Miyakogusa Predicted Gene

Lj3g3v0126190.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0126190.1 CUFF.40303.1
         (162 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08880.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    75   2e-14

>AT3G08880.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins
           in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18;
           Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes -
           52 (source: NCBI BLink). | chr3:2703169-2704165 FORWARD
           LENGTH=201
          Length = 201

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%)

Query: 1   MADSSRNVDVEELISYSDDLLKVLRDPRDLNGLFHCLQHXXXXXXXXXXXXXXARSLLQD 60
           M ++S N D+E+L+SY DDL+ +L      + +    +                +  ++D
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIED 60

Query: 61  YQKKIDAYKRKIEEAGSETVADAXXXXXXXXXXXXXXXXXXXXXXFRAIRDEFNDLEQQR 120
            + K+ A K+K EEA S+  A+                        R + DE  DL  Q 
Sbjct: 61  CKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELRLVADELKDLNAQL 120

Query: 121 MSIQEQKKALHKIEQDKLRTQMTLSMYASVTNIVPNLDDQS 161
            SI E K++  +  +D LR +  LSMYASVTN++P++DD S
Sbjct: 121 SSIDEHKQSTKRKVRDDLRAEKKLSMYASVTNVIPDIDDPS 161