Miyakogusa Predicted Gene

Lj3g3v0115940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0115940.1 Non Chatacterized Hit- tr|D8S5W6|D8S5W6_SELML
Putative uncharacterized protein OS=Selaginella
moelle,44.74,2e-18,Q8LBW7_ARATH_Q8LBW7;,Cytochrome c oxidase, subunit
Vb; no description,Cytochrome c oxidase, subunit ,CUFF.40310.1
         (152 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80230.1 | Symbols:  | Rubredoxin-like superfamily protein | ...   178   1e-45
AT3G15640.2 | Symbols:  | Rubredoxin-like superfamily protein | ...   155   1e-38
AT3G15640.1 | Symbols:  | Rubredoxin-like superfamily protein | ...   154   2e-38
AT1G52710.1 | Symbols:  | Rubredoxin-like superfamily protein | ...   114   3e-26

>AT1G80230.1 | Symbols:  | Rubredoxin-like superfamily protein |
           chr1:30169784-30170999 REVERSE LENGTH=171
          Length = 171

 Score =  178 bits (452), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 93/158 (58%), Positives = 114/158 (72%), Gaps = 20/158 (12%)

Query: 1   MWRRLFTSPHLKSLSATLS-----------HSPHPGSALRFA-------VAARYVATQSA 42
           MWRR+ +S HLKS+SA  S            S H   + R +       + +R + + +A
Sbjct: 1   MWRRIVSS-HLKSISAVGSCAAPSCRHAVVESTHLSLSTRASSIPAYSSIFSRLIGSAAA 59

Query: 43  GS-IKKTVEDVVPIATGHEREEIQADLEGRDILEINHPEGPFGTKEAPAVVRSYFDRRIV 101
            + +KK VEDV+PIATGHE+EE+QA+LEGR + +I+ PEGPFGTKEAPAVV+SY+D RIV
Sbjct: 60  DTAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRIV 119

Query: 102 GCPGGEGEDEHDVVWFWLEKGKPHECPVCAQYFVLEVV 139
           GCPGGEGEDEHDVVWFWLEKGK  ECPVC QYF LEVV
Sbjct: 120 GCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVV 157


>AT3G15640.2 | Symbols:  | Rubredoxin-like superfamily protein |
           chr3:5299273-5301371 FORWARD LENGTH=175
          Length = 175

 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/158 (56%), Positives = 113/158 (71%), Gaps = 20/158 (12%)

Query: 1   MWRRLFTSPHLKSLSA-TLSHSPHPG------------SALRFAVAA------RYVATQS 41
           MWRR+ +S  LK+L+A  ++ SP               +A R A++A      R  ++ S
Sbjct: 1   MWRRIVSS-QLKTLAADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFSSDS 59

Query: 42  AGSIKKTVEDVVPIATGHEREEIQADLEGRDILEINHPEGPFGTKEAPAVVRSYFDRRIV 101
                K VEDV+PIATGHE+EE++A+LEGR + +I+ PEGPFGTKEAPA+V+SY+D+RIV
Sbjct: 60  ETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRIV 119

Query: 102 GCPGGEGEDEHDVVWFWLEKGKPHECPVCAQYFVLEVV 139
           GCPGGEGEDEHDVVWFWLEKGK  ECPVC QYF LEVV
Sbjct: 120 GCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVV 157


>AT3G15640.1 | Symbols:  | Rubredoxin-like superfamily protein |
           chr3:5299273-5301371 FORWARD LENGTH=176
          Length = 176

 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/159 (55%), Positives = 109/159 (68%), Gaps = 21/159 (13%)

Query: 1   MWRRLFTSPHLKSLSA-TLSHSPHPG-------------------SALRFAVAARYVATQ 40
           MWRR+ +S  LK+L+A  ++ SP                      SA  F +  R+ +  
Sbjct: 1   MWRRIVSS-QLKTLAADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFSSDS 59

Query: 41  SAGSIKKTVEDVVPIATGHEREEIQADLEGRDILEINHPEGPFGTKEAPAVVRSYFDRRI 100
                 K VEDV+PIATGHE+EE++A+LEGR + +I+ PEGPFGTKEAPA+V+SY+D+RI
Sbjct: 60  VETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRI 119

Query: 101 VGCPGGEGEDEHDVVWFWLEKGKPHECPVCAQYFVLEVV 139
           VGCPGGEGEDEHDVVWFWLEKGK  ECPVC QYF LEVV
Sbjct: 120 VGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVV 158


>AT1G52710.1 | Symbols:  | Rubredoxin-like superfamily protein |
           chr1:19638627-19640112 REVERSE LENGTH=90
          Length = 90

 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 60/71 (84%)

Query: 64  IQADLEGRDILEINHPEGPFGTKEAPAVVRSYFDRRIVGCPGGEGEDEHDVVWFWLEKGK 123
           +  +  GR +L+I+HPE PFGTKE+PAVV+SYFD+R +GC GGEGED HDVVWFWL+KGK
Sbjct: 4   LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63

Query: 124 PHECPVCAQYF 134
             ECPVC+QYF
Sbjct: 64  SFECPVCSQYF 74