Miyakogusa Predicted Gene

Lj3g3v0139460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0139460.1 Non Chatacterized Hit- tr|G1P852|G1P852_MYOLU
Uncharacterized protein (Fragment) OS=Myotis
lucifugus,45.26,1e-18,breast cancer carboxy-terminal domain,BRCT
domain; SUBFAMILY NOT NAMED,NULL; DNA-REPAIR PROTEIN XRCC,CUFF.40314.1
         (389 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80420.3 | Symbols: ATXRCC1 | BRCT domain-containing DNA repa...   322   4e-88
AT1G80420.2 | Symbols: ATXRCC1 | BRCT domain-containing DNA repa...   322   4e-88
AT1G80420.1 | Symbols: ATXRCC1 | BRCT domain-containing DNA repa...   322   4e-88
AT1G80420.4 | Symbols: ATXRCC1 | BRCT domain-containing DNA repa...   307   7e-84

>AT1G80420.3 | Symbols: ATXRCC1 | BRCT domain-containing DNA repair
           protein | chr1:30235444-30237163 REVERSE LENGTH=353
          Length = 353

 Score =  322 bits (824), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 176/375 (46%), Positives = 229/375 (61%), Gaps = 33/375 (8%)

Query: 13  KRNLPSWLGTSGG--NEDESSANKPTLDDDGEKSSGTGSVTHKKSKVQTEXXXXXXXXXX 70
           KRNLPSW+ +        +S   KP  +   E+ +   + ++K    +            
Sbjct: 4   KRNLPSWMSSRDPEITPSKSHCKKPKDEGPTEEHNSRNAPSNKSEHAEP----------- 52

Query: 71  XXXXXXFNNLMEGVVFVLSGFVNPERGMLRSRAMEMGAEYKPDWNSECTLLICAFPNTPK 130
                 F+ LMEGVVFVLSGFVNPER  LRS+A+ MGA Y+PDWN+  TLLICAFPNTPK
Sbjct: 53  SSNTTEFSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTLLICAFPNTPK 112

Query: 131 FRQVEADCGTIVSKDWILECYTQKKLVEIESYLMHAGKPWRKGGRSQXXXXXXXXXXXXX 190
           FRQVE + GTI+SK+WI ECY QKKLV+IE YLMHAGKPWRK    Q             
Sbjct: 113 FRQVETNGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQDANREKREHLSKK 172

Query: 191 XAKHVERELPSKETASIKSKGKGT-NQARKCFEPSEVKKWAVDDLNKTIQWLESQEDKPD 249
             K VE++  ++ T S  SK +   N  ++ F  +EVKKWA DDL++TI WLESQE+KP+
Sbjct: 173 PEKQVEKKTETRGTPSTSSKNRSACNLVKEPFFVTEVKKWARDDLSQTISWLESQEEKPE 232

Query: 250 PSETTKIAAEGILTCLQDVICSLEEKKDIRKGTEDWKFLPRVVEELAKLDVVGNN-SASM 308
           P E  +IAAEG+LTCLQD I SLE+K+DI   TE W F+PRVV+EL K++      +++ 
Sbjct: 233 PGEIKRIAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVKELGKMESSSKKENSTA 292

Query: 309 SKEDLHRQALDCKRIYEVELNRSDHEWTKNSKKTEEQTSKTGRTNAMSSGGMEYDSDETI 368
           SKE++ +QA   K+IYE EL                  +K G   + S     YDSD T+
Sbjct: 293 SKEEVCKQAKSWKKIYEAEL------------------AKPGEDESTSRVACGYDSDMTV 334

Query: 369 EMTEQEIDLAYKTLS 383
           EMTE+EI+LAY+ +S
Sbjct: 335 EMTEEEIELAYRNVS 349


>AT1G80420.2 | Symbols: ATXRCC1 | BRCT domain-containing DNA repair
           protein | chr1:30235444-30237163 REVERSE LENGTH=353
          Length = 353

 Score =  322 bits (824), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 176/375 (46%), Positives = 229/375 (61%), Gaps = 33/375 (8%)

Query: 13  KRNLPSWLGTSGG--NEDESSANKPTLDDDGEKSSGTGSVTHKKSKVQTEXXXXXXXXXX 70
           KRNLPSW+ +        +S   KP  +   E+ +   + ++K    +            
Sbjct: 4   KRNLPSWMSSRDPEITPSKSHCKKPKDEGPTEEHNSRNAPSNKSEHAEP----------- 52

Query: 71  XXXXXXFNNLMEGVVFVLSGFVNPERGMLRSRAMEMGAEYKPDWNSECTLLICAFPNTPK 130
                 F+ LMEGVVFVLSGFVNPER  LRS+A+ MGA Y+PDWN+  TLLICAFPNTPK
Sbjct: 53  SSNTTEFSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTLLICAFPNTPK 112

Query: 131 FRQVEADCGTIVSKDWILECYTQKKLVEIESYLMHAGKPWRKGGRSQXXXXXXXXXXXXX 190
           FRQVE + GTI+SK+WI ECY QKKLV+IE YLMHAGKPWRK    Q             
Sbjct: 113 FRQVETNGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQDANREKREHLSKK 172

Query: 191 XAKHVERELPSKETASIKSKGKGT-NQARKCFEPSEVKKWAVDDLNKTIQWLESQEDKPD 249
             K VE++  ++ T S  SK +   N  ++ F  +EVKKWA DDL++TI WLESQE+KP+
Sbjct: 173 PEKQVEKKTETRGTPSTSSKNRSACNLVKEPFFVTEVKKWARDDLSQTISWLESQEEKPE 232

Query: 250 PSETTKIAAEGILTCLQDVICSLEEKKDIRKGTEDWKFLPRVVEELAKLDVVGNN-SASM 308
           P E  +IAAEG+LTCLQD I SLE+K+DI   TE W F+PRVV+EL K++      +++ 
Sbjct: 233 PGEIKRIAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVKELGKMESSSKKENSTA 292

Query: 309 SKEDLHRQALDCKRIYEVELNRSDHEWTKNSKKTEEQTSKTGRTNAMSSGGMEYDSDETI 368
           SKE++ +QA   K+IYE EL                  +K G   + S     YDSD T+
Sbjct: 293 SKEEVCKQAKSWKKIYEAEL------------------AKPGEDESTSRVACGYDSDMTV 334

Query: 369 EMTEQEIDLAYKTLS 383
           EMTE+EI+LAY+ +S
Sbjct: 335 EMTEEEIELAYRNVS 349


>AT1G80420.1 | Symbols: ATXRCC1 | BRCT domain-containing DNA repair
           protein | chr1:30235444-30237163 REVERSE LENGTH=353
          Length = 353

 Score =  322 bits (824), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 176/375 (46%), Positives = 229/375 (61%), Gaps = 33/375 (8%)

Query: 13  KRNLPSWLGTSGG--NEDESSANKPTLDDDGEKSSGTGSVTHKKSKVQTEXXXXXXXXXX 70
           KRNLPSW+ +        +S   KP  +   E+ +   + ++K    +            
Sbjct: 4   KRNLPSWMSSRDPEITPSKSHCKKPKDEGPTEEHNSRNAPSNKSEHAEP----------- 52

Query: 71  XXXXXXFNNLMEGVVFVLSGFVNPERGMLRSRAMEMGAEYKPDWNSECTLLICAFPNTPK 130
                 F+ LMEGVVFVLSGFVNPER  LRS+A+ MGA Y+PDWN+  TLLICAFPNTPK
Sbjct: 53  SSNTTEFSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTLLICAFPNTPK 112

Query: 131 FRQVEADCGTIVSKDWILECYTQKKLVEIESYLMHAGKPWRKGGRSQXXXXXXXXXXXXX 190
           FRQVE + GTI+SK+WI ECY QKKLV+IE YLMHAGKPWRK    Q             
Sbjct: 113 FRQVETNGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQDANREKREHLSKK 172

Query: 191 XAKHVERELPSKETASIKSKGKGT-NQARKCFEPSEVKKWAVDDLNKTIQWLESQEDKPD 249
             K VE++  ++ T S  SK +   N  ++ F  +EVKKWA DDL++TI WLESQE+KP+
Sbjct: 173 PEKQVEKKTETRGTPSTSSKNRSACNLVKEPFFVTEVKKWARDDLSQTISWLESQEEKPE 232

Query: 250 PSETTKIAAEGILTCLQDVICSLEEKKDIRKGTEDWKFLPRVVEELAKLDVVGNN-SASM 308
           P E  +IAAEG+LTCLQD I SLE+K+DI   TE W F+PRVV+EL K++      +++ 
Sbjct: 233 PGEIKRIAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVKELGKMESSSKKENSTA 292

Query: 309 SKEDLHRQALDCKRIYEVELNRSDHEWTKNSKKTEEQTSKTGRTNAMSSGGMEYDSDETI 368
           SKE++ +QA   K+IYE EL                  +K G   + S     YDSD T+
Sbjct: 293 SKEEVCKQAKSWKKIYEAEL------------------AKPGEDESTSRVACGYDSDMTV 334

Query: 369 EMTEQEIDLAYKTLS 383
           EMTE+EI+LAY+ +S
Sbjct: 335 EMTEEEIELAYRNVS 349


>AT1G80420.4 | Symbols: ATXRCC1 | BRCT domain-containing DNA repair
           protein | chr1:30235444-30237163 REVERSE LENGTH=341
          Length = 341

 Score =  307 bits (787), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 170/374 (45%), Positives = 221/374 (59%), Gaps = 43/374 (11%)

Query: 13  KRNLPSWLGTSGG--NEDESSANKPTLDDDGEKSSGTGSVTHKKSKVQTEXXXXXXXXXX 70
           KRNLPSW+ +        +S   KP  +   E+ +   + ++K    +            
Sbjct: 4   KRNLPSWMSSRDPEITPSKSHCKKPKDEGPTEEHNSRNAPSNKSEHAEP----------- 52

Query: 71  XXXXXXFNNLMEGVVFVLSGFVNPERGMLRSRAMEMGAEYKPDWNSECTLLICAFPNTPK 130
                 F+ LMEGVVFVLSGFVNPER  LRS+A+ MGA Y+PDWN+  TLLICAFPNTPK
Sbjct: 53  SSNTTEFSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTLLICAFPNTPK 112

Query: 131 FRQVEADCGTIVSKDWILECYTQKKLVEIESYLMHAGKPWRKGGRSQXXXXXXXXXXXXX 190
           FRQVE + GTI+SK+WI ECY QKKLV+IE YLMHAGKPWRK    Q             
Sbjct: 113 FRQVETNGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQDANREKSFSYCTA 172

Query: 191 XAKHVERELPSKETASIKSKGKGTNQARKCFEPSEVKKWAVDDLNKTIQWLESQEDKPDP 250
             + +           + S     N  ++ F  +EVKKWA DDL++TI WLESQE+KP+P
Sbjct: 173 SLRCL-----------VDSNRSACNLVKEPFFVTEVKKWARDDLSQTISWLESQEEKPEP 221

Query: 251 SETTKIAAEGILTCLQDVICSLEEKKDIRKGTEDWKFLPRVVEELAKLDVVGNN-SASMS 309
            E  +IAAEG+LTCLQD I SLE+K+DI   TE W F+PRVV+EL K++      +++ S
Sbjct: 222 GEIKRIAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVKELGKMESSSKKENSTAS 281

Query: 310 KEDLHRQALDCKRIYEVELNRSDHEWTKNSKKTEEQTSKTGRTNAMSSGGMEYDSDETIE 369
           KE++ +QA   K+IYE EL                  +K G   + S     YDSD T+E
Sbjct: 282 KEEVCKQAKSWKKIYEAEL------------------AKPGEDESTSRVACGYDSDMTVE 323

Query: 370 MTEQEIDLAYKTLS 383
           MTE+EI+LAY+ +S
Sbjct: 324 MTEEEIELAYRNVS 337