Miyakogusa Predicted Gene

Lj3g3v0180790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0180790.1 Non Chatacterized Hit- tr|B9FAR0|B9FAR0_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,48.91,4e-18,seg,NULL; LEA_2,Late embryogenesis abundant protein,
LEA-14,CUFF.40342.1
         (199 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52330.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...   169   1e-42
AT1G52330.2 | Symbols:  | Late embryogenesis abundant (LEA) hydr...   145   2e-35
AT4G13270.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...   139   1e-33

>AT1G52330.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr1:19488962-19489763 FORWARD LENGTH=214
          Length = 214

 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 113/171 (66%)

Query: 26  TRRRQVTCTAGILLFLTTAYIFWPTDPDXXXXXXXXXXXXXHRFPRVTVDISMILTLMVS 85
           +RRR +     I       YIFWP+DP              HR P  ++D+++++TL VS
Sbjct: 41  SRRRFIISIFLISFASILIYIFWPSDPRIKIIRVKISHVHVHRRPVPSIDMTLLVTLKVS 100

Query: 86  NAGVYSIDFGAVDVVVAYRGKALGHVTSEHGHVSARGSSHVDADVEFEGIGVVPDMVMLL 145
           NA VYS DF  +DV + YRGK LGHV+S+ GHV+A GSS++DA+ E +G+ V PD++ L+
Sbjct: 101 NADVYSFDFTDLDVTIDYRGKTLGHVSSDGGHVTAFGSSYLDAEAELDGVMVFPDVIHLI 160

Query: 146 EDVAKGMVPFDTVSEVRGQMGLLFLHFPMQAKQSCEILVSTLNHTIIRQHC 196
            D+AKG V FDTV+E  G++G+LF  FP++AK +C ILV T+N TI RQ C
Sbjct: 161 HDLAKGSVEFDTVTETNGKLGVLFFRFPLKAKVACGILVDTVNQTISRQSC 211


>AT1G52330.2 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr1:19488962-19489645 FORWARD LENGTH=227
          Length = 227

 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 99/153 (64%)

Query: 26  TRRRQVTCTAGILLFLTTAYIFWPTDPDXXXXXXXXXXXXXHRFPRVTVDISMILTLMVS 85
           +RRR +     I       YIFWP+DP              HR P  ++D+++++TL VS
Sbjct: 41  SRRRFIISIFLISFASILIYIFWPSDPRIKIIRVKISHVHVHRRPVPSIDMTLLVTLKVS 100

Query: 86  NAGVYSIDFGAVDVVVAYRGKALGHVTSEHGHVSARGSSHVDADVEFEGIGVVPDMVMLL 145
           NA VYS DF  +DV + YRGK LGHV+S+ GHV+A GSS++DA+ E +G+ V PD++ L+
Sbjct: 101 NADVYSFDFTDLDVTIDYRGKTLGHVSSDGGHVTAFGSSYLDAEAELDGVMVFPDVIHLI 160

Query: 146 EDVAKGMVPFDTVSEVRGQMGLLFLHFPMQAKQ 178
            D+AKG V FDTV+E  G++G+LF  FP++ + 
Sbjct: 161 HDLAKGSVEFDTVTETNGKLGVLFFRFPLKVRN 193


>AT4G13270.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr4:7731280-7732902 FORWARD LENGTH=215
          Length = 215

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 109/184 (59%)

Query: 16  RNHQNSVVFTTRRRQVTCTAGILLFLTTAYIFWPTDPDXXXXXXXXXXXXXHRFPRVTVD 75
           R H+   +    R  +  TA ILL     Y+ +P+DPD                 ++ +D
Sbjct: 32  RRHRRPSLLRNLRCSLLFTAVILLLSAAVYLLYPSDPDITVSRINLNHISVVDSHKIALD 91

Query: 76  ISMILTLMVSNAGVYSIDFGAVDVVVAYRGKALGHVTSEHGHVSARGSSHVDADVEFEGI 135
           +S  LT+ V N   +S+D+ ++ V + YRG+ LG V S+ GH+ AR SS++DA +E +G+
Sbjct: 92  LSFSLTIKVRNRDFFSLDYDSLVVSIGYRGRELGLVKSKGGHLKARDSSYIDATLELDGL 151

Query: 136 GVVPDMVMLLEDVAKGMVPFDTVSEVRGQMGLLFLHFPMQAKQSCEILVSTLNHTIIRQH 195
            VV D++ L+ D+AKG++PFDT+++V+G +G+L  + P+Q K SCE+ V+  N  I  Q 
Sbjct: 152 EVVHDVIYLIGDLAKGVIPFDTIAQVQGDLGVLLFNIPIQGKVSCEVYVNVNNQKISHQD 211

Query: 196 CLRE 199
           C R+
Sbjct: 212 CHRK 215