Miyakogusa Predicted Gene

Lj3g3v0012340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0012340.1 CUFF.40186.1
         (77 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14615.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    82   6e-17
AT1G52825.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    72   1e-13

>AT4G14615.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: 24 plant structures; EXPRESSED
          DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
          Protein of unknown function DUF2346
          (InterPro:IPR018625); BEST Arabidopsis thaliana protein
          match is: unknown protein (TAIR:AT1G52825.1); Has 30201
          Blast hits to 17322 proteins in 780 species: Archae -
          12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
          Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
          (source: NCBI BLink). | chr4:8383842-8384814 FORWARD
          LENGTH=76
          Length = 76

 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 1  MSSLGTSKGILEIAKFGVYVTVPIVLMYTFANYTNNYLHKFIGKKSYVEYXXXXXXXXXX 60
          MSS+GTSKG+LEI KFGVYV VPIVLMYTFAN + N + KF+G +SYV Y          
Sbjct: 1  MSSVGTSKGVLEIVKFGVYVAVPIVLMYTFANNSTN-IKKFMGNRSYVVYPEEAPRPPSP 59

Query: 61 XXXXXKARELAHKRN 75
                ARELA K+N
Sbjct: 60 DELREMARELARKKN 74


>AT1G52825.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; CONTAINS InterPro DOMAIN/s: Protein of unknown
          function DUF2346 (InterPro:IPR018625); BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT4G14615.1); Has 52 Blast hits to 49 proteins in
          19 species: Archae - 0; Bacteria - 0; Metazoa - 0;
          Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes -
          1 (source: NCBI BLink). | chr1:19670658-19670894
          REVERSE LENGTH=78
          Length = 78

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 42/50 (84%), Gaps = 1/50 (2%)

Query: 1  MSSLGTSKGILEIAKFGVYVTVPIVLMYTFANYTNNYLHKFIGKKSYVEY 50
          MSS+GTSKGILEIAKFGVYV VPIVL+YTFAN + N + KF+G  SYV Y
Sbjct: 1  MSSVGTSKGILEIAKFGVYVAVPIVLIYTFANNSTN-IKKFMGNHSYVVY 49