKNIFN 179
RNP+ +EL+ A ++FS FD IS+ D IAG+ V +FN
Sbjct: 98 RNPRPGTKELRRAKYIFSRTFDTRLRIISEDFADAIAGIGVDKLFN 143
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 103/196 (52%), Gaps = 19/196 (9%)
Query: 405 VEEVPSKKRKVDMKS--TKVSGDKPCKEASTIPQSVDHKLDSGVTKVTRRP----DRSKW 458
V PSKKRK+ + + T S D+ PQS + KL V + P ++ W
Sbjct: 245 VNAKPSKKRKLILNTPETDDSDDQG-------PQSGEKKLIKNPPLVEKAPSQNIEKKSW 297
Query: 459 FKAMPWEDKSKTAYEQRRVVLFENLDPSLTSSEVQDIISHGFKESCTAQMIPQTTYSSPH 518
+K +P+ED+ K A E+ RV+L ENL+PS TS EV+ + FKE A+MIP + SSPH
Sbjct: 298 YKKLPFEDELKPAIEKGRVLLIENLEPSYTSLEVEFLFRQAFKEGVDAKMIPSSPMSSPH 357
Query: 519 SGQALVIFQRKETAELVIRKLEDGCFLMSNGRPLVGRIALPFFPEKKPTFYGHLAIDHLR 578
SG+ALVIF + A+ + +L + C ++S R L G +P + +F GH +
Sbjct: 358 SGRALVIFGTTKAADSAMSRLNEDCLMLSGQRALTGSKNVPVEIGRCRSFTGHFNM---- 413
Query: 579 LQMQREMKDAVSTSHC 594
+ R + A S C
Sbjct: 414 --VDRSLMTAQKVSCC 427
>AT3G15605.3 | Symbols: | nucleic acid binding |
chr3:5288774-5290941 FORWARD LENGTH=397
Length = 397
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 103/196 (52%), Gaps = 19/196 (9%)
Query: 405 VEEVPSKKRKVDMKS--TKVSGDKPCKEASTIPQSVDHKLDSGVTKVTRRP----DRSKW 458
V PSKKRK+ + + T S D+ PQS + KL V + P ++ W
Sbjct: 161 VNAKPSKKRKLILNTPETDDSDDQG-------PQSGEKKLIKNPPLVEKAPSQNIEKKSW 213
Query: 459 FKAMPWEDKSKTAYEQRRVVLFENLDPSLTSSEVQDIISHGFKESCTAQMIPQTTYSSPH 518
+K +P+ED+ K A E+ RV+L ENL+PS TS EV+ + FKE A+MIP + SSPH
Sbjct: 214 YKKLPFEDELKPAIEKGRVLLIENLEPSYTSLEVEFLFRQAFKEGVDAKMIPSSPMSSPH 273
Query: 519 SGQALVIFQRKETAELVIRKLEDGCFLMSNGRPLVGRIALPFFPEKKPTFYGHLAIDHLR 578
SG+ALVIF + A+ + +L + C ++S R L G +P + +F GH +
Sbjct: 274 SGRALVIFGTTKAADSAMSRLNEDCLMLSGQRALTGSKNVPVEIGRCRSFTGHFNM---- 329
Query: 579 LQMQREMKDAVSTSHC 594
+ R + A S C
Sbjct: 330 --VDRSLMTAQKVSCC 343
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 122 GKCIVVCISKDNRNPQLSDEELQMADFVFSHCFDVGKCEISDKIDDKIAGVEVKNIFN 179
GKC VVC S D RNP+ +EL+ A ++FS FD IS+ D IAG+ V +FN
Sbjct: 2 GKCNVVCTSDDRRNPRPGTKELRRAKYIFSRTFDTRLRIISEDFADAIAGIGVDKLFN 59
>AT3G15605.2 | Symbols: | nucleic acid binding |
chr3:5288774-5290941 FORWARD LENGTH=397
Length = 397
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 103/196 (52%), Gaps = 19/196 (9%)
Query: 405 VEEVPSKKRKVDMKS--TKVSGDKPCKEASTIPQSVDHKLDSGVTKVTRRP----DRSKW 458
V PSKKRK+ + + T S D+ PQS + KL V + P ++ W
Sbjct: 161 VNAKPSKKRKLILNTPETDDSDDQG-------PQSGEKKLIKNPPLVEKAPSQNIEKKSW 213
Query: 459 FKAMPWEDKSKTAYEQRRVVLFENLDPSLTSSEVQDIISHGFKESCTAQMIPQTTYSSPH 518
+K +P+ED+ K A E+ RV+L ENL+PS TS EV+ + FKE A+MIP + SSPH
Sbjct: 214 YKKLPFEDELKPAIEKGRVLLIENLEPSYTSLEVEFLFRQAFKEGVDAKMIPSSPMSSPH 273
Query: 519 SGQALVIFQRKETAELVIRKLEDGCFLMSNGRPLVGRIALPFFPEKKPTFYGHLAIDHLR 578
SG+ALVIF + A+ + +L + C ++S R L G +P + +F GH +
Sbjct: 274 SGRALVIFGTTKAADSAMSRLNEDCLMLSGQRALTGSKNVPVEIGRCRSFTGHFNM---- 329
Query: 579 LQMQREMKDAVSTSHC 594
+ R + A S C
Sbjct: 330 --VDRSLMTAQKVSCC 343
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 122 GKCIVVCISKDNRNPQLSDEELQMADFVFSHCFDVGKCEISDKIDDKIAGVEVKNIFN 179
GKC VVC S D RNP+ +EL+ A ++FS FD IS+ D IAG+ V +FN
Sbjct: 2 GKCNVVCTSDDRRNPRPGTKELRRAKYIFSRTFDTRLRIISEDFADAIAGIGVDKLFN 59
>AT3G15605.1 | Symbols: | nucleic acid binding |
chr3:5288774-5290941 FORWARD LENGTH=399
Length = 399
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 103/198 (52%), Gaps = 21/198 (10%)
Query: 405 VEEVPSKKRKVDMKS--TKVSGDKPCKEASTIPQSVDHKLDSGVTKVTRRP----DRSKW 458
V PSKKRK+ + + T S D+ PQS + KL V + P ++ W
Sbjct: 161 VNAKPSKKRKLILNTPETDDSDDQG-------PQSGEKKLIKNPPLVEKAPSQNIEKKSW 213
Query: 459 FKAMPWEDKSKTAYEQRRVVLFENLDPSLTSSEVQDIISHGFKESCTAQMIPQTTYSSPH 518
+K +P+ED+ K A E+ RV+L ENL+PS TS EV+ + FKE A+MIP + SSPH
Sbjct: 214 YKKLPFEDELKPAIEKGRVLLIENLEPSYTSLEVEFLFRQAFKEGVDAKMIPSSPMSSPH 273
Query: 519 SG--QALVIFQRKETAELVIRKLEDGCFLMSNGRPLVGRIALPFFPEKKPTFYGHLAIDH 576
SG +ALVIF + A+ + +L + C ++S R L G +P + +F GH +
Sbjct: 274 SGICRALVIFGTTKAADSAMSRLNEDCLMLSGQRALTGSKNVPVEIGRCRSFTGHFNM-- 331
Query: 577 LRLQMQREMKDAVSTSHC 594
+ R + A S C
Sbjct: 332 ----VDRSLMTAQKVSCC 345
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 122 GKCIVVCISKDNRNPQLSDEELQMADFVFSHCFDVGKCEISDKIDDKIAGVEVKNIFN 179
GKC VVC S D RNP+ +EL+ A ++FS FD IS+ D IAG+ V +FN
Sbjct: 2 GKCNVVCTSDDRRNPRPGTKELRRAKYIFSRTFDTRLRIISEDFADAIAGIGVDKLFN 59