Miyakogusa Predicted Gene

Lj3g3v0095850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0095850.1 tr|E6NU95|E6NU95_9ROSI JHL06B08.6 protein
OS=Jatropha curcas GN=JHL06B08.6 PE=4 SV=1,93.91,0,domain present in
cyclins, TFIIB and Retinob,Cyclin-like; TFIIB,Transcription factor
TFIIB, conserve,CUFF.40277.1
         (312 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10330.1 | Symbols:  | Cyclin-like family protein | chr3:3199...   584   e-167
AT2G41630.1 | Symbols: TFIIB | transcription factor IIB | chr2:1...   538   e-153
AT3G29380.1 | Symbols:  | Cyclin-like family protein | chr3:1128...   244   8e-65
AT3G57370.1 | Symbols:  | Cyclin family protein | chr3:21226839-...   168   5e-42
AT4G10680.1 | Symbols:  | transcription factor IIB (TFIIB) famil...    96   3e-20
AT4G36650.1 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-relat...    93   2e-19
AT4G36650.2 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-relat...    81   8e-16
AT5G39230.1 | Symbols:  | TFIIB zinc-binding protein | chr5:1570...    51   8e-07

>AT3G10330.1 | Symbols:  | Cyclin-like family protein |
           chr3:3199907-3201642 FORWARD LENGTH=312
          Length = 312

 Score =  584 bits (1506), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 279/312 (89%), Positives = 290/312 (92%)

Query: 1   MPDTFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANEAGDNDPVRVG 60
           M D FCSDCKR TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE+GDNDPVRVG
Sbjct: 1   MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPSNPLLTDGGLSTVIAKTNGSSGEFLSASLGRWQNRGSNPDRGLIMAFKTIATMSDRLG 120
           GP+NPLL DGGL+TVI+K NGSSG+FLS+SLGRWQNRGSNPDRGLI+AFKTIATM+DRLG
Sbjct: 61  GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEF 240
           KEIGRAKEYIVKQLGLE GQ VEMGTIHAGDFMRRFCSNLGM N            SEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEF 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWY 300
           DIRRSPISIAAAVIYIITQLSD+KKPL+DISVATGVAEGTIRNSYKDLYPH+SKIIP WY
Sbjct: 241 DIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWY 300

Query: 301 AKEEDLKNLCSP 312
           AKEEDLKNL SP
Sbjct: 301 AKEEDLKNLQSP 312


>AT2G41630.1 | Symbols: TFIIB | transcription factor IIB |
           chr2:17355555-17357400 REVERSE LENGTH=312
          Length = 312

 Score =  538 bits (1385), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 254/312 (81%), Positives = 278/312 (89%)

Query: 1   MPDTFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANEAGDNDPVRVG 60
           M D +C+DCK++TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANE+ ++DP RVG
Sbjct: 1   MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60

Query: 61  GPSNPLLTDGGLSTVIAKTNGSSGEFLSASLGRWQNRGSNPDRGLIMAFKTIATMSDRLG 120
           GP+NPLL D  L+TVIAK NGSSG+FLS+SLGRWQNR SN DRGLI AFKTIATMS+RLG
Sbjct: 61  GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANE+YKR+EDQKSSRGRNQDAL AACLYIACRQEDKPRT+KEIC +ANGATK
Sbjct: 121 LVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATK 180

Query: 181 KEIGRAKEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEF 240
           KEIGRAK+YIVK LGLE GQSV++GTIHAGDFMRRFCSNL M+N            SEEF
Sbjct: 181 KEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEF 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWY 300
           DIRRSPISIAA VIYIITQLSDDKK LKDIS ATGVAEGTIRNSYKDLYPH+SKI P+WY
Sbjct: 241 DIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWY 300

Query: 301 AKEEDLKNLCSP 312
           AKEEDLKNL SP
Sbjct: 301 AKEEDLKNLSSP 312


>AT3G29380.1 | Symbols:  | Cyclin-like family protein |
           chr3:11282407-11283524 REVERSE LENGTH=336
          Length = 336

 Score =  244 bits (622), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 137/320 (42%), Positives = 192/320 (60%), Gaps = 16/320 (5%)

Query: 1   MPDTFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--AGDNDPVR 58
           M +  C DCKR T +V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++    D DP R
Sbjct: 1   MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60

Query: 59  VGGPSNPLLTDGGLSTVIAKTNGSSGEFLS----ASLGRWQNRGSNPDRGLI-MAFKTIA 113
           VG  +NP L  G L T+I K   ++   LS    ++L R  N+  N +  LI  AF+ I 
Sbjct: 61  VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120

Query: 114 TMSDRLGLVATIKDRANEIYKRVE---DQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
            M+D L L   I  RA EI  + +   + K  RG+  +A+ AA +  ACR+    RT+KE
Sbjct: 121 RMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKE 180

Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLENGQ---SVEMGTIHAGDFMRRFCSNLGMNNXXX 227
           I  VANG  KK+I   KE +V +  LE+ Q   S     I+ G+ +RRFCS L ++    
Sbjct: 181 IAEVANGVDKKDIR--KESLVIKRVLESHQTSVSASQAIINTGELVRRFCSKLDISQREI 238

Query: 228 XXXXXXXXXSEEFDIRRSPISIAAAVIYIITQLSD-DKKPLKDISVATGVAEGTIRNSYK 286
                    +E FDIRR+P S+ AA+I++I+ +S  ++KP+++I +   V E TI+NS K
Sbjct: 239 MAIPEAVEKAENFDIRRNPKSVLAAIIFMISHISQTNRKPIREIGIVAEVVENTIKNSVK 298

Query: 287 DLYPHVSKIIPNWYAKEEDL 306
           D+YP+  KIIPNWYA E D+
Sbjct: 299 DMYPYALKIIPNWYACESDI 318


>AT3G57370.1 | Symbols:  | Cyclin family protein |
           chr3:21226839-21228475 REVERSE LENGTH=360
          Length = 360

 Score =  168 bits (425), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 174/367 (47%), Gaps = 75/367 (20%)

Query: 6   CSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANEAGDNDPVRVGGPSNP 65
           C  CK Q  VV DH    T C  CGL  +   I + S          +ND VR+  P+N 
Sbjct: 9   CRRCK-QINVVTDHVTRRTRCFGCGLEFKYRPIGDLSP-------VAENDTVRLPDPTNT 60

Query: 66  LLTDGGLSTVIAK--------------------------------TNGSSGEFLS----- 88
           LL++  LS V  +                                 NGSS +FLS     
Sbjct: 61  LLSNTDLSIVTTEHKNGSFDDSLSLNLGNSSKPRLDPVSIATAKLMNGSSNDFLSLGTSQ 120

Query: 89  --------------ASLGRWQN--------RGSNPDRGLIMAFKTIATMSDRLGLVATIK 126
                         + LG  Q           + P++ L +   +I  +S+ L L ATIK
Sbjct: 121 NSETITASSDEFLFSDLGHLQKFSFDPLSMASTKPNKALSIV--SIEAISNGLKLPATIK 178

Query: 127 DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186
            +ANEI+K VE    +RG+ ++ L AAC+YIACR  D  RT++EI   AN A+  +I   
Sbjct: 179 GQANEIFKVVESY--ARGKERNVLFAACIYIACRDNDMTRTMREISRFANKASISDISET 236

Query: 187 KEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEF-DIRRS 245
             +I ++L +     +   +I   +F++RFCS   ++              +   + RR+
Sbjct: 237 VGFIAEKLEINKNWYM---SIETANFIKRFCSIFRLDKEAVEAALEAAESYDYMTNGRRA 293

Query: 246 PISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEED 305
           P+S+AA ++Y+I +LS +K  LK +  ATGVAE TI+ +Y DLYP++  I+P W+A   D
Sbjct: 294 PVSVAAGIVYVIARLSYEKHLLKGLIEATGVAENTIKGTYGDLYPNLPTIVPTWFANAND 353

Query: 306 LKNLCSP 312
           LKNL +P
Sbjct: 354 LKNLGAP 360


>AT4G10680.1 | Symbols:  | transcription factor IIB (TFIIB) family
           protein | chr4:6587521-6588069 FORWARD LENGTH=182
          Length = 182

 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 102/196 (52%), Gaps = 26/196 (13%)

Query: 3   DTFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANEAGDNDPVRVGGP 62
           D  C +CKR TE V ++  GDT+C ECG V+E++ ID+                   G  
Sbjct: 4   DGICLECKRPTETVVNYKNGDTICIECGHVIENNIIDDLD-----------------GAS 46

Query: 63  SNPLLTDGGLSTVIAKTNGSSGEFLSASLGRWQN---RGSNPDRGLIMAFKTIATMSDRL 119
           +NP L  G L T+I K +G S   L++ L R QN   +    +  + +A+  I  M++ L
Sbjct: 47  TNPNLKSGHLPTIIFKLSGKSSS-LASKLRRTQNEMIKNKQEEDVIKIAYAEIERMTEAL 105

Query: 120 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
           GL   I + A +I  +++ +    G++   L AA +  ACRQ + P+T+KEI +VAN   
Sbjct: 106 GLTFGISNTACKILSKLDKKNLRGGKSLRGLCAASVSRACRQVNIPKTLKEISAVAN-VD 164

Query: 180 KKEIGRAKEYIVKQLG 195
            KEI +A    VK LG
Sbjct: 165 MKEINKA----VKLLG 176


>AT4G36650.1 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-related
           protein | chr4:17283283-17285527 REVERSE LENGTH=503
          Length = 503

 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 7/197 (3%)

Query: 106 IMAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKP 165
           + A+  I  ++  LGL   I + A ++++        R R+ +AL  ACL  A R+  +P
Sbjct: 131 LRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATACLVQAIREAQEP 190

Query: 166 RTVKEICSVANGATKKEIGRAKEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMNNX 225
           RT++EI S+A    +KEIG+  + + + L L    +    ++H    M RFC+ L +N  
Sbjct: 191 RTLQEI-SIAANVQQKEIGKYIKILGEALQLSQPINSNSISVH----MPRFCTLLQLNKS 245

Query: 226 XXXXXXX--XXXXSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 283
                        ++ F  RR+PISI+AA IY+  QL D +K   +I   TG+ E T+R 
Sbjct: 246 AQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITGLTEVTLRK 305

Query: 284 SYKDLYPHVSKIIPNWY 300
            YK+L  +   ++P+ Y
Sbjct: 306 VYKELLENWDDLLPSNY 322


>AT4G36650.2 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-related
           protein | chr4:17283600-17285527 REVERSE LENGTH=369
          Length = 369

 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 106 IMAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKP 165
           + A+  I  ++  LGL   I + A ++++        R R+ +AL  ACL  A R+  +P
Sbjct: 131 LRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATACLVQAIREAQEP 190

Query: 166 RTVKEICSVANGATKKEIGRAKEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMNNX 225
           RT++EI S+A    +KEIG+  + + + L L    +    ++H    M RFC+ L +N  
Sbjct: 191 RTLQEI-SIAANVQQKEIGKYIKILGEALQLSQPINSNSISVH----MPRFCTLLQLNKS 245

Query: 226 XXXXXXX--XXXXSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAE 278
                        ++ F  RR+PISI+AA IY+  QL D +K   +I   TG+ E
Sbjct: 246 AQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITGLTE 300


>AT5G39230.1 | Symbols:  | TFIIB zinc-binding protein |
          chr5:15709474-15709925 FORWARD LENGTH=119
          Length = 119

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 28/33 (84%)

Query: 6  CSDCKRQTEVVFDHSAGDTVCSECGLVLESHSI 38
          C DCK++T+ V D+ +GDT+C+ECGL+L+SH I
Sbjct: 6  CLDCKKRTDTVIDYRSGDTICTECGLILDSHYI 38