Miyakogusa Predicted Gene
- Lj3g3v0044100.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0044100.2 Non Chatacterized Hit- tr|Q6MCF0|Q6MCF0_PARUW
Putative uncharacterized protein OS=Protochlamydia
amo,36.08,7e-19,RNI-like,NULL; Leucine-rich repeat - CC
(cysteine-containin,Leucine-rich repeat,
cysteine-containing,CUFF.40232.2
(273 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G15740.1 | Symbols: | Leucine-rich repeat family protein | c... 314 3e-86
AT4G23840.1 | Symbols: | Leucine-rich repeat (LRR) family prote... 78 6e-15
AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein | c... 50 1e-06
AT5G27920.1 | Symbols: | F-box family protein | chr5:9942063-99... 50 1e-06
>AT1G15740.1 | Symbols: | Leucine-rich repeat family protein |
chr1:5411509-5414544 FORWARD LENGTH=585
Length = 585
Score = 314 bits (805), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 162/270 (60%), Positives = 197/270 (72%), Gaps = 3/270 (1%)
Query: 1 MHNYNTFSSLPRDLTQQIFNTLVYTCCLTPVSFQAFRDCSLEDLYLGEYAGAVVNDGWMD 60
+ Y FS LPRD++QQIF+ LVY+ LT S +AFRDC+++DLYLGEY G VND WMD
Sbjct: 74 IDRYTKFSDLPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPG--VNDDWMD 131
Query: 61 VISSQGLSLLHVDLSGTDFTDQGLACLRDCKNTISLNLNYCHQISDCGLEYISGLSNLES 120
VISSQ SLL VD SG+D TD GL L+ C N SLN N+C QIS+ GL ++SGLSNL S
Sbjct: 132 VISSQSTSLLSVDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTS 191
Query: 121 LSFRRNAAISAQGLSNISGLSNLVKLDLERCPRIHGGIAHLQGLSKLESLNMNCCNCLTD 180
LSFRRNAAI+AQG+ +S L NL KLDLE+CP I GG+ HL+ L+KLESLN+ CNC+TD
Sbjct: 192 LSFRRNAAITAQGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITD 251
Query: 181 VDMKPLSDLTNLKRLEISCNKVTDFGISFXXXXXXXXXXXXEGCL-VTAECLDSLAELPA 239
DM+PLS LTNL+ L+I C+K+TD GIS+ EGC VTA CLD+L L
Sbjct: 252 ADMEPLSVLTNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAG 311
Query: 240 LSYLNLSRCNLSNNGCENFSRLENLNVLNL 269
L YLNL+RCN S++GCE FS L NL +LNL
Sbjct: 312 LMYLNLNRCNFSDSGCEKFSDLINLKILNL 341
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 3/191 (1%)
Query: 69 LLHVDLSGTDFTDQGLACLRDCKNTISLNLNYCHQISDCGLEYISGLSNLESLSFRRNAA 128
L++++L+ +F+D G D N LNL + I++ L ++ GL+ LESL+ +
Sbjct: 312 LMYLNLNRCNFSDSGCEKFSDLINLKILNLGM-NNITNSCLVHLKGLTKLESLNL-DSCR 369
Query: 129 ISAQGLSNISGLSNLVKLDLERCPRIHGGIAHLQGLSKLESLNMNCCNCLTDVDMKPLSD 188
I +GL ++SG+ L L+L G+ HL GLS LES+N++ +TD ++ LS
Sbjct: 370 IGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLS-FTVVTDSGLRKLSG 428
Query: 189 LTNLKRLEISCNKVTDFGISFXXXXXXXXXXXXEGCLVTAECLDSLAELPALSYLNLSRC 248
LT+L+ L + VTD G+S G +T + L L L L +
Sbjct: 429 LTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGG 488
Query: 249 NLSNNGCENFS 259
L++ G +N
Sbjct: 489 GLTDTGVKNIK 499
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 107/264 (40%), Gaps = 56/264 (21%)
Query: 61 VISSQGLSLL-------HVDLSGTDFTDQGLACLRDCKNTISLNLNYCH----------- 102
I++QG+ L +DL D GL LR SLN+ +C+
Sbjct: 199 AITAQGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLS 258
Query: 103 -------------QISDCGLEYISGLSNLESLSFRRNAAISAQGLSNISGLSNLVKLDLE 149
+I+D G+ Y+ GL+ L L+ ++A L ++ L+ L+ L+L
Sbjct: 259 VLTNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLN 318
Query: 150 RCPRIHGG------------------------IAHLQGLSKLESLNMNCCNCLTDVDMKP 185
RC G + HL+GL+KLESLN++ C + D +
Sbjct: 319 RCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCR-IGDEGLVH 377
Query: 186 LSDLTNLKRLEISCNKVTDFGISFXXXXXXXXXXXXEGCLVTAECLDSLAELPALSYLNL 245
LS + LK LE+S +V G+ +VT L L+ L +L LNL
Sbjct: 378 LSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNL 437
Query: 246 SRCNLSNNGCENFSRLENLNVLNL 269
++++ G + L L L+L
Sbjct: 438 DARHVTDAGLSALTSLTGLTHLDL 461
>AT4G23840.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr4:12400379-12403190 FORWARD LENGTH=597
Length = 597
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 1/154 (0%)
Query: 117 NLESLSFRRNAAISAQGLSNISGLSNLVKLDLERCPRIHGG-IAHLQGLSKLESLNMNCC 175
++E++ R ++++A+ ++ I G NL+ L+L C RI+ + + GL+ L L+++ C
Sbjct: 62 SVENIDLRGKSSVNAEWMAYIGGFVNLITLNLSDCQRINSSTLWPITGLTSLTELDLSRC 121
Query: 176 NCLTDVDMKPLSDLTNLKRLEISCNKVTDFGISFXXXXXXXXXXXXEGCLVTAECLDSLA 235
+TD MK L + NLK+L IS VT+ GIS G VT + L SL
Sbjct: 122 FKVTDAGMKHLQSVVNLKKLWISQTGVTEVGISLLASLKKLSLLDLGGLPVTDQNLISLQ 181
Query: 236 ELPALSYLNLSRCNLSNNGCENFSRLENLNVLNL 269
L L YL++ N++N G + + NL+ LNL
Sbjct: 182 ALTKLEYLDIWGSNVTNQGAVSILKFSNLSFLNL 215
>AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein |
chr4:8845927-8848701 FORWARD LENGTH=610
Length = 610
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 58 WMDVISSQGL--------SLLHVDLSGTDFTDQGLACL-RDCKNTISLNLNYCHQISDCG 108
W +SS GL SL +DL G DQGLA + + CK LNL +C ++D G
Sbjct: 149 WCPNVSSVGLCSLAQKCTSLKSLDLQGCYVGDQGLAAVGKFCKQLEELNLRFCEGLTDVG 208
Query: 109 -LEYISGLSN-LESLSFRRNAAISAQGLSNISGLSNLVKLDLERCPRIH--GGIAHLQGL 164
++ + G S L+S+ +A I+ L + L+++ IH G IA QG
Sbjct: 209 VIDLVVGCSKSLKSIGVAASAKITDLSLEAVGSHCKLLEVLYLDSEYIHDKGLIAVAQGC 268
Query: 165 SKLESLNMNCCNCLTDVDMKPLSDL-TNLKRLEI-SCNKVTDFGI 207
+L++L + C + +TDV + +L T+L+RL + S TD G+
Sbjct: 269 HRLKNLKLQCVS-VTDVAFAAVGELCTSLERLALYSFQHFTDKGM 312
>AT5G27920.1 | Symbols: | F-box family protein |
chr5:9942063-9944507 REVERSE LENGTH=642
Length = 642
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 54 VNDGWMDVISSQGLSLLHVDLSG-TDFTDQGLACL-RDCKNTISLNLNYCHQISDCGLEY 111
++D + I S+ LL +DL F D GLA L R CK+ L L+YC +++D G+E
Sbjct: 441 ISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAALSRGCKSLNRLILSYCCELTDTGVEQ 500
Query: 112 ISGLSNLESLSFRRNAAISAQGLSNI-SGLSNLVKLDLERCPRI-HGGIAHLQGLSK-LE 168
I L L L R I+ GL+ I SG L LD++ C I G L SK L
Sbjct: 501 IRQLELLSHLELRGLKNITGVGLAAIASGCKKLGYLDVKLCENIDDSGFWALAYFSKNLR 560
Query: 169 SLNMNCCNC-LTDVDMKPLSDLTNLKRLE----ISCNKVTDFGISF 209
+N+ CNC ++D + L ++NL R++ + ++VT G F
Sbjct: 561 QINL--CNCSVSDTALCML--MSNLSRVQDVDLVHLSRVTVEGFEF 602
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 7/136 (5%)
Query: 79 FTDQGLACLRDCKNTI--SLNLNYCHQISDCGLEYISGLSNLESLSFRRNAAISAQGLSN 136
T++GL L C + + L+L C+ ++D GLEYIS SNL+ L IS +G+ +
Sbjct: 390 ITEKGLQSL-GCYSMLVQELDLTDCYGVNDRGLEYISKCSNLQRLKLGLCTNISDKGIFH 448
Query: 137 I-SGLSNLVKLDLERCPRI-HGGIAHL-QGLSKLESLNMNCCNCLTDVDMKPLSDLTNLK 193
I S S L++LDL RC G+A L +G L L ++ C LTD ++ + L L
Sbjct: 449 IGSKCSKLLELDLYRCAGFGDDGLAALSRGCKSLNRLILSYCCELTDTGVEQIRQLELLS 508
Query: 194 RLEISCNK-VTDFGIS 208
LE+ K +T G++
Sbjct: 509 HLELRGLKNITGVGLA 524