Miyakogusa Predicted Gene

Lj3g3v0075800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0075800.1 Non Chatacterized Hit- tr|C6T923|C6T923_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.19335
PE,85.13,0,seg,NULL; JAB,JAB1/Mov34/MPN/PAD-1; JAB1/MPN domain,NULL;
BRCA1/BRCA2-CONTAINING COMPLEX SUBUNIT 3,N,CUFF.40278.1
         (432 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80210.1 | Symbols: BRCC36A, AtBRCC36A | Mov34/MPN/PAD-1 fami...   499   e-141
AT3G06820.2 | Symbols: BRCC36B, AtBRCC36B | Mov34/MPN/PAD-1 fami...   491   e-139
AT1G80210.2 | Symbols: BRCC36A, AtBRCC36A | Mov34/MPN/PAD-1 fami...   480   e-135
AT3G06820.1 | Symbols: BRCC36B, AtBRCC36B | Mov34/MPN/PAD-1 fami...   353   1e-97
AT1G22920.2 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |...    52   1e-06
AT1G22920.1 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |...    52   1e-06
AT1G71230.1 | Symbols: CSN5B, CSN5, AJH2 | COP9-signalosome 5B |...    51   1e-06

>AT1G80210.1 | Symbols: BRCC36A, AtBRCC36A | Mov34/MPN/PAD-1 family
           protein | chr1:30163357-30165628 REVERSE LENGTH=406
          Length = 406

 Score =  499 bits (1286), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/400 (62%), Positives = 298/400 (74%), Gaps = 7/400 (1%)

Query: 1   MSLTSVKMSEEVWLTCVTHALSTETEEIMGLLLGDIQHSKNG-SVTALIWGASPQTRSDR 59
           MSLT V MSE+VWLTC+THALSTETEEIMGLLLGDI++SK+G S TA+IWGASPQ+RSDR
Sbjct: 1   MSLTCVNMSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKDGGSATAMIWGASPQSRSDR 60

Query: 60  RKDRVETNPEQLAAASALADRMTATTGRTTRVIGWYHSHPHITVLPSHVDVRTQGMYQLL 119
           +KDRVETNPEQLAAASA ADRMT +TGRTTRVIGWYHSHPHITVLPSHVDVRTQ MYQLL
Sbjct: 61  QKDRVETNPEQLAAASAQADRMTISTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLL 120

Query: 120 DSGFIGLIFSCYSEDANKVGRIQVIAFQSSDGKQNHMSRPIPLSPVNRXXXXXXXXXXXX 179
           DSGFIGLIFSC+SEDANKVGRIQVIAFQSSDGK N + + + L   N+            
Sbjct: 121 DSGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKPNSIPKSMSLVLANKDSVIDLESSFSS 180

Query: 180 XXXXXXXXGYFKAESPDQDTXXXXXXXXXXXXXXXXXLGNFFA-NADASYLGGEKGGGNY 238
                      + ++P+ DT                    FF  N +A+    +   GNY
Sbjct: 181 SDSIYQRSSSARGDNPELDTSDTATTSGSKGGGRVSDFEAFFVNNTEANNTRRDGTSGNY 240

Query: 239 LLNNSDSKEIDIDPMDMSESMQEAMHRSNLDMSGAEYVRREIPLYVLPSLSLINLDSPLA 298
                 S  I+ID MDMSESMQEAMHRSNL+ SG  YVR+E+PL+VLP+ SL+ L+SPLA
Sbjct: 241 -----SSTAIEIDSMDMSESMQEAMHRSNLETSGVGYVRKEVPLHVLPTSSLLQLNSPLA 295

Query: 299 SYMDLQHVIFEEERTAYNQAISQNMRDEKVHPLTFIHHTSTYQASLCKLIEYCLSPAITA 358
           S+  LQ V++EEER AY+Q++ Q+ RD +VHPL FIH+TSTYQAS+CKLIEYCLSPAI A
Sbjct: 296 SFKSLQRVLYEEERAAYHQSVQQSKRDGRVHPLAFIHNTSTYQASMCKLIEYCLSPAINA 355

Query: 359 LQDRLRENEVRLAIMSEEAKSLEAEAYRGSEASLSSPRRV 398
           LQDRL+EN++RLA++ +EA+ LEA+  +G+E S  + R V
Sbjct: 356 LQDRLKENKIRLAMLMDEAEVLEAQKLKGAETSGGASRLV 395


>AT3G06820.2 | Symbols: BRCC36B, AtBRCC36B | Mov34/MPN/PAD-1 family
           protein | chr3:2151027-2153264 REVERSE LENGTH=405
          Length = 405

 Score =  491 bits (1263), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 252/404 (62%), Positives = 294/404 (72%), Gaps = 10/404 (2%)

Query: 1   MSLTSVKMSEEVWLTCVTHALSTETEEIMGLLLGDIQHSKNG-SVTALIWGASPQTRSDR 59
           MSLT V MSE+VWLTC+THALSTETEEIMGLLLGDI++SKNG S TA+IWGASPQ RSDR
Sbjct: 1   MSLTCVNMSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKNGESATAMIWGASPQPRSDR 60

Query: 60  RKDRVETNPEQLAAASALADRMTATTGRTTRVIGWYHSHPHITVLPSHVDVRTQGMYQLL 119
           +KDRVETNPEQLAAASA ADRMT +TGRTTRVIGWYHSHPHITVLPSHVDVRTQ MYQLL
Sbjct: 61  QKDRVETNPEQLAAASAQADRMTISTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLL 120

Query: 120 DSGFIGLIFSCYSEDANKVGRIQVIAFQSSDGKQNHMSRPIPLSPVNRXXXXXXXXXXXX 179
           DSGFIGLIFSC+SEDANKVGRIQVIAFQSSDGK N + + + L   N+            
Sbjct: 121 DSGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKPNSIPKSMSLVLANKDSVIDIESSSSS 180

Query: 180 XXXXXXXXGYFKAESPDQDTXXXXXXXXXXXXXXXXXLGNFFANADASYLGGEKGGGNYL 239
                      K   P+ DT                  G FF N   + + G      + 
Sbjct: 181 SDSIYQRSSSSK---PELDTIDTATTSGSKGGGRVSDFGPFFTNNIEANITGRD--ETHK 235

Query: 240 LNNSDSKEIDIDPMDMSESMQEAMHRSNLDMSGAEYVRREIPLYVLPSLSLINLDSPLAS 299
             N  S  I ID MDMSESMQEAM RSNLD SGA YVR+E+PL+VLP+ SL+ ++SPLAS
Sbjct: 236 SGNLSSTTIGIDSMDMSESMQEAMLRSNLDTSGAGYVRKEVPLHVLPTSSLLPVNSPLAS 295

Query: 300 YMDLQHVIFEEERTAYNQAISQNMRDEKVHPLTFIHHTSTYQASLCKLIEYCLSPAITAL 359
           +  LQ V++EEER AY Q++ QNMRD +VHPL FIH+TSTYQAS+CKLIEYCLSPAI AL
Sbjct: 296 FKSLQRVLYEEERAAYYQSVQQNMRDGRVHPLAFIHNTSTYQASMCKLIEYCLSPAINAL 355

Query: 360 QDRLRENEVRLAIMSEEAKSLEAEAYRGSEASLSSPRRVASPVH 403
           QDR +EN++RLA++ +EA+ LEA+  +G+E S    RR +  VH
Sbjct: 356 QDRQKENKIRLAMLMDEAEVLEAQKLKGAETS----RRPSHLVH 395


>AT1G80210.2 | Symbols: BRCC36A, AtBRCC36A | Mov34/MPN/PAD-1 family
           protein | chr1:30163546-30165628 REVERSE LENGTH=371
          Length = 371

 Score =  480 bits (1235), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/376 (63%), Positives = 281/376 (74%), Gaps = 7/376 (1%)

Query: 1   MSLTSVKMSEEVWLTCVTHALSTETEEIMGLLLGDIQHSKNG-SVTALIWGASPQTRSDR 59
           MSLT V MSE+VWLTC+THALSTETEEIMGLLLGDI++SK+G S TA+IWGASPQ+RSDR
Sbjct: 1   MSLTCVNMSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKDGGSATAMIWGASPQSRSDR 60

Query: 60  RKDRVETNPEQLAAASALADRMTATTGRTTRVIGWYHSHPHITVLPSHVDVRTQGMYQLL 119
           +KDRVETNPEQLAAASA ADRMT +TGRTTRVIGWYHSHPHITVLPSHVDVRTQ MYQLL
Sbjct: 61  QKDRVETNPEQLAAASAQADRMTISTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLL 120

Query: 120 DSGFIGLIFSCYSEDANKVGRIQVIAFQSSDGKQNHMSRPIPLSPVNRXXXXXXXXXXXX 179
           DSGFIGLIFSC+SEDANKVGRIQVIAFQSSDGK N + + + L   N+            
Sbjct: 121 DSGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKPNSIPKSMSLVLANKDSVIDLESSFSS 180

Query: 180 XXXXXXXXGYFKAESPDQDTXXXXXXXXXXXXXXXXXLGNFFA-NADASYLGGEKGGGNY 238
                      + ++P+ DT                    FF  N +A+    +   GNY
Sbjct: 181 SDSIYQRSSSARGDNPELDTSDTATTSGSKGGGRVSDFEAFFVNNTEANNTRRDGTSGNY 240

Query: 239 LLNNSDSKEIDIDPMDMSESMQEAMHRSNLDMSGAEYVRREIPLYVLPSLSLINLDSPLA 298
                 S  I+ID MDMSESMQEAMHRSNL+ SG  YVR+E+PL+VLP+ SL+ L+SPLA
Sbjct: 241 -----SSTAIEIDSMDMSESMQEAMHRSNLETSGVGYVRKEVPLHVLPTSSLLQLNSPLA 295

Query: 299 SYMDLQHVIFEEERTAYNQAISQNMRDEKVHPLTFIHHTSTYQASLCKLIEYCLSPAITA 358
           S+  LQ V++EEER AY+Q++ Q+ RD +VHPL FIH+TSTYQAS+CKLIEYCLSPAI A
Sbjct: 296 SFKSLQRVLYEEERAAYHQSVQQSKRDGRVHPLAFIHNTSTYQASMCKLIEYCLSPAINA 355

Query: 359 LQDRLRENEVRLAIMS 374
           LQDRL+EN++R+ + S
Sbjct: 356 LQDRLKENKIRVCVSS 371


>AT3G06820.1 | Symbols: BRCC36B, AtBRCC36B | Mov34/MPN/PAD-1 family
           protein | chr3:2151027-2152659 REVERSE LENGTH=324
          Length = 324

 Score =  353 bits (906), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 183/323 (56%), Positives = 219/323 (67%), Gaps = 9/323 (2%)

Query: 81  MTATTGRTTRVIGWYHSHPHITVLPSHVDVRTQGMYQLLDSGFIGLIFSCYSEDANKVGR 140
           MT +TGRTTRVIGWYHSHPHITVLPSHVDVRTQ MYQLLDSGFIGLIFSC+SEDANKVGR
Sbjct: 1   MTISTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCFSEDANKVGR 60

Query: 141 IQVIAFQSSDGKQNHMSRPIPLSPVNRXXXXXXXXXXXXXXXXXXXXGYFKAESPDQDTX 200
           IQVIAFQSSDGK N + + + L   N+                       K   P+ DT 
Sbjct: 61  IQVIAFQSSDGKPNSIPKSMSLVLANKDSVIDIESSSSSSDSIYQRSSSSK---PELDTI 117

Query: 201 XXXXXXXXXXXXXXXXLGNFFANADASYLGGEKGGGNYLLNNSDSKEIDIDPMDMSESMQ 260
                            G FF N   + + G      +   N  S  I ID MDMSESMQ
Sbjct: 118 DTATTSGSKGGGRVSDFGPFFTNNIEANITGRDE--THKSGNLSSTTIGIDSMDMSESMQ 175

Query: 261 EAMHRSNLDMSGAEYVRREIPLYVLPSLSLINLDSPLASYMDLQHVIFEEERTAYNQAIS 320
           EAM RSNLD SGA YVR+E+PL+VLP+ SL+ ++SPLAS+  LQ V++EEER AY Q++ 
Sbjct: 176 EAMLRSNLDTSGAGYVRKEVPLHVLPTSSLLPVNSPLASFKSLQRVLYEEERAAYYQSVQ 235

Query: 321 QNMRDEKVHPLTFIHHTSTYQASLCKLIEYCLSPAITALQDRLRENEVRLAIMSEEAKSL 380
           QNMRD +VHPL FIH+TSTYQAS+CKLIEYCLSPAI ALQDR +EN++RLA++ +EA+ L
Sbjct: 236 QNMRDGRVHPLAFIHNTSTYQASMCKLIEYCLSPAINALQDRQKENKIRLAMLMDEAEVL 295

Query: 381 EAEAYRGSEASLSSPRRVASPVH 403
           EA+  +G+E S    RR +  VH
Sbjct: 296 EAQKLKGAETS----RRPSHLVH 314


>AT1G22920.2 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |
           chr1:8109998-8111895 REVERSE LENGTH=351
          Length = 351

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 23/170 (13%)

Query: 6   VKMSEEVWLTCVTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASP----QTRSDRRK 61
           V +S    L  V HA S  T EIMGL+ G    ++  ++  +   A P    +TR + + 
Sbjct: 59  VHISALALLKMVVHARSGGTIEIMGLMQGK---TEGDTIIVMDAFALPVEGTETRVNAQS 115

Query: 62  DRVETNPEQLAAASALADRMTATTGRTTRVIGWYHSHPHITVLPSHVDVRTQGMYQLLDS 121
           D  E   E  +  S LA       GR   V+GWYHSHP      S +DV TQ + Q    
Sbjct: 116 DAYEYMVE-YSQTSKLA-------GRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQE 167

Query: 122 GFIGLIFSCYSEDANKVGRIQVIAFQS-SDGKQ---NHMS--RPIPLSPV 165
            F+ ++           G++++ AF++  +G +   +H+S  + IPL+ +
Sbjct: 168 PFLAVVID--PTRTVSAGKVEIGAFRTYPEGHKISDDHVSEYQTIPLNKI 215


>AT1G22920.1 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |
           chr1:8109882-8111895 REVERSE LENGTH=357
          Length = 357

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 23/170 (13%)

Query: 6   VKMSEEVWLTCVTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASP----QTRSDRRK 61
           V +S    L  V HA S  T EIMGL+ G    ++  ++  +   A P    +TR + + 
Sbjct: 59  VHISALALLKMVVHARSGGTIEIMGLMQG---KTEGDTIIVMDAFALPVEGTETRVNAQS 115

Query: 62  DRVETNPEQLAAASALADRMTATTGRTTRVIGWYHSHPHITVLPSHVDVRTQGMYQLLDS 121
           D  E   E  +  S LA       GR   V+GWYHSHP      S +DV TQ + Q    
Sbjct: 116 DAYEYMVE-YSQTSKLA-------GRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQE 167

Query: 122 GFIGLIFSCYSEDANKVGRIQVIAFQS-SDGKQ---NHMS--RPIPLSPV 165
            F+ ++           G++++ AF++  +G +   +H+S  + IPL+ +
Sbjct: 168 PFLAVVID--PTRTVSAGKVEIGAFRTYPEGHKISDDHVSEYQTIPLNKI 215


>AT1G71230.1 | Symbols: CSN5B, CSN5, AJH2 | COP9-signalosome 5B |
           chr1:26852560-26854255 FORWARD LENGTH=358
          Length = 358

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 9/143 (6%)

Query: 6   VKMSEEVWLTCVTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVE 65
           VK+S    L  V HA S  T EIMGL+ G    +   ++  +   A P   ++ R +  +
Sbjct: 59  VKISALALLKMVVHARSGGTIEIMGLMQG---KTDGDTIIVMDAFALPVEGTETRVNAQD 115

Query: 66  TNPEQLAAASALADRMTATTGRTTRVIGWYHSHPHITVLPSHVDVRTQGMYQLLDSGFIG 125
              E +   S    +     GR   V+GWYHSHP      S +DV TQ + Q     F+ 
Sbjct: 116 DAYEYMVEYS----QTNKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLA 171

Query: 126 LIFSCYSEDANKVGRIQVIAFQS 148
           ++           G++++ AF++
Sbjct: 172 VVID--PTRTVSAGKVEIGAFRT 192