Miyakogusa Predicted Gene
- Lj3g3v0028550.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0028550.1 Non Chatacterized Hit- tr|I1HYJ0|I1HYJ0_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,36.56,5e-19,zf-RanBP,Zinc finger, RanBP2-type; Zinc finger
domain,Zinc finger, RanBP2-type; Ran BP2/NZF zinc fin,CUFF.40209.1
(140 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G26695.1 | Symbols: | Ran BP2/NZF zinc finger-like superfami... 192 6e-50
AT3G15680.1 | Symbols: | Ran BP2/NZF zinc finger-like superfami... 111 1e-25
AT5G25490.1 | Symbols: | Ran BP2/NZF zinc finger-like superfami... 104 2e-23
AT2G17975.1 | Symbols: | zinc finger (Ran-binding) family prote... 57 4e-09
AT1G48570.1 | Symbols: | zinc finger (Ran-binding) family prote... 49 2e-06
>AT2G26695.1 | Symbols: | Ran BP2/NZF zinc finger-like superfamily
protein | chr2:11365275-11365789 FORWARD LENGTH=138
Length = 138
Score = 192 bits (488), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 88/138 (63%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Query: 1 MSWSGGDWMCGACQHVNFKKREQCQSCAYPKYGGPDPATYRYNRTETLAGDWYCSAMNCG 60
MSW+GGDW+CGACQH NFKKRE CQ C YPK+GG D +TY YNRTE +AGDWYC A+NCG
Sbjct: 1 MSWTGGDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRTEVMAGDWYCGALNCG 60
Query: 61 AHNYASRSNCYRCGTMRDDXXXXXXXXXXXXXXXXXDCSFPPGWKSGDWICPRIGCGVHN 120
+HNYASR++CYRCG ++ + + PPGWK+GDW+CPR+GCGVHN
Sbjct: 61 SHNYASRTSCYRCGMIKVE-YTEQYYGAQMVAYGNDGAACPPGWKTGDWVCPRVGCGVHN 119
Query: 121 YASRAECFKCKMPRDFGG 138
YASRAECFKCK RD+GG
Sbjct: 120 YASRAECFKCKTTRDYGG 137
>AT3G15680.1 | Symbols: | Ran BP2/NZF zinc finger-like superfamily
protein | chr3:5315437-5316048 FORWARD LENGTH=164
Length = 164
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 82/154 (53%), Gaps = 23/154 (14%)
Query: 6 GDWMCGACQHVNFKKREQCQSCA-------------YPKYGGPDPATYRYNR-TETLAGD 51
GDW C +C H+NF++R+ CQ C + +GG + + + ++ GD
Sbjct: 5 GDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDVRPGD 64
Query: 52 WYCSAMNCGAHNYASRSNCYRCGTMRDDXXXXXXXXXXXX-XXXXXDC--SFPPG----- 103
WYC+ NCG HN+ASRS C++CGT +D+ D S PG
Sbjct: 65 WYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPGNGGRS 124
Query: 104 -WKSGDWICPRIGCGVHNYASRAECFKCKMPRDF 136
WKSGDWIC RIGC HN+ASR ECF+C PRDF
Sbjct: 125 SWKSGDWICTRIGCNEHNFASRMECFRCNAPRDF 158
>AT5G25490.1 | Symbols: | Ran BP2/NZF zinc finger-like superfamily
protein | chr5:8876639-8877339 FORWARD LENGTH=170
Length = 170
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 37/167 (22%)
Query: 6 GDWMCGACQHVNFKKREQCQSCAYPKYGG------------PDPATYRYNR-TETLAGDW 52
GDW C C H+NF++R+ CQ C P+ GG P +++ +N + GDW
Sbjct: 5 GDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVRPGDW 64
Query: 53 YCSAMNCGAHNYASRSNCYRCGTMRDDXXXXXXXXXXXXXXXXXDCSFPP---------- 102
YC+ +CG HN+A+RS+C++CG +D+ D + P
Sbjct: 65 YCNLGDCGTHNFANRSSCFKCGAAKDE----FSCSSAAATTGFMDMNVGPRRGLFGFGGS 120
Query: 103 ----------GWKSGDWICPRIGCGVHNYASRAECFKCKMPRDFGGE 139
WKSGDWICPR GC HN+ASR+ECF+C P++ E
Sbjct: 121 SSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKELATE 167
>AT2G17975.1 | Symbols: | zinc finger (Ran-binding) family protein
| chr2:7822238-7823970 REVERSE LENGTH=268
Length = 268
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 57/149 (38%), Gaps = 30/149 (20%)
Query: 6 GDWMCGACQHVNFKKREQCQSCAYPKYGGPDPATYRYNRTETLAGDWYCSAMNCGAHNYA 65
GDW C C++ N+ R C C P+ D T ++ GDW C+ C +NYA
Sbjct: 7 GDWECLGCRNRNYAFRSFCNRCKQPRLIM-DNNTSPNSKWLPRIGDWICTG--CTNNNYA 63
Query: 66 SRSNCYRCGTMRDDXXXXXXX------------------------XXXXXXXXXXDCSFP 101
SR C +CG ++ S
Sbjct: 64 SREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQPGSLLAFSNATNQASVH 123
Query: 102 PGWKSGDWICPRIGCGVHNYASRAECFKC 130
W+SGDWIC CG HNY+SR +C KC
Sbjct: 124 KEWRSGDWIC---RCGFHNYSSRIQCKKC 149
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 55/142 (38%), Gaps = 10/142 (7%)
Query: 3 WSGGDWMCGACQHVNFKKREQCQSCAYPKYGGPDPATYRYNRTETLAGDWYCSAMNCGAH 62
W GDW+C C N+ R QC+ C P + +E LA +W +N G
Sbjct: 126 WRSGDWIC-RCGFHNYSSRIQCKKC---NEIAPLALGTKRLASEALAHEWDSKRLNQGYT 181
Query: 63 NYASRSNCYRC----GTMRDDXXXXXXXXXXXXXXXXXDCSFPPGWKSGDWICPRIGCGV 118
+ ++S Y R W+ GDW+C C
Sbjct: 182 SMQTQSAIYASFPGMSLGRVSNWQLPLPFLQQHSTPALLGMGVKQWRDGDWMC--TNCKN 239
Query: 119 HNYASRAECFKCKMPRDFGGED 140
HNYASRAEC +CK RD +D
Sbjct: 240 HNYASRAECNRCKTTRDILDQD 261
>AT1G48570.1 | Symbols: | zinc finger (Ran-binding) family protein
| chr1:17955455-17957661 REVERSE LENGTH=455
Length = 455
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 46/126 (36%), Gaps = 30/126 (23%)
Query: 6 GDWMCGACQHVNFKKREQCQSCAYPKYGGPDPATYRYNRTETLAGDWYCSAMNCGAHNYA 65
GDW+C C +NF + + C C K GP T N E GDW C+ CG N+A
Sbjct: 338 GDWLCPECSFLNFTRNQSCLKC---KAKGPK-KTSMVNIVEMKKGDWNCTG--CGYMNFA 391
Query: 66 SRSNCYRCGTMRDDXXXXXXXXXXXXXXXXXDCSFPPGWKSGDWICPRIGCGVHNYASRA 125
S C C R + GDW CP C N+
Sbjct: 392 SNKQCRECREQRHKTLA----------------------EPGDWECP--SCDFVNFRRND 427
Query: 126 ECFKCK 131
C KC+
Sbjct: 428 ACKKCE 433