Miyakogusa Predicted Gene

Lj3g3v0075590.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0075590.3 Non Chatacterized Hit- tr|J3L103|J3L103_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G2,65.52,0.00000000000004,Pep_deformylase,Formylmethionine
deformylase; seg,NULL; PEPTIDE DEFORMYLASE,Formylmethionine
deformy,CUFF.40265.3
         (275 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15390.1 | Symbols: PDF1A, ATDEF1 | peptide deformylase 1A | ...   288   2e-78
AT5G14660.2 | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylase...    92   4e-19
AT5G14660.1 | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylase...    92   4e-19

>AT1G15390.1 | Symbols: PDF1A, ATDEF1 | peptide deformylase 1A |
           chr1:5294653-5295625 FORWARD LENGTH=269
          Length = 269

 Score =  288 bits (738), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 142/219 (64%), Positives = 170/219 (77%), Gaps = 20/219 (9%)

Query: 64  KAGWFSGL-------TLPKVVKAGDPVLHQPAREVDPSEMKSEKVQKIIDDMIRVMRNAP 116
           KAGW  GL        LP++V +GDPVLH+ AREVDP E+ SE++QKIIDDMI+VMR AP
Sbjct: 64  KAGWLLGLGEKKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAP 123

Query: 117 GVGLAAPQIGLPFRIIVLEDKKEYMGYDTKGEIKPQEIKAQVEAEIKAQDRRPFDLLVIL 176
           GVGLAAPQIG+P RIIVLED KEY+ Y       P+E       EI AQ+RR FDL+V++
Sbjct: 124 GVGLAAPQIGVPLRIIVLEDTKEYISY------APKE-------EILAQERRHFDLMVMV 170

Query: 177 NPKLEKKSNRTALFFEGCLSVSGYSAVVERYLDVEVTGFDRDGEPIKIKASGWQARILQH 236
           NP L+++SN+ ALFFEGCLSV G+ A VERYL+V VTG+DR G+ I++ ASGWQARILQH
Sbjct: 171 NPVLKERSNKKALFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQH 230

Query: 237 ECDHLDGTLYVDKMLPNTFRTSRNWDMPLAPGCPKLGPR 275
           ECDHLDG LYVDKM+P TFRT  N D+PLA GCPKLGP+
Sbjct: 231 ECDHLDGNLYVDKMVPRTFRTVDNLDLPLAEGCPKLGPQ 269


>AT5G14660.2 | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylase 1B
           | chr5:4727129-4728671 REVERSE LENGTH=273
          Length = 273

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 92/185 (49%), Gaps = 30/185 (16%)

Query: 75  KVVKAGDPVLHQPAREVDPSEMKSEKVQKIIDDMIRVMRNAPGVGLAAPQIGLPFRIIVL 134
           K+V+  DP+L    + +D   +  E ++ ++D M  VM    G+GL+APQ+GL  +++V 
Sbjct: 82  KIVEYPDPILRAKNKRID---IFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMV- 137

Query: 135 EDKKEYMGYDTKGEIKPQEIKAQVEAEIKAQDRRPFDLLVILNPKLEKKSNRTALFFEGC 194
                   ++  GE  P E K                 +V++NPK++K S++   F EGC
Sbjct: 138 --------FNPAGE--PGEGKE----------------IVLVNPKIKKYSDKLVPFDEGC 171

Query: 195 LSVSGYSAVVERYLDVEVTGFDRDGEPIKIKASGWQARILQHECDHLDGTLYVDKMLPNT 254
           LS  G  A V R   V++   D  GE   I  S   ARI QHE DHL+G L+ D+M    
Sbjct: 172 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQV 231

Query: 255 FRTSR 259
             + R
Sbjct: 232 LDSIR 236


>AT5G14660.1 | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylase 1B
           | chr5:4727129-4728671 REVERSE LENGTH=273
          Length = 273

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 92/185 (49%), Gaps = 30/185 (16%)

Query: 75  KVVKAGDPVLHQPAREVDPSEMKSEKVQKIIDDMIRVMRNAPGVGLAAPQIGLPFRIIVL 134
           K+V+  DP+L    + +D   +  E ++ ++D M  VM    G+GL+APQ+GL  +++V 
Sbjct: 82  KIVEYPDPILRAKNKRID---IFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMV- 137

Query: 135 EDKKEYMGYDTKGEIKPQEIKAQVEAEIKAQDRRPFDLLVILNPKLEKKSNRTALFFEGC 194
                   ++  GE  P E K                 +V++NPK++K S++   F EGC
Sbjct: 138 --------FNPAGE--PGEGKE----------------IVLVNPKIKKYSDKLVPFDEGC 171

Query: 195 LSVSGYSAVVERYLDVEVTGFDRDGEPIKIKASGWQARILQHECDHLDGTLYVDKMLPNT 254
           LS  G  A V R   V++   D  GE   I  S   ARI QHE DHL+G L+ D+M    
Sbjct: 172 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQV 231

Query: 255 FRTSR 259
             + R
Sbjct: 232 LDSIR 236