Miyakogusa Predicted Gene

Lj3g3v0075760.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0075760.1 tr|Q1YXI2|Q1YXI2_PHOPR Hypothetical aspartate
racemase OS=Photobacterium profundum 3TCK
GN=P3TCK_008,29.75,0.00000000000001,seg,NULL;
Asp_Glu_race,Asp/Glu/hydantoin racemase; no description,Asp/Glu
racemase; Aspartate/glutam,CUFF.40271.1
         (240 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15410.1 | Symbols:  | aspartate-glutamate racemase family | ...   163   7e-41

>AT1G15410.1 | Symbols:  | aspartate-glutamate racemase family |
           chr1:5299577-5300681 FORWARD LENGTH=330
          Length = 330

 Score =  163 bits (413), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 138/244 (56%), Gaps = 16/244 (6%)

Query: 5   MLTMSLSNPSQ--TSLCFVTNPCPRYLCKPRLWQLQATPPSSIILNADESGKFSRNLHGS 62
           M     +NPS     LC+ +    R  C+ RL ++ A PPSS++L+ DES    +   G 
Sbjct: 1   MYLQIFNNPSHGLAHLCYSS----RVSCRVRLSRVLAMPPSSVLLHMDESNDLPKPKKGF 56

Query: 63  NLV-SGKGEESGAP---FLTQXXXXXXXXXXXXDATLNFISKLVELSSEDGRRTSSNIPF 118
            L    +   +  P    L Q            D+TL F+ KLV+ SS DG+   S++PF
Sbjct: 57  CLSEDSRNSLNSLPADSLLRQANTVGIIGGVSTDSTLKFVKKLVDWSSNDGK---SSLPF 113

Query: 119 VLCSDPVLNKELLSYERSCF--VASKGESLKPDCYSQIVQSLRSKRAFLENSGAGCIVMP 176
           VLCSDP LNKELL YE + +  +  + ES   D    IV++LR+KR +LE  GA  I+MP
Sbjct: 114 VLCSDPALNKELLLYEENSYPSLYHREESTPVDP-KLIVENLRNKRRYLERCGAKLILMP 172

Query: 177 CNVSHSWYEQVSKGCSVTFLHMAECVXXXXXXXXXXXXXXGSPLRIGVLATNATLAAGFY 236
           C+++H WYE+V +G  V  LHM EC+              G+PLR+GV+AT+ATL+AGFY
Sbjct: 173 CHIAHIWYEEVCEGSLVPLLHMGECIAKELQEAKMKPLEAGNPLRVGVMATSATLSAGFY 232

Query: 237 KEKL 240
           +EKL
Sbjct: 233 QEKL 236