Miyakogusa Predicted Gene

Lj3g3v0041900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0041900.1 tr|G7IIA0|G7IIA0_MEDTR Sodium-coupled neutral
amino acid transporter OS=Medicago truncatula
GN=MTR_2,88.83,0,Aa_trans,Amino acid transporter, transmembrane;
SUBFAMILY NOT NAMED,NULL; AMINO ACID TRANSPORTER,NUL,CUFF.40230.1
         (210 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80510.1 | Symbols:  | Transmembrane amino acid transporter f...   335   2e-92
AT5G38820.1 | Symbols:  | Transmembrane amino acid transporter f...   174   4e-44
AT3G30390.2 | Symbols:  | Transmembrane amino acid transporter f...   170   7e-43
AT3G30390.1 | Symbols:  | Transmembrane amino acid transporter f...   170   7e-43
AT3G56200.1 | Symbols:  | Transmembrane amino acid transporter f...   161   3e-40
AT2G40420.1 | Symbols:  | Transmembrane amino acid transporter f...   156   1e-38
AT5G15240.1 | Symbols:  | Transmembrane amino acid transporter f...    52   2e-07
AT5G15240.2 | Symbols:  | Transmembrane amino acid transporter f...    51   6e-07
AT2G42005.1 | Symbols:  | Transmembrane amino acid transporter f...    48   5e-06
AT4G38250.1 | Symbols:  | Transmembrane amino acid transporter f...    47   8e-06

>AT1G80510.1 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr1:30273100-30274569 FORWARD
           LENGTH=489
          Length = 489

 Score =  335 bits (858), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 159/211 (75%), Positives = 185/211 (87%), Gaps = 1/211 (0%)

Query: 1   MTNAYVCHFNVQPIYNELQGRSPQKMNRVGRITTVLCILVYASTALSGYLLFGDDTESDV 60
           M+NAYVCHFNVQPIYNEL+GRSP KMNRVGRITT +C++VYASTA+SGYLLFG DTESD+
Sbjct: 279 MSNAYVCHFNVQPIYNELEGRSPHKMNRVGRITTAICVVVYASTAVSGYLLFGKDTESDI 338

Query: 61  LTNFDKDLGIRFSSALNYIVRVGYILHLILVFPVIHFSLRQTVDALVFEGSPPLSESRKR 120
           LTNFD+DLGIRFSSA+NYIVR+GYILHL+LVFPVIHFSLR+TV+ L+FEGSPPLSES+KR
Sbjct: 339 LTNFDQDLGIRFSSAVNYIVRIGYILHLVLVFPVIHFSLRETVNTLLFEGSPPLSESKKR 398

Query: 121 SLGLTFVLLILIYIGSTMIPNIWTAFKFTGATTAVSLGFIFPSLVALRLSHKWD-LSHGE 179
           SLGLT VLL LIYIGSTMIPNIWTAFKFTGAT+AVSLGF FP+L+ALRL  + + LS  E
Sbjct: 399 SLGLTVVLLALIYIGSTMIPNIWTAFKFTGATSAVSLGFTFPALIALRLGKQSNSLSFVE 458

Query: 180 WILSWLMLVLAXXXXXXXXXXNVYSMQSKAQ 210
             +SWLML+LA          N+YS++SK+ 
Sbjct: 459 RSVSWLMLILAVVVSIVGTIGNIYSLESKSD 489


>AT5G38820.1 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr5:15543481-15545182 FORWARD
           LENGTH=456
          Length = 456

 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 95/210 (45%), Positives = 126/210 (60%), Gaps = 5/210 (2%)

Query: 1   MTNAYVCHFNVQPIYNELQGRSPQKMNRVGRITTVLCILVYASTALSGYLLFGDDTESDV 60
           + NAY+CH+NV  I NEL+   P ++  V R    +C  VY  T+L GYLLFGD T  DV
Sbjct: 243 LVNAYICHYNVHSIQNELE--DPSRIKPVVRSALAMCSSVYVMTSLFGYLLFGDGTLDDV 300

Query: 61  LTNFDKDLGIRFSSALNYIVRVGYILHLILVFPVIHFSLRQTVDALVFEGSPPL--SESR 118
           L NFD DLGI F S LN  VR  Y  HL+LVFPV+ + LR  +D L+F  +PPL  SES 
Sbjct: 301 LANFDTDLGIPFGSVLNDAVRFSYAAHLMLVFPVVFYPLRINIDGLIFPTAPPLTSSESD 360

Query: 119 KRSLGLTFVLLILIYIGSTMIPNIWTAFKFTGATTAVSLGFIFPSLVALRLSHKWDLSHG 178
            R   +T  L+ +I++G+  IP+IW AF+FTGAT AV +GFIFP+ V L+  H       
Sbjct: 361 LRFGSITAGLIAVIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAVILKDRHNQATKRD 420

Query: 179 EWILSWLMLVLAXXXXXXXXXXNVYSMQSK 208
           + I +  M+VLA          + Y++  K
Sbjct: 421 KTI-AICMIVLAVFSNAIAIYSDAYALFKK 449


>AT3G30390.2 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr3:11977112-11978827 REVERSE
           LENGTH=460
          Length = 460

 Score =  170 bits (430), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 92/208 (44%), Positives = 128/208 (61%), Gaps = 3/208 (1%)

Query: 1   MTNAYVCHFNVQPIYNELQGRSPQKMNRVGRITTVLCILVYASTALSGYLLFGDDTESDV 60
           +  A++CH+NV  I NEL+   P ++  V R   +LC  VY  T++ G+LLFGDDT  DV
Sbjct: 251 LVTAFICHYNVHSIQNELE--DPSQIRPVVRSALMLCSSVYIMTSIFGFLLFGDDTLDDV 308

Query: 61  LTNFDKDLGIRFSSALNYIVRVGYILHLILVFPVIHFSLRQTVDALVFEGSPPLSESRKR 120
           L NFD DLGI F S LN  VRV Y LHL+LVFP++ + LR  +D L+F  +  LS S  R
Sbjct: 309 LANFDTDLGIPFGSILNDAVRVSYALHLMLVFPIVFYPLRINIDGLLFPSARSLSTSNVR 368

Query: 121 SLGLTFVLLILIYIGSTMIPNIWTAFKFTGATTAVSLGFIFPSLVALRLSHKWDLSHGEW 180
              LT  L+ +I++G+  IP+IW AF+FTGAT AV LGFIFP+ + L+  H    ++ + 
Sbjct: 369 FGCLTAGLISVIFLGANFIPSIWDAFQFTGATAAVCLGFIFPASIILKDRHD-KATNRDT 427

Query: 181 ILSWLMLVLAXXXXXXXXXXNVYSMQSK 208
            L+  M+VLA          + Y++  K
Sbjct: 428 TLAIFMIVLAVLSNAIAIYSDAYALFKK 455


>AT3G30390.1 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr3:11977112-11978827 REVERSE
           LENGTH=460
          Length = 460

 Score =  170 bits (430), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 92/208 (44%), Positives = 128/208 (61%), Gaps = 3/208 (1%)

Query: 1   MTNAYVCHFNVQPIYNELQGRSPQKMNRVGRITTVLCILVYASTALSGYLLFGDDTESDV 60
           +  A++CH+NV  I NEL+   P ++  V R   +LC  VY  T++ G+LLFGDDT  DV
Sbjct: 251 LVTAFICHYNVHSIQNELE--DPSQIRPVVRSALMLCSSVYIMTSIFGFLLFGDDTLDDV 308

Query: 61  LTNFDKDLGIRFSSALNYIVRVGYILHLILVFPVIHFSLRQTVDALVFEGSPPLSESRKR 120
           L NFD DLGI F S LN  VRV Y LHL+LVFP++ + LR  +D L+F  +  LS S  R
Sbjct: 309 LANFDTDLGIPFGSILNDAVRVSYALHLMLVFPIVFYPLRINIDGLLFPSARSLSTSNVR 368

Query: 121 SLGLTFVLLILIYIGSTMIPNIWTAFKFTGATTAVSLGFIFPSLVALRLSHKWDLSHGEW 180
              LT  L+ +I++G+  IP+IW AF+FTGAT AV LGFIFP+ + L+  H    ++ + 
Sbjct: 369 FGCLTAGLISVIFLGANFIPSIWDAFQFTGATAAVCLGFIFPASIILKDRHD-KATNRDT 427

Query: 181 ILSWLMLVLAXXXXXXXXXXNVYSMQSK 208
            L+  M+VLA          + Y++  K
Sbjct: 428 TLAIFMIVLAVLSNAIAIYSDAYALFKK 455


>AT3G56200.1 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr3:20850087-20851779 FORWARD
           LENGTH=435
          Length = 435

 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/208 (42%), Positives = 127/208 (61%), Gaps = 3/208 (1%)

Query: 1   MTNAYVCHFNVQPIYNELQGRSPQKMNRVGRITTVLCILVYASTALSGYLLFGDDTESDV 60
           +  A+  HFNV PI  EL  + P ++    +I+ +LC  +Y +T L GYLLFGD T SD+
Sbjct: 231 IVTAFTFHFNVHPIGFEL--KDPLQVIPATKISVILCAAIYFATGLFGYLLFGDATMSDI 288

Query: 61  LTNFDKDLGIRFSSALNYIVRVGYILHLILVFPVIHFSLRQTVDALVFEGSPPLSESRKR 120
           L NFD+  G    S LN IVR+ Y+LHL+LVFP+++FSLR  +D L++   P L +  KR
Sbjct: 289 LVNFDQSSGSSIGSLLNDIVRLSYVLHLMLVFPLLNFSLRANLDELLYPKKPSLEKDTKR 348

Query: 121 SLGLTFVLLILIYIGSTMIPNIWTAFKFTGATTAVSLGFIFPSLVALRLSHKWDLSHGEW 180
            +GLT  LLI  ++ +  +P+IW  F+F G+T  VS+ FIFP+ + LR  H    S  E 
Sbjct: 349 FIGLTLALLICCFLSAIAVPDIWYFFQFMGSTITVSIAFIFPAAIVLRNIHGVSTSR-EK 407

Query: 181 ILSWLMLVLAXXXXXXXXXXNVYSMQSK 208
           I++ +MLVLA          N+YS+ + 
Sbjct: 408 IVAAIMLVLAVATSIIAISTNLYSLAAN 435


>AT2G40420.1 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr2:16877300-16878982 FORWARD
           LENGTH=440
          Length = 440

 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/210 (40%), Positives = 125/210 (59%), Gaps = 3/210 (1%)

Query: 1   MTNAYVCHFNVQPIYNELQGRSPQKMNRVGRITTVLCILVYASTALSGYLLFGDDTESDV 60
           +  A+  HFNV P+  EL  + P  +    RI+ +LC  +Y++T L  YLLFGD T +DV
Sbjct: 233 IVTAFTFHFNVHPVAFEL--KDPLNVLSATRISVILCATIYSATGLFCYLLFGDSTMTDV 290

Query: 61  LTNFDKDLGIRFSSALNYIVRVGYILHLILVFPVIHFSLRQTVDALVFEGSPPLSESRKR 120
           L NFD+       S LN IVR+ Y +HL+LVFP+++FSLR  +D L+F     L E  KR
Sbjct: 291 LMNFDQSTSSSVGSLLNDIVRLSYAIHLMLVFPLLNFSLRANLDELLFPMKLSLVEDNKR 350

Query: 121 SLGLTFVLLILIYIGSTMIPNIWTAFKFTGATTAVSLGFIFPSLVALRLSHKWDLSHGEW 180
              LTF LLI  ++G+  IP+IW  F+F G+T+ VS+ FIFP+ + LR  + +  +  E 
Sbjct: 351 FFALTFPLLISCFLGAIAIPDIWYFFQFLGSTSTVSIAFIFPAAIVLRNVNGFS-TLREK 409

Query: 181 ILSWLMLVLAXXXXXXXXXXNVYSMQSKAQ 210
           I++ +MLVLA          N+Y+  +  +
Sbjct: 410 IVASVMLVLAVATSIIAISTNIYTFTATEE 439


>AT5G15240.1 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr5:4947762-4950211 FORWARD LENGTH=423
          Length = 423

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 15/173 (8%)

Query: 4   AYVCHFNVQPIYNELQGRSPQKMNRVGRITTVLCILVYASTALSGYLLFGDDTESDVLTN 63
            Y  H     +Y  ++ +  ++ + V  I   +C  +YAS A+ GYL++G D ES +  N
Sbjct: 229 CYCAHPVFPTLYTSMKNK--RQFSNVMIICFTICTFIYASVAVLGYLMYGSDVESQITLN 286

Query: 64  FDKDLGIRFSSALNYIVRVGYILHLILVFPVIHFSLRQT--VDALVFEGSPPLSESRKRS 121
              D   + SS +         +   LV P+  F+L  T  +DA+    S  L   R   
Sbjct: 287 LPTD---KLSSKVA--------IWTTLVNPIAKFALMVTPIIDAMRSRFSRVLPNKRASG 335

Query: 122 LGLTFVLLILIYIGSTMIPNIWTAFKFTGATTAVSLGFIFPSLVALRLSHKWD 174
             L+ +L+    I + ++P         GA  + S   I P L  L++S K+ 
Sbjct: 336 FLLSTILVTSNVIVALLLPFFGDLMSLVGAFLSASASVILPCLCYLKISGKYQ 388


>AT5G15240.2 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr5:4947762-4950211 FORWARD LENGTH=313
          Length = 313

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 14/159 (8%)

Query: 18  LQGRSPQKM-NRVGRITTVLCILVYASTALSGYLLFGDDTESDVLTNFDKDLGIRFSSAL 76
           L+G +  K+ + V  I   +C  +YAS A+ GYL++G D ES +  N   D   + SS +
Sbjct: 130 LEGDNLNKLFSNVMIICFTICTFIYASVAVLGYLMYGSDVESQITLNLPTD---KLSSKV 186

Query: 77  NYIVRVGYILHLILVFPVIHFSLRQT--VDALVFEGSPPLSESRKRSLGLTFVLLILIYI 134
                    +   LV P+  F+L  T  +DA+    S  L   R     L+ +L+    I
Sbjct: 187 A--------IWTTLVNPIAKFALMVTPIIDAMRSRFSRVLPNKRASGFLLSTILVTSNVI 238

Query: 135 GSTMIPNIWTAFKFTGATTAVSLGFIFPSLVALRLSHKW 173
            + ++P         GA  + S   I P L  L++S K+
Sbjct: 239 VALLLPFFGDLMSLVGAFLSASASVILPCLCYLKISGKY 277


>AT2G42005.1 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr2:17531323-17532564 REVERSE
           LENGTH=413
          Length = 413

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 74/148 (50%), Gaps = 15/148 (10%)

Query: 17  ELQGRSPQKMNRVGRITTVLCILVYASTALSGYLLFGDDTESDVLTNFDKDLGIRFSSAL 76
           E + +   K  +V  ++ +   ++Y S  + GY+ FGDDT  D++T    +LG    S+L
Sbjct: 238 ESETKDKDKFGKVLALSMLFIAVMYGSFGVLGYMAFGDDT-MDIIT---ANLGAGVVSSL 293

Query: 77  NYIVRVGYILHLILVFPVIHFSLRQTVDALVFEGSPPLSESRKRSLGLTFVLLILIYIGS 136
              V++G  ++L   FP++   + + V+   + G           + L ++L++ + + +
Sbjct: 294 ---VQLGLCINLFFTFPLMMNPVFEIVERRFWSG--------MYCVWLRWLLVLAVTLVA 342

Query: 137 TMIPNIWTAFKFTGATTAVSLGFIFPSL 164
            ++PN        G++   +LGF+ PSL
Sbjct: 343 LLVPNFADFLSLVGSSVCCALGFVLPSL 370


>AT4G38250.1 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr4:17935533-17936843 FORWARD
           LENGTH=436
          Length = 436

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)

Query: 11  VQPIYNELQGRSPQKMNRVGRITTVLCILVYASTALSGYLLFGDDTESDVLTNFDKDLGI 70
           V P+ +E++ +   K  +V  +      L+Y +  + GYL FG+DT   +  N    L  
Sbjct: 255 VLPLESEMKDK--DKFGKVLALGMGFISLIYIAFGILGYLAFGEDTMDIITANLGAGL-- 310

Query: 71  RFSSALNYIVRVGYILHLILVFPVIHFSLRQTVDALVFEGSPPLSESRKRSLG-----LT 125
                ++ +V++G  ++L   FP++   + + V+             R+ S G     L 
Sbjct: 311 -----VSTVVQLGLCINLFFTFPLMMNPVFEIVE-------------RRFSRGMYSAWLR 352

Query: 126 FVLLILIYIGSTMIPNIWTAFKFTGATTAVSLGFIFPSLVALRLSHKWDLSHGEW 180
           +VL++ + + +  +PN        G++T   LGF+ P+L  L L  K ++   +W
Sbjct: 353 WVLVLAVTLVALFVPNFADFLSLVGSSTCCVLGFVLPALFHL-LVFKEEMGWLQW 406