Miyakogusa Predicted Gene

Lj3g3v0044220.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0044220.1 Non Chatacterized Hit- tr|I3SGC8|I3SGC8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.77,0,Thioredoxin-like,Thioredoxin-like fold;
Complex1_24kDa,Thioredoxin-like 2Fe-2S ferredoxin; NADH
DEHY,CUFF.40269.1
         (163 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02580.1 | Symbols:  | NADH-ubiquinone oxidoreductase 24 kDa ...   310   3e-85

>AT4G02580.1 | Symbols:  | NADH-ubiquinone oxidoreductase 24 kDa
           subunit, putative | chr4:1134586-1136906 FORWARD
           LENGTH=255
          Length = 255

 Score =  310 bits (794), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 146/163 (89%), Positives = 155/163 (95%)

Query: 1   MNEVARIIEVAPIRVYEVATFYSMFNRAKVGKYHLLVCGTTPCMIRGSREIEEALLNHLG 60
           MN VA++IEVAPIRVYEVATFYSMFNRAKVGKYHLLVCGTTPCMIRGSR+IE ALL+HLG
Sbjct: 93  MNAVAKVIEVAPIRVYEVATFYSMFNRAKVGKYHLLVCGTTPCMIRGSRDIESALLDHLG 152

Query: 61  VKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVELVEM 120
           VKR EVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNY+EDVTP++VVE+VE 
Sbjct: 153 VKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEK 212

Query: 121 LRKGEKPPPGTQNPQRIKCGPEGGNTTLLGEPKPPPCRDLDAC 163
           LRKGEKPP GTQNP+RIKCGPEGGN TLLGEPKPP  RDLDAC
Sbjct: 213 LRKGEKPPHGTQNPKRIKCGPEGGNKTLLGEPKPPQFRDLDAC 255