Miyakogusa Predicted Gene

Lj3g3v0129280.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0129280.1 tr|Q8S8M3|Q8S8M3_ARATH At2g38780 OS=Arabidopsis
thaliana GN=At2g38780 PE=2 SV=1,52.08,2e-19,
,NODE_59384_length_592_cov_28.959459.path1.1
         (98 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38780.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   100   3e-22

>AT2G38780.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
           growth stages; Has 58 Blast hits to 58 proteins in 23
           species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi -
           0; Plants - 44; Viruses - 0; Other Eukaryotes - 9
           (source: NCBI BLink). | chr2:16210864-16214110 FORWARD
           LENGTH=465
          Length = 465

 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 66/96 (68%), Gaps = 1/96 (1%)

Query: 1   MYEKLKSHPNAKVSKKARQFSYSFQAMEMMKFTAGSSSYSKNTYYQNYFDAFIENKSNYP 60
           MYEKL SHPN  VSKKARQF +SFQAMEM+K   GSS    NT YQ+YF+AF+E+K+NY 
Sbjct: 367 MYEKLISHPNPGVSKKARQFMFSFQAMEMLKVK-GSSFAEGNTGYQDYFEAFVEDKTNYK 425

Query: 61  LQDGVAQENAMNLQVLPYIIFMVSPIFVILLIALQK 96
            Q+    E     + L Y+I + SPI ++ ++A Q+
Sbjct: 426 AQEEKEGEEMGINETLLYVILLASPILMVFIVAAQR 461