Miyakogusa Predicted Gene

Lj3g3v0139580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0139580.1 tr|B6VCL2|B6VCL2_TRIUA Expressed protein
(Fragment) OS=Triticum urartu PE=4 SV=1,39.2,3e-18,CASC3/Barentsz
eIF4AIII binding,Btz domain; Btz,Btz domain; seg,NULL;
coiled-coil,NULL,CUFF.40328.1
         (569 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80000.2 | Symbols:  | CASC3/Barentsz eIF4AIII binding | chr1...   135   6e-32
AT1G80000.1 | Symbols:  | CASC3/Barentsz eIF4AIII binding | chr1...   135   6e-32
AT1G15280.1 | Symbols:  | CASC3/Barentsz eIF4AIII binding | chr1...    61   2e-09
AT1G15280.2 | Symbols:  | CASC3/Barentsz eIF4AIII binding | chr1...    55   2e-07

>AT1G80000.2 | Symbols:  | CASC3/Barentsz eIF4AIII binding |
           chr1:30093195-30096742 FORWARD LENGTH=605
          Length = 605

 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 144/416 (34%), Positives = 193/416 (46%), Gaps = 74/416 (17%)

Query: 149 PFSVPTAGAFYMHDDRFRDNAXXXXXXXXXXXXXLWESKDERKWGHDKFEEITFQDRPY- 207
           PF+VPTAGAFYMHDDRF++               LW+S+DERKWGHDKFEE+  Q + Y 
Sbjct: 131 PFAVPTAGAFYMHDDRFQE-LDAASNRRMRGGRRLWQSRDERKWGHDKFEEMNTQKQQYD 189

Query: 208 -KEGRRPSRGNFRGRGKTRGVARGGYVRGDRKSYDDRDNQNQXXXXXXXXXXXXXYEPTY 266
            +  R   RG  +GRG+ RG +RG     + K +    +QNQ             YE   
Sbjct: 190 RRTSRGRGRGRGQGRGQDRGQSRGN----NSKEFTGNGHQNQFPKAVTRGRGARRYEVAL 245

Query: 267 KNNDAAPQMQNRQSGKPVYKASNVSSGRAFTPISNSESDPVPAKKPVLASNLNYASPPFY 326
           +N + AP +Q +QS     + S+V  GR  T  +  E++ + AKK V AS+LN ASPPFY
Sbjct: 246 RNGNQAPSVQTKQSQNSSVEVSHVDLGRPPTETATLETEAIQAKKNVFASSLNSASPPFY 305

Query: 327 PSGSANKDTSLTPKRDVQTGSTSRNVHTGVMGEGFVAQQNNALHRGKNIVDSISMDKLHI 386
           PS S N       ++DVQ G                                  M +LHI
Sbjct: 306 PSRSNNN----LAQKDVQAG----------------------------------MGRLHI 327

Query: 387 DGSFRPSVGKPLNNLHMHPPGSSEV--RASQSTHPRASGRGGPIPVQMNYHPAASHNQVN 444
           + +  P+ GK   N       SS +  R +Q+T   + GRG P   Q+ Y    S NQ +
Sbjct: 328 NENPNPT-GKKFGNTK-----SSSLWGRTAQTT---SHGRGVPPHGQVLYQ--QSPNQGD 376

Query: 445 KITPSPTQYHAIQK------TSAPGRTSMQAPAPQLGHRPGSSSPPK-ASVANGSDAGEI 497
           K++ SP Q   + K      T  PG+   Q  A  +   P  SSPPK  S  N   +GEI
Sbjct: 377 KVS-SPMQIRGMPKGTDQSCTQLPGQVFNQHSA-VISLLP--SSPPKTGSSENPYLSGEI 432

Query: 498 DVASESGKSMGTLVGNERAVSQGNGRGSFIYXXXXXXX-XXXXXXXXDQNFPTFLP 552
           + A E+    G LV   +   Q +GRGSF+Y                + NFP FLP
Sbjct: 433 ESAVET----GALVAKGKGSLQPSGRGSFMYGGTQFMGPAGMAAGHGNPNFPAFLP 484


>AT1G80000.1 | Symbols:  | CASC3/Barentsz eIF4AIII binding |
           chr1:30093195-30096742 FORWARD LENGTH=605
          Length = 605

 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 144/416 (34%), Positives = 193/416 (46%), Gaps = 74/416 (17%)

Query: 149 PFSVPTAGAFYMHDDRFRDNAXXXXXXXXXXXXXLWESKDERKWGHDKFEEITFQDRPY- 207
           PF+VPTAGAFYMHDDRF++               LW+S+DERKWGHDKFEE+  Q + Y 
Sbjct: 131 PFAVPTAGAFYMHDDRFQE-LDAASNRRMRGGRRLWQSRDERKWGHDKFEEMNTQKQQYD 189

Query: 208 -KEGRRPSRGNFRGRGKTRGVARGGYVRGDRKSYDDRDNQNQXXXXXXXXXXXXXYEPTY 266
            +  R   RG  +GRG+ RG +RG     + K +    +QNQ             YE   
Sbjct: 190 RRTSRGRGRGRGQGRGQDRGQSRGN----NSKEFTGNGHQNQFPKAVTRGRGARRYEVAL 245

Query: 267 KNNDAAPQMQNRQSGKPVYKASNVSSGRAFTPISNSESDPVPAKKPVLASNLNYASPPFY 326
           +N + AP +Q +QS     + S+V  GR  T  +  E++ + AKK V AS+LN ASPPFY
Sbjct: 246 RNGNQAPSVQTKQSQNSSVEVSHVDLGRPPTETATLETEAIQAKKNVFASSLNSASPPFY 305

Query: 327 PSGSANKDTSLTPKRDVQTGSTSRNVHTGVMGEGFVAQQNNALHRGKNIVDSISMDKLHI 386
           PS S N       ++DVQ G                                  M +LHI
Sbjct: 306 PSRSNNN----LAQKDVQAG----------------------------------MGRLHI 327

Query: 387 DGSFRPSVGKPLNNLHMHPPGSSEV--RASQSTHPRASGRGGPIPVQMNYHPAASHNQVN 444
           + +  P+ GK   N       SS +  R +Q+T   + GRG P   Q+ Y    S NQ +
Sbjct: 328 NENPNPT-GKKFGNTK-----SSSLWGRTAQTT---SHGRGVPPHGQVLYQ--QSPNQGD 376

Query: 445 KITPSPTQYHAIQK------TSAPGRTSMQAPAPQLGHRPGSSSPPK-ASVANGSDAGEI 497
           K++ SP Q   + K      T  PG+   Q  A  +   P  SSPPK  S  N   +GEI
Sbjct: 377 KVS-SPMQIRGMPKGTDQSCTQLPGQVFNQHSA-VISLLP--SSPPKTGSSENPYLSGEI 432

Query: 498 DVASESGKSMGTLVGNERAVSQGNGRGSFIYXXXXXXX-XXXXXXXXDQNFPTFLP 552
           + A E+    G LV   +   Q +GRGSF+Y                + NFP FLP
Sbjct: 433 ESAVET----GALVAKGKGSLQPSGRGSFMYGGTQFMGPAGMAAGHGNPNFPAFLP 484


>AT1G15280.1 | Symbols:  | CASC3/Barentsz eIF4AIII binding |
           chr1:5252538-5256214 FORWARD LENGTH=584
          Length = 584

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 169/433 (39%), Gaps = 108/433 (24%)

Query: 151 SVPTAGAFYMHDDRFRDNAXXXXXXXXXXXXXLWESKDERKWGHDKFEEITFQDR----- 205
           +VPT GAFYMHDDRF++ +                S +ERKWGHDKFEE+   ++     
Sbjct: 110 AVPTGGAFYMHDDRFQEMSAGGNRRMRGGRRQW-GSGEERKWGHDKFEEMNTGEKHSDRM 168

Query: 206 --------------PYKEGRRPSRGNFRGRGKT----RGVARGGYVRGDRKSYDDRDNQN 247
                              R  S       G+     + V+RG   RG RKS     N+N
Sbjct: 169 SRGRFRGHGRGRGQGRGYARGSSSNTLTSSGQQIYVPKAVSRG---RGPRKSDTPLRNEN 225

Query: 248 QXXXXXXXXXXXXXYEPTYKNNDAAPQMQNRQ-SGKPVYKASNVSSGRAFTPISNSESDP 306
           Q                   +++ + Q++N   S     K  ++ S R+ T  + +E+  
Sbjct: 226 QA------------------HSEQSKQLRNSNGSQNSREKMPHLDSRRSPTAPAKTENQG 267

Query: 307 VPAKKPVLASNLNYASPPFYPSGSANKDTSLTPKRDVQTGSTSRNVHTGVMGEGFVAQQN 366
             AKK V  S+L+ ASPPFYPS                  + S NV  G+          
Sbjct: 268 AHAKKNVAVSSLSSASPPFYPS------------------APSSNVVHGIQ--------- 300

Query: 367 NALHRGKNIVDSISMDKLHIDGSFRPSVGKPLNNLHMHPPGSSEVRASQSTHPRASGRGG 426
                       +SM++LH + S  PS GK   N      G S V  +++    + GRG 
Sbjct: 301 ------------VSMERLHTNESVTPS-GKKYRNTKS---GYSPVWTAKTLQSTSQGRGA 344

Query: 427 PIPVQMNYHPAASHNQVNKITPSPTQYHAI-----QKTSAPGRTSMQAPAPQLGHRPGSS 481
           P      Y    SH+Q ++ + SP Q +       Q+ S  G     A    L     SS
Sbjct: 345 PAAGNTFY--PQSHSQGDRFS-SPMQLNGDSKGTGQRPSGQGFDQHSAVVRSL-----SS 396

Query: 482 SPPKASVA-NGSDAGEIDVASESGKSMGTLVGNERAVSQGNGRGSFIYXXXXXXXXXXXX 540
           SP K S++ N     EI+ +SE+      L+   +   +  G  SF+Y            
Sbjct: 397 SPQKTSLSRNRYPPDEIESSSET----AALIAKGKGTLRPGGSSSFMYSGSQMMGRPESL 452

Query: 541 XXXDQ-NFPTFLP 552
              D  NFPTFLP
Sbjct: 453 TSADNSNFPTFLP 465


>AT1G15280.2 | Symbols:  | CASC3/Barentsz eIF4AIII binding |
           chr1:5252538-5256214 FORWARD LENGTH=585
          Length = 585

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 151 SVPTAGAFYMHDDRFRDNAXXXXXXXXXXXXXLWESKDERKWGHDKFEEI 200
           +VPT GAFYMHDDRF++ +                S +ERKWGHDKFEE+
Sbjct: 110 AVPTGGAFYMHDDRFQEMSAGGNRRMRGGRRQW-GSGEERKWGHDKFEEM 158