Miyakogusa Predicted Gene

Lj3g3v0029620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0029620.1 tr|G7KJZ8|G7KJZ8_MEDTR Glucose-6-phosphate
isomerase OS=Medicago truncatula GN=MTR_6g009330 PE=3
SV=,90.95,0,P_GLUCOSE_ISOMERASE_3,Phosphoglucose isomerase (PGI);
PGI,Phosphoglucose isomerase (PGI); SIS
domain,NODE_16806_length_851_cov_459.501770.path2.1
         (210 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42740.1 | Symbols:  | Sugar isomerase (SIS) family protein |...   336   7e-93

>AT5G42740.1 | Symbols:  | Sugar isomerase (SIS) family protein |
           chr5:17136080-17140622 FORWARD LENGTH=560
          Length = 560

 Score =  336 bits (862), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 159/198 (80%), Positives = 173/198 (87%)

Query: 1   MESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVS 60
           MESNGKGVSIDG+PLPFE GEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIG+VKSQQPV 
Sbjct: 360 MESNGKGVSIDGLPLPFETGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGIVKSQQPVY 419

Query: 61  LKGEVVSNHDELMSNYFAQPDALAYGKTAEQLQKENVSPHLIPHKTFSGNRXXXXXXXXX 120
           LKGEVVSNHDELMSN+FAQPDALAYGKT EQLQKENVS +LIPHKTFSGNR         
Sbjct: 420 LKGEVVSNHDELMSNFFAQPDALAYGKTPEQLQKENVSENLIPHKTFSGNRPSLSLLLPE 479

Query: 121 XXXXXXGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLNASRTKGEPVQG 180
                 GQLLAIYEHR+AV+GF+WGINSFDQWGVELGK LATQVRKQL++SRT+G   +G
Sbjct: 480 LTAYNVGQLLAIYEHRVAVQGFVWGINSFDQWGVELGKVLATQVRKQLHSSRTQGTAPEG 539

Query: 181 FNFSTTTVLTRYLQASSE 198
           FN+STTT+L RYL+ SSE
Sbjct: 540 FNYSTTTLLKRYLETSSE 557