Miyakogusa Predicted Gene

Lj3g3v0139480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0139480.1 tr|A9TSB0|A9TSB0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_96490
,38.96,4e-18,seg,NULL; OS01G0617700 PROTEIN,NULL; CENTROMERE PROTEIN
C,NULL,CUFF.40318.1
         (699 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15660.1 | Symbols: CENP-C | centromere protein C | chr1:5381...   136   5e-32

>AT1G15660.1 | Symbols: CENP-C | centromere protein C |
           chr1:5381230-5385057 FORWARD LENGTH=705
          Length = 705

 Score =  136 bits (342), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 135/429 (31%), Positives = 200/429 (46%), Gaps = 88/429 (20%)

Query: 18  DPLSNYRGLSLFPST----SSALPLSV-ADDLDAIHNHLRSMALRSPAKLVEQTKAILEE 72
           DPL  Y GLSLFP T    S+ LP S  ++DL   H  L+SM     ++  EQ KAILE+
Sbjct: 15  DPLQAYSGLSLFPRTLKSLSNPLPPSYQSEDLQQTHTLLQSMPFEIQSEHQEQAKAILED 74

Query: 73  NPGLFNSQDDERNXXXXXXXXXAEDGQDFP----RKRRPGLGLKRARFSLKPSTSVSLES 128
                                   D Q  P    R+RRPGL  KR  FSL  +TS     
Sbjct: 75  ---------------------VDVDVQLNPIPNKRERRPGLDRKRKSFSLHLTTS-QPPP 112

Query: 129 LLPNLDIENLKDPVEFFKAHERMENARREIQKQMGVSVEQNQDDVSTRPR--------QR 180
           + P+ D        +FF A+++ E A RE QKQ G SV   Q++  +R          +R
Sbjct: 113 VAPSFDPSKYPRSEDFFAAYDKFELANREWQKQTGSSVIDIQENPPSRRPRRPGIPGRKR 172

Query: 181 RPGLRGNDQRSIKYRHRYSTEI----SDKNDHAMASQEAFGSDSLDPDTEKIENGEACLT 236
           RP           +   Y T++    + + +  +AS+++  S +            A +T
Sbjct: 173 RPFKES-------FTDSYFTDVINLEASEKEIPIASEQSLESATA-----------AHVT 214

Query: 237 SLENEVTDSSATEGNKICEILDGLLRCNSEDLEGDGAMDLLQERLQIKPVVLEKVSVPDF 296
           +++ EV DS+      +  +L  LL C+ E+LEGDGA+ LL+ERLQIK   +EK S+P+F
Sbjct: 215 TVDREVDDSTVDTDKDLNNVLKDLLACSREELEGDGAIKLLEERLQIKSFNIEKFSIPEF 274

Query: 297 PDNQPIDLKSLRGSLSKPRKALSNIDNLLNRRKNKTPLRQDAGSPAEQLASPTPPRSPFA 356
            D + ++LK+  GS    RK+LS+I N+L +  N+  +R+++ SP+ Q            
Sbjct: 275 QDVRKMNLKA-SGSNPPNRKSLSDIQNIL-KGTNRVAVRKNSHSPSPQ------------ 320

Query: 357 PLSSLLNHISRLKPSVDPFSAHDIDHL-------STTKYSPVHK--MNQELNVVGSAKPS 407
                + H S   P VD FS  DI +L       S     P+ K   N     VG+   +
Sbjct: 321 ----TIKHFSSPNPPVDQFSFPDIHNLLPGDQQPSEVNVQPIAKDIPNTSPTNVGTVDVA 376

Query: 408 NELNDHITK 416
           +  ND + K
Sbjct: 377 SPFNDSVVK 385



 Score = 83.6 bits (205), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 613 KRLAKRQSLAAAXXXXXXXXXXXXXXXXXPLEYWKGERLVYGRIHQSLVTVLGVKCMSPG 672
           K  + R+SLAAA                 PLEYW+GER +YGRIH+SL TV+G+K  SPG
Sbjct: 617 KLFSCRKSLAAAGTKIEGGVRRSTRIKSRPLEYWRGERFLYGRIHESLTTVIGIKYASPG 676

Query: 673 SNGKPTM--KVKSFVQDKHKELFDLAS 697
              + +   KVKSFV D++K+L D A+
Sbjct: 677 EGKRDSRASKVKSFVSDEYKKLVDFAA 703