Miyakogusa Predicted Gene

Lj3g3v0116130.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0116130.1 tr|A9RES0|A9RES0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_65167
,34.12,2e-18,BAH,Bromo adjacent homology (BAH) domain;
seg,NULL,CUFF.40296.1
         (270 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15605.4 | Symbols:  | nucleic acid binding | chr3:5288291-52...   143   9e-35
AT5G11470.1 | Symbols:  | bromo-adjacent homology (BAH) domain-c...   126   2e-29
AT3G15605.3 | Symbols:  | nucleic acid binding | chr3:5288774-52...    71   7e-13
AT3G15605.2 | Symbols:  | nucleic acid binding | chr3:5288774-52...    71   7e-13
AT3G15605.1 | Symbols:  | nucleic acid binding | chr3:5288774-52...    71   7e-13

>AT3G15605.4 | Symbols:  | nucleic acid binding |
           chr3:5288291-5290941 FORWARD LENGTH=481
          Length = 481

 Score =  143 bits (361), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 97/185 (52%), Gaps = 45/185 (24%)

Query: 3   LQSEQSGG-DLKDFKWGRKRGVGVKNKAIQFYESFVYEGVKYSLYDCAYFYDARHVETSI 61
           LQS  +GG D  DFKWG KRGVG K+  ++FYESF  EG++Y L+DCAYFY         
Sbjct: 2   LQSNSAGGEDNPDFKWGAKRGVGRKDNKVRFYESFTLEGIEYRLFDCAYFY--------- 52

Query: 62  GKLVRMYEGPSHNKMVKVVWFLRPGEIRNFMGHYRPSWDE-------GKGVSNLNYLGAI 114
                                        F+G Y P WDE        KGVSN+N +  I
Sbjct: 53  ----------------------------RFLGEYEPQWDELFLACGDEKGVSNINDVETI 84

Query: 115 IGKCNVVCTSKDRRNPEPSDTDLKKADYFFDHTFDVGKLELVDKFADKIDGIEVEHFFNR 174
           +GKCNVVCTS DRRNP P   +L++A Y F  TFD     + + FAD I GI V+  FN 
Sbjct: 85  MGKCNVVCTSDDRRNPRPGTKELRRAKYIFSRTFDTRLRIISEDFADAIAGIGVDKLFNM 144

Query: 175 KGDNE 179
           + D +
Sbjct: 145 RRDKQ 149


>AT5G11470.1 | Symbols:  | bromo-adjacent homology (BAH)
           domain-containing protein | chr5:3662757-3667041 REVERSE
           LENGTH=757
          Length = 757

 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 13/158 (8%)

Query: 30  IQFYESFVYEGVKYSLYDCAYFYDARHVETS---IGKLVRMYEGPSHN--KMVKVVWFLR 84
           +QFYESF Y+G +Y LYDC    +A   +++   IG +++++E  + +  K VK++WF +
Sbjct: 27  VQFYESFTYDGDEYRLYDCVLVGNASEPDSTEPFIGMIIKIWEHANKHIPKKVKLLWFFK 86

Query: 85  PGEIRNFM--------GHYRPSWDEGKGVSNLNYLGAIIGKCNVVCTSKDRRNPEPSDTD 136
           P EI  ++             +  EG G++N N L AI GKC+V+C SKD+RNP+PSD  
Sbjct: 87  PSEIAPYLEGVPNVLANEVFLASGEGLGLANTNQLEAIGGKCSVLCISKDKRNPQPSDEK 146

Query: 137 LKKADYFFDHTFDVGKLELVDKFADKIDGIEVEHFFNR 174
              AD+ F   FDVG  ++VD   DKI G++V+  FNR
Sbjct: 147 FNSADFVFCRAFDVGSCKVVDTIDDKIAGVDVKFIFNR 184


>AT3G15605.3 | Symbols:  | nucleic acid binding |
           chr3:5288774-5290941 FORWARD LENGTH=397
          Length = 397

 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 41/65 (63%)

Query: 115 IGKCNVVCTSKDRRNPEPSDTDLKKADYFFDHTFDVGKLELVDKFADKIDGIEVEHFFNR 174
           +GKCNVVCTS DRRNP P   +L++A Y F  TFD     + + FAD I GI V+  FN 
Sbjct: 1   MGKCNVVCTSDDRRNPRPGTKELRRAKYIFSRTFDTRLRIISEDFADAIAGIGVDKLFNM 60

Query: 175 KGDNE 179
           + D +
Sbjct: 61  RRDKQ 65


>AT3G15605.2 | Symbols:  | nucleic acid binding |
           chr3:5288774-5290941 FORWARD LENGTH=397
          Length = 397

 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 41/65 (63%)

Query: 115 IGKCNVVCTSKDRRNPEPSDTDLKKADYFFDHTFDVGKLELVDKFADKIDGIEVEHFFNR 174
           +GKCNVVCTS DRRNP P   +L++A Y F  TFD     + + FAD I GI V+  FN 
Sbjct: 1   MGKCNVVCTSDDRRNPRPGTKELRRAKYIFSRTFDTRLRIISEDFADAIAGIGVDKLFNM 60

Query: 175 KGDNE 179
           + D +
Sbjct: 61  RRDKQ 65


>AT3G15605.1 | Symbols:  | nucleic acid binding |
           chr3:5288774-5290941 FORWARD LENGTH=399
          Length = 399

 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 41/65 (63%)

Query: 115 IGKCNVVCTSKDRRNPEPSDTDLKKADYFFDHTFDVGKLELVDKFADKIDGIEVEHFFNR 174
           +GKCNVVCTS DRRNP P   +L++A Y F  TFD     + + FAD I GI V+  FN 
Sbjct: 1   MGKCNVVCTSDDRRNPRPGTKELRRAKYIFSRTFDTRLRIISEDFADAIAGIGVDKLFNM 60

Query: 175 KGDNE 179
           + D +
Sbjct: 61  RRDKQ 65