Miyakogusa Predicted Gene
- Lj3g3v0028570.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0028570.1 Non Chatacterized Hit- tr|I1KGX0|I1KGX0_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,46.9,0,seg,NULL; HLH,Helix-loop-helix domain; SUBFAMILY NOT
NAMED,NULL; CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/P,CUFF.40207.1
(277 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G22760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 130 1e-30
AT4G37850.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 124 7e-29
AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 109 2e-24
AT2G22770.1 | Symbols: NAI1 | basic helix-loop-helix (bHLH) DNA-... 107 7e-24
AT2G22750.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 105 3e-23
AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bind... 64 8e-11
AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type tran... 62 6e-10
AT4G09820.1 | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHL... 62 6e-10
AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bind... 61 9e-10
AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH) DNA-... 59 3e-09
AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 59 3e-09
AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 59 3e-09
AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHL... 58 9e-09
AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 57 1e-08
AT4G00870.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 56 3e-08
AT1G01260.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 55 4e-08
AT1G01260.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 55 4e-08
AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 55 4e-08
AT2G16910.1 | Symbols: AMS | basic helix-loop-helix (bHLH) DNA-b... 55 4e-08
AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 55 5e-08
AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 55 5e-08
AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 55 5e-08
AT5G57150.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 55 6e-08
AT5G57150.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 55 6e-08
AT5G57150.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 55 6e-08
AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |... 55 7e-08
AT5G57150.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 54 1e-07
AT3G61950.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 54 1e-07
AT3G61950.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 54 1e-07
AT4G29930.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 52 3e-07
AT5G46830.1 | Symbols: ATNIG1, NIG1 | NACL-inducible gene 1 | ch... 52 6e-07
AT4G29930.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 8e-07
AT4G29930.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 9e-07
AT2G28160.1 | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29, ... 51 9e-07
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079489-1508... 48 7e-06
>AT2G22760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9678012-9679165 FORWARD
LENGTH=295
Length = 295
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 117/175 (66%), Gaps = 3/175 (1%)
Query: 94 DHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAKK 153
+H +AERKRR +L++ FIALSAL+PGLKK DKV+IL +A + +KQLQ +++ ++E+
Sbjct: 119 EHVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDAISRMKQLQEQLRTLKEEKEAT 178
Query: 154 IIVESMSVLNDAGFHYDQGIVPYNMNSDNRHKLNDAALPEVEARVMEKQVLIRIHCDGNQ 213
+ESM ++ + +D+ P S + H D ALPE+EA++ + +LIRI C+ ++
Sbjct: 179 RQMESMILVKKSKVFFDEE--PNLSCSPSVHIEFDQALPEIEAKISQNDILIRILCEKSK 236
Query: 214 DILLKTLSHVTSLDLSIVSHTMLPFRKISLDVTIIAQMGDNYKIT-LKDLVRSLR 267
++ L+ + + L I + +LPF +LD+T++AQM ++ ++ LKDLVR+LR
Sbjct: 237 GCMINILNTIENFQLRIENSIVLPFGDSTLDITVLAQMDKDFSMSILKDLVRNLR 291
>AT4G37850.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:17796362-17797647 REVERSE
LENGTH=328
Length = 328
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 114/177 (64%), Gaps = 4/177 (2%)
Query: 94 DHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAKK 153
DH +AERKRR +LTQ F+ALSAL+PGLKK+DK S+L +A ++K LQ RV E+EEQ ++
Sbjct: 152 DHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIKYLQERVGELEEQKKER 211
Query: 154 IIVESMSVLNDAGFHYDQGIVPYNMNSDNRHKLNDAALPEVEARVMEKQVLIRIHCDGNQ 213
+ ESM ++ + D ++ + ++ +D LPE+E R ++ VLI+I C+ +
Sbjct: 212 RL-ESMVLVKKSKLILDDNNQSFSSSCED--GFSDLDLPEIEVRFSDEDVLIKILCEKQK 268
Query: 214 DILLKTLSHVTSLDLSIVSHTMLPFRKISLDVTIIAQMGDNYKITLKDLVRSLRKVL 270
L K ++ + L + I + ++L F +LD+TIIA+ ++ +TL D+V+SLR L
Sbjct: 269 GHLAKIMAEIEKLHILITNSSVLNFGP-TLDITIIAKKESDFDMTLMDVVKSLRSAL 324
>AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9672145-9673624 FORWARD
LENGTH=305
Length = 305
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 113/174 (64%), Gaps = 3/174 (1%)
Query: 94 DHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAKK 153
DH +AERKRR +LTQ F+ALSALIPGLKK+DK S+L +A ++K LQ VKE EEQ +K
Sbjct: 126 DHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYLQESVKEYEEQKKEK 185
Query: 154 IIVESMSVLNDAGFHYDQGIVP-YNMNSDNRHKLNDAALPEVEARVMEKQVLIRIHCDGN 212
+ ES+ ++ + D+ P + +SD + + LPE+E RV K VLI+I C+
Sbjct: 186 TM-ESVVLVKKSSLVLDENHQPSSSSSSDGNRNSSSSNLPEIEVRVSGKDVLIKILCEKQ 244
Query: 213 QDILLKTLSHVTSLDLSIVSHTMLPFRKISLDVTIIAQMGDNYKITLKDLVRSL 266
+ ++K + + L LSI + +LPF + D++IIAQ +N+ + ++D+V++L
Sbjct: 245 KGNVIKIMGEIEKLGLSITNSNVLPFGP-TFDISIIAQKNNNFDMKIEDVVKNL 297
>AT2G22770.1 | Symbols: NAI1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr2:9684858-9686321
FORWARD LENGTH=320
Length = 320
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 111/202 (54%), Gaps = 36/202 (17%)
Query: 94 DHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAKK 153
+H +AERKRR +L + IALSAL+PGLKK DK ++L++A ++KQLQ RVK++EE+ +
Sbjct: 132 EHVLAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAIKHLKQLQERVKKLEEE---R 188
Query: 154 IIVESMSVLNDAGFHYDQGIVPYNMNS-----------------------DNRHKLNDAA 190
++ + M DQ I+ + + +
Sbjct: 189 VVTKKM----------DQSIILVKRSQVYLDDDSSSYSSTCSAASPLSSSSDEVSIFKQT 238
Query: 191 LPEVEARVMEKQVLIRIHCDGNQDILLKTLSHVTSLDLSIVSHTMLPFRKISLDVTIIAQ 250
+P +EARV ++ +LIR+HC+ N+ ++K LS + L +V+ LPF +L +TI+ +
Sbjct: 239 MPMIEARVSDRDLLIRVHCEKNKGCMIKILSSLEKFRLEVVNSFTLPFGNSTLVITILTK 298
Query: 251 MGDNYKITLKDLVRSLRKVLLE 272
M + + ++++V+++R L E
Sbjct: 299 MDNKFSRPVEEVVKNIRVALAE 320
>AT2G22750.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9672145-9673624 FORWARD
LENGTH=304
Length = 304
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 113/174 (64%), Gaps = 4/174 (2%)
Query: 94 DHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAKK 153
DH +AERKRR +LTQ F+ALSALIPGLKK+DK S+L +A ++K LQ VKE EEQ +K
Sbjct: 126 DHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYLQESVKEYEEQKKEK 185
Query: 154 IIVESMSVLNDAGFHYDQGIVP-YNMNSDNRHKLNDAALPEVEARVMEKQVLIRIHCDGN 212
+ ES+ ++ + D+ P + +SD + + LPE+E RV K VLI+I C+
Sbjct: 186 TM-ESVVLVKKSSLVLDENHQPSSSSSSDGNRNSSSSNLPEIEVRVSGKDVLIKILCEKQ 244
Query: 213 QDILLKTLSHVTSLDLSIVSHTMLPFRKISLDVTIIAQMGDNYKITLKDLVRSL 266
+ ++K + + L LSI + +LPF + D++IIAQ +N+ + ++D+V++L
Sbjct: 245 KGNVIKIMGEIEKLGLSITNSNVLPFGP-TFDISIIAQ-NNNFDMKIEDVVKNL 296
>AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr5:18974231-18976009 FORWARD
LENGTH=592
Length = 592
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 93 LDHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEME---EQ 149
L+H AER+RR +L Q F +L A++P + K+DK S+L +A +Y+ +L++++++ E E+
Sbjct: 414 LNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSKLQQAESDKEE 473
Query: 150 SAKKIIVESMSVLNDAGFHYDQGIVPYNMNSDNRHKLNDAALPEVEARVMEKQVLIRIHC 209
KK+ S N G G S N+ + E++ +++ V+IR+ C
Sbjct: 474 IQKKLDGMSKEGNNGKGC----GSRAKERKSSNQDSTASSIEMEIDVKIIGWDVMIRVQC 529
Query: 210 DGNQDILLKTLSHVTSLD-------LSIVSHTMLP----------FRKISLDVTIIAQMG 252
+ + + LD LS+V+ M+ F L V ++ ++G
Sbjct: 530 GKKDHPGARFMEALKELDLEVNHASLSVVNDLMIQQATVKMGSQFFNHDQLKVALMTKVG 589
Query: 253 DNY 255
+NY
Sbjct: 590 ENY 592
>AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type
transcription factor | chr2:19091187-19092887 REVERSE
LENGTH=566
Length = 566
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 43/57 (75%)
Query: 93 LDHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQ 149
L+H AER+RR +L Q F AL +++P + K+DK S+L +A +Y+K+LQ +VK ME++
Sbjct: 394 LNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIMEDE 450
>AT4G09820.1 | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:6182067-6186261
FORWARD LENGTH=518
Length = 518
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 25/128 (19%)
Query: 93 LDHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAK 152
L H VAER+RR +L + FI L +++P + K+DKVSIL + YV L+ RV E+E
Sbjct: 362 LSHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENT--- 418
Query: 153 KIIVESMSVLNDAGFHYDQGIVPYNMNSDNRHKLNDAALPEVEARVMEKQVLIRIHCDGN 212
H++Q + + K ++ EVE ++E VL+ + C+
Sbjct: 419 ---------------HHEQQ---HKRTRTCKRKTSE----EVEVSIIENDVLLEMRCEYR 456
Query: 213 QDILLKTL 220
+LL L
Sbjct: 457 DGLLLDIL 464
>AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr4:9933702-9935471 REVERSE LENGTH=589
Length = 589
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 89/182 (48%), Gaps = 22/182 (12%)
Query: 93 LDHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAK 152
L+H AER+RR +L Q F +L A++P + K+DK S+L +A +Y+ +L++++++ E S K
Sbjct: 415 LNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQKAE--SDK 472
Query: 153 KIIVESMSVLNDAGFHYDQGIVPYNMNSDNRHKLNDAALP----EVEARVMEKQVLIRIH 208
+ + + + V+N + + +R LN + EV+ +++ +IRI
Sbjct: 473 EELQKQIDVMNKEAGNAKSSV-------KDRKCLNQESSVLIEMEVDVKIIGWDAMIRIQ 525
Query: 209 CDGNQDILLKTLSHVTSLD-------LSIVSHTMLPFRKISLDVTIIAQMGDNYKITLKD 261
C K + + LD LS+V+ M+ + + Q D K+ L +
Sbjct: 526 CSKRNHPGAKFMEALKELDLEVNHASLSVVNDLMIQQATVKMGNQFFTQ--DQLKVALTE 583
Query: 262 LV 263
V
Sbjct: 584 KV 585
>AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:23599809-23602734
FORWARD LENGTH=596
Length = 596
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%)
Query: 94 DHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEME 147
+HA++E+KRR +L + F+ L ++IP + KIDKVSIL + Y++ LQ RV+E+E
Sbjct: 405 NHALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQELE 458
>AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%)
Query: 94 DHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEME 147
+HA++E+KRR +L + F+ L ++IP + KIDKVSIL + Y++ LQ RV+E+E
Sbjct: 405 NHALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQELE 458
>AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%)
Query: 94 DHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEME 147
+HA++E+KRR +L + F+ L ++IP + KIDKVSIL + Y++ LQ RV+E+E
Sbjct: 405 NHALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQELE 458
>AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:16529457-16532866
FORWARD LENGTH=637
Length = 637
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 94 DHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEME 147
+HAV E+KRR +L + F+ L +IP + KIDKVSIL + Y+++L+ RV+E+E
Sbjct: 441 NHAVLEKKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQELERRVQELE 494
>AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:9267599-9269002 FORWARD
LENGTH=467
Length = 467
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 93 LDHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQN--RVKEMEEQS 150
L+H AER+RR +L Q F AL A++P + K+DK S+L +A TY+ +Q RV E E+Q
Sbjct: 319 LNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAITYITDMQKKIRVYETEKQI 378
Query: 151 AKK 153
K+
Sbjct: 379 MKR 381
>AT4G00870.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:362230-363639 REVERSE
LENGTH=423
Length = 423
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 93 LDHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAK 152
L H AE++RR +L F AL A++P + ++DK S+L +A +Y++ L++++ ++E + K
Sbjct: 248 LSHVEAEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYIESLKSKIDDLETE-IK 306
Query: 153 KIIVESMSVLNDAGFHYDQGIVPYNMNSDNRHKLNDAALPEVEARVMEKQVLIRIHCD 210
K+ + L+++ + V Y +N K N + EV+ +++ ++ +IR+ +
Sbjct: 307 KMKMTETDKLDNSSSNTSPSSVEYQVN-QKPSKSNRGSDLEVQVKIVGEEAIIRVQTE 363
>AT1G01260.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 40/57 (70%)
Query: 93 LDHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQ 149
L+H AER+RR +L Q F AL +++P + K+DK S+L +A +Y+ +L ++K ME +
Sbjct: 432 LNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAE 488
>AT1G01260.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 40/57 (70%)
Query: 93 LDHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQ 149
L+H AER+RR +L Q F AL +++P + K+DK S+L +A +Y+ +L ++K ME +
Sbjct: 432 LNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAE 488
>AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 40/57 (70%)
Query: 93 LDHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQ 149
L+H AER+RR +L Q F AL +++P + K+DK S+L +A +Y+ +L ++K ME +
Sbjct: 432 LNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAE 488
>AT2G16910.1 | Symbols: AMS | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr2:7331721-7334077
FORWARD LENGTH=571
Length = 571
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 38/53 (71%)
Query: 97 VAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQ 149
+AER+RR +L AL +L+P + K+D+ SIL +A YVK+LQN KE++++
Sbjct: 317 MAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQDE 369
>AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 20/182 (10%)
Query: 97 VAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRV----KEMEEQSAK 152
+AER+RR +L L +++P + K+D+ SIL +A Y+K+L R+ E+E
Sbjct: 310 MAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPG 369
Query: 153 KIIVESMSVLNDAGFHYDQGIVPYNMNSDNRHKLNDAALP-------EVEARVME-KQVL 204
+ S S FH P ++ + +L ++LP VE R+ E + V
Sbjct: 370 SLPPTSSS------FH-PLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGRAVN 422
Query: 205 IRIHCDGNQDILLKTLSHVTSLDLSIVSHTMLPFRKISLDVTIIAQMGDNYKITLKDLVR 264
I + C +LL T+ + +L L + + F +LDV Q + +I L D ++
Sbjct: 423 IHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQCQEGQEI-LPDQIK 481
Query: 265 SL 266
++
Sbjct: 482 AV 483
>AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 20/182 (10%)
Query: 97 VAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRV----KEMEEQSAK 152
+AER+RR +L L +++P + K+D+ SIL +A Y+K+L R+ E+E
Sbjct: 310 MAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPG 369
Query: 153 KIIVESMSVLNDAGFHYDQGIVPYNMNSDNRHKLNDAALP-------EVEARVME-KQVL 204
+ S S FH P ++ + +L ++LP VE R+ E + V
Sbjct: 370 SLPPTSSS------FH-PLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGRAVN 422
Query: 205 IRIHCDGNQDILLKTLSHVTSLDLSIVSHTMLPFRKISLDVTIIAQMGDNYKITLKDLVR 264
I + C +LL T+ + +L L + + F +LDV Q + +I L D ++
Sbjct: 423 IHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQCQEGQEI-LPDQIK 481
Query: 265 SL 266
++
Sbjct: 482 AV 483
>AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 20/182 (10%)
Query: 97 VAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRV----KEMEEQSAK 152
+AER+RR +L L +++P + K+D+ SIL +A Y+K+L R+ E+E
Sbjct: 310 MAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPG 369
Query: 153 KIIVESMSVLNDAGFHYDQGIVPYNMNSDNRHKLNDAALP-------EVEARVME-KQVL 204
+ S S FH P ++ + +L ++LP VE R+ E + V
Sbjct: 370 SLPPTSSS------FH-PLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGRAVN 422
Query: 205 IRIHCDGNQDILLKTLSHVTSLDLSIVSHTMLPFRKISLDVTIIAQMGDNYKITLKDLVR 264
I + C +LL T+ + +L L + + F +LDV Q + +I L D ++
Sbjct: 423 IHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQCQEGQEI-LPDQIK 481
Query: 265 SL 266
++
Sbjct: 482 AV 483
>AT5G57150.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154872 FORWARD
LENGTH=247
Length = 247
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 10/149 (6%)
Query: 97 VAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAKKIIV 156
V+ER RR +L Q AL +++P + K+DK SI+K+A +Y++ LQ K++E + +
Sbjct: 57 VSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELEST 116
Query: 157 ESMSVLNDAGFHYDQGIVPYNMNSDNRHKLNDA---ALPEV-EARVM---EKQVLIRIHC 209
S+ F D +VP + S +L+ +L EV E +V E+ +++ + C
Sbjct: 117 PKSSLSFSKDFDRDL-LVP--VTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVSVTC 173
Query: 210 DGNQDILLKTLSHVTSLDLSIVSHTMLPF 238
+ D ++K SL+L I++ + F
Sbjct: 174 NKRTDTMVKLCEVFESLNLKILTSNLTSF 202
>AT5G57150.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154556 FORWARD
LENGTH=219
Length = 219
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 10/149 (6%)
Query: 97 VAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAKKIIV 156
V+ER RR +L Q AL +++P + K+DK SI+K+A +Y++ LQ K++E + +
Sbjct: 58 VSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELEST 117
Query: 157 ESMSVLNDAGFHYDQGIVPYNMNSDNRHKLNDA---ALPEV-EARVM---EKQVLIRIHC 209
S+ F D +VP + S +L+ +L EV E +V E+ +++ + C
Sbjct: 118 PKSSLSFSKDFDRDL-LVP--VTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVSVTC 174
Query: 210 DGNQDILLKTLSHVTSLDLSIVSHTMLPF 238
+ D ++K SL+L I++ + F
Sbjct: 175 NKRTDTMVKLCEVFESLNLKILTSNLTSF 203
>AT5G57150.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23153293 FORWARD
LENGTH=226
Length = 226
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 10/149 (6%)
Query: 97 VAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAKKIIV 156
V+ER RR +L Q AL +++P + K+DK SI+K+A +Y++ LQ K++E + +
Sbjct: 58 VSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELEST 117
Query: 157 ESMSVLNDAGFHYDQGIVPYNMNSDNRHKLNDA---ALPEV-EARVM---EKQVLIRIHC 209
S+ F D +VP + S +L+ +L EV E +V E+ +++ + C
Sbjct: 118 PKSSLSFSKDFDRDL-LVP--VTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVSVTC 174
Query: 210 DGNQDILLKTLSHVTSLDLSIVSHTMLPF 238
+ D ++K SL+L I++ + F
Sbjct: 175 NKRTDTMVKLCEVFESLNLKILTSNLTSF 203
>AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |
Basic helix-loop-helix (bHLH) DNA-binding family protein
| chr1:11799042-11800913 REVERSE LENGTH=623
Length = 623
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 40/57 (70%)
Query: 93 LDHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQ 149
L+H AER+RR +L Q F AL A++P + K+DK S+L +A Y+ +L+++V + E +
Sbjct: 451 LNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKVVKTESE 507
>AT5G57150.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154801 FORWARD
LENGTH=264
Length = 264
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 78/151 (51%), Gaps = 10/151 (6%)
Query: 95 HAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAKKI 154
+ V+ER RR +L Q AL +++P + K+DK SI+K+A +Y++ LQ K++E + +
Sbjct: 56 NIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELE 115
Query: 155 IVESMSVLNDAGFHYDQGIVPYNMNSDNRHKLNDAA------LPEVEARVM-EKQVLIRI 207
S+ F D +VP + S +L+ + + E++ M E+ +++ +
Sbjct: 116 STPKSSLSFSKDFDRDL-LVP--VTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVSV 172
Query: 208 HCDGNQDILLKTLSHVTSLDLSIVSHTMLPF 238
C+ D ++K SL+L I++ + F
Sbjct: 173 TCNKRTDTMVKLCEVFESLNLKILTSNLTSF 203
>AT3G61950.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:22940231-22941332 FORWARD
LENGTH=307
Length = 307
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 77/142 (54%), Gaps = 9/142 (6%)
Query: 93 LDHAVAERKRRLELTQGFIALSALIPG--LKKIDKVSILKEATTYVKQLQNRVKEMEEQS 150
++H ER RR ++ + +L AL+P +++ D+ SI+ A YVK L+ ++ +E Q
Sbjct: 127 INHIAVERNRRRQMNEHINSLRALLPPSYIQRGDQASIVGGAINYVKVLEQIIQSLESQ- 185
Query: 151 AKKIIVESMSVLNDAGFHYDQGIVPYNMNSDNRHKLND-AALPEVEARVMEKQVLIRIHC 209
K+ +S S + + ++ GI ++D L D +P++EA V++ V +++ C
Sbjct: 186 -KRTQQQSNSEVVENALNHLSGIS----SNDLWTTLEDQTCIPKIEATVIQNHVSLKVQC 240
Query: 210 DGNQDILLKTLSHVTSLDLSIV 231
+ Q LLK + + L L+++
Sbjct: 241 EKKQGQLLKGIISLEKLKLTVL 262
>AT3G61950.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:22939661-22941332 FORWARD
LENGTH=358
Length = 358
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 77/142 (54%), Gaps = 9/142 (6%)
Query: 93 LDHAVAERKRRLELTQGFIALSALIPG--LKKIDKVSILKEATTYVKQLQNRVKEMEEQS 150
++H ER RR ++ + +L AL+P +++ D+ SI+ A YVK L+ ++ +E Q
Sbjct: 178 INHIAVERNRRRQMNEHINSLRALLPPSYIQRGDQASIVGGAINYVKVLEQIIQSLESQ- 236
Query: 151 AKKIIVESMSVLNDAGFHYDQGIVPYNMNSDNRHKLND-AALPEVEARVMEKQVLIRIHC 209
K+ +S S + + ++ GI ++D L D +P++EA V++ V +++ C
Sbjct: 237 -KRTQQQSNSEVVENALNHLSGI----SSNDLWTTLEDQTCIPKIEATVIQNHVSLKVQC 291
Query: 210 DGNQDILLKTLSHVTSLDLSIV 231
+ Q LLK + + L L+++
Sbjct: 292 EKKQGQLLKGIISLEKLKLTVL 313
>AT4G29930.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14647449 FORWARD
LENGTH=225
Length = 225
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 76/145 (52%), Gaps = 15/145 (10%)
Query: 95 HAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAKKI 154
+ V+ER RR +L Q AL +++P + K+DK S++K++ Y+++L ++ K +E + +
Sbjct: 55 NVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRE-- 112
Query: 155 IVESMSVLNDAGFHYDQGIVPYNMNSDNRHKLNDAALPEVEARVM-EKQVLIRIHCDGNQ 213
+ES S L + Y + Y + + E++ M EK V++ I C +
Sbjct: 113 -LESRSTLLENPMDYSTRVQHYPIE-----------VLEMKVTWMGEKTVVVCITCSKKR 160
Query: 214 DILLKTLSHVTSLDLSIVSHTMLPF 238
+ +++ + SL+L+I++ F
Sbjct: 161 ETMVQLCKVLESLNLNILTTNFSSF 185
>AT5G46830.1 | Symbols: ATNIG1, NIG1 | NACL-inducible gene 1 |
chr5:19002719-19004254 FORWARD LENGTH=511
Length = 511
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 38/55 (69%)
Query: 93 LDHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEME 147
L+H AER RR +L F AL A++P + K+DK S+L++A Y+ +L+++ + +E
Sbjct: 342 LNHVEAERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKAENVE 396
>AT4G29930.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14645505 FORWARD
LENGTH=263
Length = 263
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 88/174 (50%), Gaps = 19/174 (10%)
Query: 95 HAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVK----EMEEQS 150
+ V+ER RR +L Q AL +++P + K+DK S++K++ Y+++L ++ K E+ E
Sbjct: 55 NVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRELE 114
Query: 151 AKKIIVESMSVLNDAGFHYDQGIVPYNMNSDNRHK----------LNDAALPEVEARVM- 199
++ ++E+ D F + + ++ N+D R K + + +E +V
Sbjct: 115 SRSTLLENPVRDYDCNFA-ETHLQDFSDNNDMRSKKFKQMDYSTRVQHYPIEVLEMKVTW 173
Query: 200 --EKQVLIRIHCDGNQDILLKTLSHVTSLDLSIVSHTMLPFRKISLDVTIIAQM 251
EK V++ I C ++ +++ + SL+L+I++ F L T+ Q+
Sbjct: 174 MGEKTVVVCITCSKKRETMVQLCKVLESLNLNILTTNFSSFTS-RLSTTLFLQV 226
>AT4G29930.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14647449 FORWARD
LENGTH=254
Length = 254
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 83/161 (51%), Gaps = 18/161 (11%)
Query: 95 HAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVK----EMEEQS 150
+ V+ER RR +L Q AL +++P + K+DK S++K++ Y+++L ++ K E+ E
Sbjct: 55 NVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRELE 114
Query: 151 AKKIIVESMSVLNDAGFHYDQGIVPYNMNSDNRHK----------LNDAALPEVEARVM- 199
++ ++E+ D F + + ++ N+D R K + + +E +V
Sbjct: 115 SRSTLLENPVRDYDCNFA-ETHLQDFSDNNDMRSKKFKQMDYSTRVQHYPIEVLEMKVTW 173
Query: 200 --EKQVLIRIHCDGNQDILLKTLSHVTSLDLSIVSHTMLPF 238
EK V++ I C ++ +++ + SL+L+I++ F
Sbjct: 174 MGEKTVVVCITCSKKRETMVQLCKVLESLNLNILTTNFSSF 214
>AT2G28160.1 | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29,
ATFIT1 | FER-like regulator of iron uptake |
chr2:12004713-12005908 FORWARD LENGTH=318
Length = 318
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 18/139 (12%)
Query: 97 VAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAKKIIV 156
++ER+RR + AL +L+P + K+DK SI+ +A YV++LQ++ K++ K I
Sbjct: 134 ISERRRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQAKKL-----KSDIA 188
Query: 157 ESMSVLNDAGFHYD-----QGIVPY-NMNSDNRHKLNDAALPEVEARVMEKQVLIRIHCD 210
+ LN G + + Q P+ +N K+ + +VE EK +R+ C+
Sbjct: 189 GLEASLNSTGGYQEHAPDAQKTQPFRGINPPASKKIIQMDVIQVE----EKGFYVRLVCN 244
Query: 211 GNQDI---LLKTLSHVTSL 226
+ + L K+L +TS
Sbjct: 245 KGEGVAPSLYKSLESLTSF 263
>AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 |
chr4:15079489-15081606 REVERSE LENGTH=310
Length = 310
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 95 HAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAKKI 154
H++AER RR + + +L L+P K DK S+L E YVK LQ +VK +
Sbjct: 141 HSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA 200
Query: 155 IVESMSVLNDAGFHYDQGIVPYNMNSDNRHKLNDAALPEVEARVMEKQVLIRIHCDGNQD 214
S + DAG ++ N +S K+ + + A++ME+ + + +
Sbjct: 201 ASASSQISEDAGGSHE------NTSSSGEAKMTEHQV----AKLMEEDMGSAMQYLQGKG 250
Query: 215 ILLKTLSHVTSLDLSIVSHTMLPFRK-------ISLDVTIIAQMGDNYKITLKD 261
+ L +S T++ + + PF K +L TI+A + +T+KD
Sbjct: 251 LCLMPISLATTISTATCP-SRSPFVKDTGVPLSPNLSTTIVANGNGSSLVTVKD 303