Miyakogusa Predicted Gene

Lj3g3v0160740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0160740.1 tr|G7II52|G7II52_MEDTR Regulator of telomere
elongation helicase OS=Medicago truncatula GN=MTR_2g102,71.28,0,no
description,Helicase-like, DEXD box c2 type; DEAD-like helicases
superfamily,Helicase, superfamil,CUFF.40337.1
         (479 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G79950.1 | Symbols:  | RAD3-like DNA-binding helicase protein...   551   e-157
AT1G20720.1 | Symbols:  | RAD3-like DNA-binding helicase protein...   157   2e-38
AT1G20750.1 | Symbols:  | RAD3-like DNA-binding helicase protein...   131   1e-30
AT1G79890.1 | Symbols:  | RAD3-like DNA-binding helicase protein...    97   3e-20
AT1G03190.2 | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding helic...    95   1e-19
AT1G03190.1 | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding helic...    95   1e-19
AT2G05635.1 | Symbols:  | DNA repair DEAD helicase RAD3/XP-D sub...    49   6e-06

>AT1G79950.1 | Symbols:  | RAD3-like DNA-binding helicase protein |
           chr1:30073580-30079537 FORWARD LENGTH=1040
          Length = 1040

 Score =  551 bits (1420), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 272/488 (55%), Positives = 338/488 (69%), Gaps = 37/488 (7%)

Query: 1   MPTYKIRGIDVDFPFDAYDSQLVYMDKVLQSLQQKRNALLESPTGTGKTLCLLCATLAWR 60
           MP Y IRGI+V+FPF+AY SQ++YMD+V++SLQ K +ALLESPTGTGKTLCLLCATLAWR
Sbjct: 46  MPNYSIRGINVEFPFEAYQSQIIYMDRVIESLQNKCHALLESPTGTGKTLCLLCATLAWR 105

Query: 61  KSLXXXXXXXXXXXXXXXXDKSDAGWKVTPPPSQ--------FPTIVYASRTHSQIRQVV 112
           KSL                  SD       P SQ        FPTIVYASRTHSQ+RQV+
Sbjct: 106 KSLGSFSTRKDRKNSAIPWSDSDE------PLSQSGGGGGGAFPTIVYASRTHSQLRQVI 159

Query: 113 RELKRTSYRPKMVVLGSREQLCIHDQVKSLQGKSQTNACRFLCR-RGKKAXXXXXXXXHV 171
           +ELKR+SYRPKMVVLGSREQLC++++V SL+GK+ TNAC++LC+ RGK+           
Sbjct: 160 KELKRSSYRPKMVVLGSREQLCVNEEVNSLRGKALTNACQYLCKKRGKR----------- 208

Query: 172 PENHKQRPTRNRCKHFGRVHGYLKNDPHVGEQPVDIEDLVNIGTSHGPCPYYLSKELHKV 231
                      +C HF R+  YLK++PH+G++PVDIEDLVNIG   GPCPYY+++ELHK 
Sbjct: 209 -----------QCNHFNRLPDYLKHNPHIGDEPVDIEDLVNIGKDSGPCPYYITRELHKD 257

Query: 232 VDIVFAPYNYLIDRGYRKSLHFSWKKSILIFDEAHNLESICADAASFDLTSSLLTTCISD 291
           VDI+FAPYNYLI  GYRK L  +W  S+LIFDEAHNLES+CAD+ASFDL S LL+ CIS+
Sbjct: 258 VDIIFAPYNYLISNGYRKFLKVNWTNSVLIFDEAHNLESLCADSASFDLPSVLLSACISE 317

Query: 292 AHRCIGLAKGRRDKSTDKPRNPDDFXXXXXXXXXXXXXXXXVPIESKELGYTKPGPYIYA 351
           A  C+ LA  RRD   D   NP++F                VPI  ++ G+TKPGPYIY 
Sbjct: 318 AQECVQLAAARRDSLNDVSINPENFAILKGLLLKLQELISKVPIPKRDEGFTKPGPYIYE 377

Query: 352 LLADLNIRHETASKLTDILEAASTLVEEDNQENSTGNICRLDSIREILDLVFRDGETTHA 411
           +L  LNI HETA KL   +E A+  +EE+ Q  +T    +L+ I ++L L+FR+  + HA
Sbjct: 378 MLKSLNITHETAPKLIGTVEEAAVFLEEEKQRTATNAGSKLEIIADMLKLIFRENGSNHA 437

Query: 412 KYYRVHVREVEARAANGSKGKVSRTLSWWCFNPGIAMEVFPKLGVGSIILTSGTLSPMES 471
             YRVHV+E+E  + +  KGKVSRTLSWWCF+PGI M    + GVGSIILTSGTLSPM+S
Sbjct: 438 DVYRVHVQELEQNSTDVMKGKVSRTLSWWCFSPGITMLDIAQKGVGSIILTSGTLSPMDS 497

Query: 472 FAQELKLD 479
            AQELKLD
Sbjct: 498 LAQELKLD 505


>AT1G20720.1 | Symbols:  | RAD3-like DNA-binding helicase protein |
           chr1:7185658-7192794 REVERSE LENGTH=1175
          Length = 1175

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 150/312 (48%), Gaps = 50/312 (16%)

Query: 4   YKIRGIDVDFPFDAYDSQLVYMDKVLQSLQQKR-----NALLESPTGTGKTLCLLCATLA 58
           Y+I G+ V+FP+  Y +QL +M +V+ +L + +     +ALLESPTGTGK+L LLC+ LA
Sbjct: 27  YQIGGLQVEFPYQPYGTQLAFMSRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSVLA 86

Query: 59  WRKS----LXXXXXXXXXXXXXXXXDKSDAGWKVTP-------PPS-------------- 93
           W+++    L                D  + G    P       P S              
Sbjct: 87  WQQNYKSRLLKGNLSHSKAAPEAATDPLNHGGGFIPETQPSDTPASTNVEKAETATKKRT 146

Query: 94  QFPTIVYASRTHSQIRQVVRELKRTSYRPKMVVLGSREQLCIHDQVKSLQGKSQTNACRF 153
           + PTI YASRTHSQI QV+RE ++T YR  M VL SR+  C +  V  L   +  + CR 
Sbjct: 147 KIPTIYYASRTHSQITQVIREYRKTGYRVPMAVLASRKHYCTNRHV--LGKDNVDDECRL 204

Query: 154 LCRRGKKAXXXXXXXXHVPENHKQRPTRNRCKHFGRVHGYLKNDPHVGEQPVDIEDLVNI 213
           L +                   K     +  K+  ++  +    P    +  DIEDLV +
Sbjct: 205 LLK------------------DKANIQCSEFKNVNKITSHPSLQPRGHNEVHDIEDLVKV 246

Query: 214 GTSHGPCPYYLSKELHKVVDIVFAPYNYLIDRGYRKSLHFSWKKSILIFDEAHNLESICA 273
           G +   CPY+ S  + +   +VF PY+Y+++   R  +    K +I+IFDEAHN+E I  
Sbjct: 247 GKNVRGCPYFASWSMAENAQLVFCPYSYIVNPVIRAGVEVDLKGAIIIFDEAHNMEDIAR 306

Query: 274 DAASFDLTSSLL 285
           +A S +L    L
Sbjct: 307 EAGSINLEEDTL 318


>AT1G20750.1 | Symbols:  | RAD3-like DNA-binding helicase protein |
           chr1:7203302-7208998 REVERSE LENGTH=1144
          Length = 1144

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 111/222 (50%), Gaps = 37/222 (16%)

Query: 4   YKIRGIDVDFPFDAYDSQLVYMDKVLQSLQQKR-----NALLESPTGTGKTLCLLCATLA 58
           Y+I G+ V+FP+  Y +QL +M +V+ +L + +     +ALLESPTGTGK+L LLC+ LA
Sbjct: 27  YQIGGLQVEFPYQPYGTQLAFMSRVISTLDRAQRDGHSHALLESPTGTGKSLSLLCSVLA 86

Query: 59  WRKSLXXXXXXXXXXXXXXXXDKSDAGWKVTPPPSQFPTIVYASRTHSQIRQVVRELKRT 118
           W+KS                         V P   Q PTI YASRTH+QI QV+RE ++T
Sbjct: 87  WQKSYKSRFPNGNLSHSKTQPSDIAGSSNVEPHEPQIPTIYYASRTHAQITQVIREYRKT 146

Query: 119 SYRPKMVVLGSREQLCIHDQVKSLQGKSQTNA-CRFLCRRGKKAXXXXXXXXHVPENHKQ 177
            YR  M VLGSR++ C +  V   QGK   +  CR L +  K                  
Sbjct: 147 GYRVPMTVLGSRKRYCTNSHV---QGKENVDEKCRLLLKDKKNI---------------- 187

Query: 178 RPTRNRCKHF---GRVHGY--LKNDPHVGEQPVDIEDLVNIG 214
                +C  F   GR+  Y  L+   H G    DIEDLV IG
Sbjct: 188 -----KCAEFNGVGRILAYPSLQQTGHNGVH--DIEDLVKIG 222



 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 13/132 (9%)

Query: 353 LADLNIRHETASKLTDILEAASTL-----VEEDNQENSTGNICRLDSIREILDLVF-RDG 406
           L + NI  E    L      A T      ++ D    S  ++  L+ +   L   F R+G
Sbjct: 316 LKEFNITRENFPNLKACFNQAITKSEAAEIDPDKPYLSGISVSTLEELFATLTYFFSRNG 375

Query: 407 ETTHAKYYRVHVREVEARAANGSKGKVSRTLSWWCFNPGIAMEVFPKLGVGSIILTSGTL 466
             +H   Y + ++    R  NG     + T S WC NP +  +    L + SIILTSGTL
Sbjct: 376 --SHVLDYEMGLQRSAKRGDNG----WTNTFSLWCMNPSVVFKDLADLSL-SIILTSGTL 428

Query: 467 SPMESFAQELKL 478
           SPM SF+ EL +
Sbjct: 429 SPMNSFSSELGM 440


>AT1G79890.1 | Symbols:  | RAD3-like DNA-binding helicase protein |
           chr1:30048655-30052203 FORWARD LENGTH=882
          Length = 882

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 9/194 (4%)

Query: 98  IVYASRTHSQIRQVVRELKRTSY--RPKMVVLGSREQLCIHDQVKSLQGKSQTNA-CRFL 154
           + + SRTHSQ+ Q V+EL++T +  + K+V LGSR+ LCI++ V  L   ++ N  C  L
Sbjct: 185 VFFCSRTHSQLSQFVKELRKTVFAKKLKVVCLGSRKNLCINEDVLKLGNVTRINERCLDL 244

Query: 155 CRRGKKAXXXXXXXXHVPENHKQRPTRNRCK-HFGRVHGYLKN--DPHVGEQPVDIEDLV 211
               KK         ++  N +   T+  C+    R H   +        ++ +DIEDLV
Sbjct: 245 ---QKKKISQVSKKKNLGANVRIVRTKASCRCPMLRKHKLQREFKAESFQQEAMDIEDLV 301

Query: 212 NIGTSHGPCPYYLSKELHKVVDIVFAPYNYLIDRGYRKSLHFSWKKSILIFDEAHNLESI 271
            +G     CPYY S+ +    D+V  PY  L+ +  R+SL  S K S++I DEAHNL   
Sbjct: 302 QLGREMRTCPYYGSRRMAPAADLVILPYQSLLSKSSRESLGLSLKNSVVIIDEAHNLADT 361

Query: 272 CADAASFDLTSSLL 285
                   LT S L
Sbjct: 362 LLSMHDAKLTVSQL 375


>AT1G03190.2 | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding helicase
           protein | chr1:775822-779863 FORWARD LENGTH=758
          Length = 758

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 150/327 (45%), Gaps = 68/327 (20%)

Query: 4   YKIRGIDVDFPFD-AYDSQLVYMDKVLQSLQQKRNALLESPTGTGKTLCLLCATLAWRKS 62
           +KI  + V FP+D  Y  Q  YM ++ ++L  K + LLE PTGTGKT+ LL    ++R S
Sbjct: 3   FKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYRLS 62

Query: 63  LXXXXXXXXXXXXXXXXDKSDAGWKVTPPPSQFPTIVYASRTHSQIRQVVRELK------ 116
                             + D+  K          +VY +RT  ++ + + ELK      
Sbjct: 63  ------------------RPDSPIK----------LVYCTRTVHEMEKTLGELKLLHDYQ 94

Query: 117 --RTSYRPKMVVLG--SREQLCIHDQVKSLQGKSQTNACRFLCRRGKKAXXXXXXXXHVP 172
                 + K++ LG  SR+ LC++ +V + + +   +A    CR+   +         V 
Sbjct: 95  VRHLGTQAKILALGLSSRKNLCVNTKVLAAENRDSVDAA---CRKRTAS--------WVR 143

Query: 173 ENHKQRPTRNRCKHFGRVHGYLKNDPHVGEQP--VDIEDLVNIGTSHGPCPYYLSKELHK 230
               + P    C  F     Y K   +    P    +EDL   G + G CPY+L++ + +
Sbjct: 144 ALSTENPNVELCDFF---ENYEKAAENALLPPGVYTLEDLRAFGKNRGWCPYFLARHMIQ 200

Query: 231 VVDIVFAPYNYLID---RGY-RKSLHFSWKKSILIFDEAHNLESICADAASFDLTSSLLT 286
             +++   Y YL+D    G+  K L    K+S+++FDEAHN++++C +A    L+ S+  
Sbjct: 201 FANVIVYSYQYLLDPKVAGFISKELQ---KESVVVFDEAHNIDNVCIEA----LSVSVRR 253

Query: 287 TCISDAHRCIGLAKGRRD--KSTDKPR 311
             +  A+R +   +   D  K+TD  R
Sbjct: 254 VTLEGANRNLNKIRQEIDRFKATDAGR 280


>AT1G03190.1 | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding helicase
           protein | chr1:775822-779863 FORWARD LENGTH=758
          Length = 758

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 150/327 (45%), Gaps = 68/327 (20%)

Query: 4   YKIRGIDVDFPFD-AYDSQLVYMDKVLQSLQQKRNALLESPTGTGKTLCLLCATLAWRKS 62
           +KI  + V FP+D  Y  Q  YM ++ ++L  K + LLE PTGTGKT+ LL    ++R S
Sbjct: 3   FKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYRLS 62

Query: 63  LXXXXXXXXXXXXXXXXDKSDAGWKVTPPPSQFPTIVYASRTHSQIRQVVRELK------ 116
                             + D+  K          +VY +RT  ++ + + ELK      
Sbjct: 63  ------------------RPDSPIK----------LVYCTRTVHEMEKTLGELKLLHDYQ 94

Query: 117 --RTSYRPKMVVLG--SREQLCIHDQVKSLQGKSQTNACRFLCRRGKKAXXXXXXXXHVP 172
                 + K++ LG  SR+ LC++ +V + + +   +A    CR+   +         V 
Sbjct: 95  VRHLGTQAKILALGLSSRKNLCVNTKVLAAENRDSVDAA---CRKRTAS--------WVR 143

Query: 173 ENHKQRPTRNRCKHFGRVHGYLKNDPHVGEQP--VDIEDLVNIGTSHGPCPYYLSKELHK 230
               + P    C  F     Y K   +    P    +EDL   G + G CPY+L++ + +
Sbjct: 144 ALSTENPNVELCDFF---ENYEKAAENALLPPGVYTLEDLRAFGKNRGWCPYFLARHMIQ 200

Query: 231 VVDIVFAPYNYLID---RGY-RKSLHFSWKKSILIFDEAHNLESICADAASFDLTSSLLT 286
             +++   Y YL+D    G+  K L    K+S+++FDEAHN++++C +A    L+ S+  
Sbjct: 201 FANVIVYSYQYLLDPKVAGFISKELQ---KESVVVFDEAHNIDNVCIEA----LSVSVRR 253

Query: 287 TCISDAHRCIGLAKGRRD--KSTDKPR 311
             +  A+R +   +   D  K+TD  R
Sbjct: 254 VTLEGANRNLNKIRQEIDRFKATDAGR 280


>AT2G05635.1 | Symbols:  | DNA repair DEAD helicase RAD3/XP-D
           subfamily protein | chr2:2089484-2090454 FORWARD
           LENGTH=146
          Length = 146

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 27/35 (77%)

Query: 93  SQFPTIVYASRTHSQIRQVVRELKRTSYRPKMVVL 127
           ++ PTI YASRTHSQI QV+RE ++T YR  M VL
Sbjct: 92  TKIPTIYYASRTHSQITQVIREYRKTGYRVPMAVL 126