Miyakogusa Predicted Gene
- Lj3g3v0012330.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0012330.1 tr|B9HK79|B9HK79_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_563484 PE=4
SV=1,82.98,0.00000000000003,ACT-like,NULL,CUFF.40191.1
(290 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G16880.1 | Symbols: | uridylyltransferase-related | chr1:577... 394 e-110
AT5G04740.1 | Symbols: | ACT domain-containing protein | chr5:1... 285 3e-77
AT1G16880.2 | Symbols: | uridylyltransferase-related | chr1:577... 225 2e-59
AT5G04740.2 | Symbols: | ACT domain-containing protein | chr5:1... 156 1e-38
AT3G01990.1 | Symbols: ACR6 | ACT domain repeat 6 | chr3:330256-... 66 4e-11
AT1G69040.1 | Symbols: ACR4 | ACT domain repeat 4 | chr1:2595819... 56 3e-08
AT1G69040.2 | Symbols: ACR4 | ACT domain repeat 4 | chr1:2595784... 56 3e-08
AT2G03730.2 | Symbols: ACR5 | ACT domain repeat 5 | chr2:1137820... 52 6e-07
AT2G03730.1 | Symbols: ACR5 | ACT domain repeat 5 | chr2:1137820... 52 6e-07
>AT1G16880.1 | Symbols: | uridylyltransferase-related |
chr1:5773796-5776125 FORWARD LENGTH=290
Length = 290
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/295 (67%), Positives = 245/295 (83%), Gaps = 12/295 (4%)
Query: 3 VAMAACSLGLHLCADNSLRALE-KTIWGAPVL--KVSSISDTTKPCYILHKTRLSSSRIT 59
+AMA+ S G LC ++ +L + GA L + + KP L + RLS+ +I
Sbjct: 1 MAMASAS-GSALCFTDASSSLALRRDCGALCLPPRTVTFGFVDKPLVNLERLRLSTLKI- 58
Query: 60 IIPRATAVTDVEGGNQD----ETDTVPTPVVIIDQDSDTDATVVEITFGDRLGALLDTMN 115
RA+ T VE G Q+ ++D VPTPVVIIDQDSD DATV+E+TFGDRLGALLDTMN
Sbjct: 59 ---RASNATAVENGKQEGSAADSDKVPTPVVIIDQDSDPDATVLEVTFGDRLGALLDTMN 115
Query: 116 ALKNLGLNVVKANVYLDSSGKHNKFAITKADTGRKVDDPELLEAIRMTILNNMIQYHPES 175
ALKNLGLNVVKANVYLDSSGKHNKFAIT+AD+GRKV+DPELLEAIR+T++NN++++HPES
Sbjct: 116 ALKNLGLNVVKANVYLDSSGKHNKFAITRADSGRKVEDPELLEAIRLTVINNLLEFHPES 175
Query: 176 SAQLALGAAFGLVPPKEQVDVDIATHLTISDDGPDRSLLYVETADRPGLLLDLVQIITDI 235
S+QLA+GAAFG++PP E +DVDIATH+TI DDGPDRSLL++E+ADRPGLL++LV+II+DI
Sbjct: 176 SSQLAMGAAFGVLPPTEPIDVDIATHITIEDDGPDRSLLFIESADRPGLLVELVKIISDI 235
Query: 236 NIAVESGEFDTEGLLAKAKFHVSYKGKAIIKPLQEVLANSLRYYLRRPSTEESSF 290
++AVESGEFDTEGLLAK KFHVSY+ KA+IKPLQ+VLANSLRY+LRRPST+ESSF
Sbjct: 236 SVAVESGEFDTEGLLAKVKFHVSYRNKALIKPLQQVLANSLRYFLRRPSTDESSF 290
>AT5G04740.1 | Symbols: | ACT domain-containing protein |
chr5:1368713-1371391 REVERSE LENGTH=301
Length = 301
Score = 285 bits (729), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 126/217 (58%), Positives = 179/217 (82%)
Query: 74 NQDETDTVPTPVVIIDQDSDTDATVVEITFGDRLGALLDTMNALKNLGLNVVKANVYLDS 133
++D+ D VP P+V+IDQD+D +AT+V+++FG+RLGAL+DTM ALK+LGL+V+K V +
Sbjct: 85 SEDDDDVVPMPMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEG 144
Query: 134 SGKHNKFAITKADTGRKVDDPELLEAIRMTILNNMIQYHPESSAQLALGAAFGLVPPKEQ 193
S K KF+ITK DTGRKV+DP+LLE IR+TI+NN+++YHPE S QLA+G FG+ P+++
Sbjct: 145 SIKQTKFSITKRDTGRKVEDPDLLEQIRLTIINNLLKYHPECSEQLAMGETFGIKAPEKK 204
Query: 194 VDVDIATHLTISDDGPDRSLLYVETADRPGLLLDLVQIITDINIAVESGEFDTEGLLAKA 253
+DVDIATH+ + +DGP RSLL +ETADRPGL++++++++ D+NI VES E DTEGL+AK
Sbjct: 205 IDVDIATHIHVKEDGPKRSLLVIETADRPGLVVEMIKVMADVNIDVESAEIDTEGLVAKD 264
Query: 254 KFHVSYKGKAIIKPLQEVLANSLRYYLRRPSTEESSF 290
KFHVSY+G+A+ + L +VL N LRY+LRRP T+ S+
Sbjct: 265 KFHVSYQGQALNRSLSQVLVNCLRYFLRRPETDIDSY 301
>AT1G16880.2 | Symbols: | uridylyltransferase-related |
chr1:5773796-5775272 FORWARD LENGTH=213
Length = 213
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/156 (70%), Positives = 133/156 (85%), Gaps = 8/156 (5%)
Query: 43 KPCYILHKTRLSSSRITIIPRATAVTDVEGGNQD----ETDTVPTPVVIIDQDSDTDATV 98
KP L + RLS+ +I RA+ T VE G Q+ ++D VPTPVVIIDQDSD DATV
Sbjct: 43 KPLVNLERLRLSTLKI----RASNATAVENGKQEGSAADSDKVPTPVVIIDQDSDPDATV 98
Query: 99 VEITFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAITKADTGRKVDDPELLE 158
+E+TFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAIT+AD+GRKV+DPELLE
Sbjct: 99 LEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAITRADSGRKVEDPELLE 158
Query: 159 AIRMTILNNMIQYHPESSAQLALGAAFGLVPPKEQV 194
AIR+T++NN++++HPESS+QLA+GAAFG++PP E V
Sbjct: 159 AIRLTVINNLLEFHPESSSQLAMGAAFGVLPPTEPV 194
>AT5G04740.2 | Symbols: | ACT domain-containing protein |
chr5:1368713-1371391 REVERSE LENGTH=200
Length = 200
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 96/119 (80%)
Query: 172 HPESSAQLALGAAFGLVPPKEQVDVDIATHLTISDDGPDRSLLYVETADRPGLLLDLVQI 231
+PE S QLA+G FG+ P++++DVDIATH+ + +DGP RSLL +ETADRPGL+++++++
Sbjct: 82 YPECSEQLAMGETFGIKAPEKKIDVDIATHIHVKEDGPKRSLLVIETADRPGLVVEMIKV 141
Query: 232 ITDINIAVESGEFDTEGLLAKAKFHVSYKGKAIIKPLQEVLANSLRYYLRRPSTEESSF 290
+ D+NI VES E DTEGL+AK KFHVSY+G+A+ + L +VL N LRY+LRRP T+ S+
Sbjct: 142 MADVNIDVESAEIDTEGLVAKDKFHVSYQGQALNRSLSQVLVNCLRYFLRRPETDIDSY 200
>AT3G01990.1 | Symbols: ACR6 | ACT domain repeat 6 |
chr3:330256-332066 FORWARD LENGTH=433
Length = 433
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 32/201 (15%)
Query: 84 PVVIIDQDSDTDATVVEITFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAIT 143
P V+ID ++ DATV+++ ++ G LL+ + L ++ L + KA + D + F +
Sbjct: 16 PRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYISSDGGWFMDVFKVI 75
Query: 144 KADTGRKVDDPELLEAIRMTILNNMIQYHPESSAQLALGAAFGLVPPKEQVDVDIATHLT 203
D G K+ D ++L+ I+ I +N + P L ++ G++P E +++A
Sbjct: 76 DQD-GNKIRDTQVLDYIQKRIESNAGWFIP------PLRSSVGVMPTDEYTSIELA---- 124
Query: 204 ISDDGPDRSLLYVETADRPGLLLDLVQIITDINIAVESGEFDTEGLLAKAKFHVSYKG-- 261
DRPGLL ++ ++TD++ V + E T A A HV+
Sbjct: 125 --------------GTDRPGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNSTH 170
Query: 262 KAIIKP-----LQEVLANSLR 277
AI P ++E+L N +R
Sbjct: 171 SAITDPIRLSTIKELLCNVVR 191
>AT1G69040.1 | Symbols: ACR4 | ACT domain repeat 4 |
chr1:25958196-25960079 FORWARD LENGTH=451
Length = 451
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 27/175 (15%)
Query: 84 PVVIIDQDSDTDATVVEITFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAIT 143
P V+ID DS ATV+ + + G LL+ + L +L L + KA + D + F +T
Sbjct: 21 PRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYISSDGGWFMDVFNVT 80
Query: 144 KADTGRKVDDPELLEAIRMTILNNMIQYHPESSAQLALGAAFGLVPPKEQVDVDIATHLT 203
D G KV D +L+ I+ ++ PE+ ++ + G++P
Sbjct: 81 DQD-GNKVTDEVVLDYIQKSL-------GPEACFSTSM-RSVGVIP-------------- 117
Query: 204 ISDDGPDRSLLYVETADRPGLLLDLVQIITDINIAVESGEFDTEGLLAKAKFHVS 258
D +++ + DRPGLL +L ++T + +V + E T A A V+
Sbjct: 118 ----STDSTVIELTGCDRPGLLSELSAVLTHLKCSVLNAEIWTHNTRAAAVMQVT 168
>AT1G69040.2 | Symbols: ACR4 | ACT domain repeat 4 |
chr1:25957843-25960079 FORWARD LENGTH=455
Length = 455
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 27/175 (15%)
Query: 84 PVVIIDQDSDTDATVVEITFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAIT 143
P V+ID DS ATV+ + + G LL+ + L +L L + KA + D + F +T
Sbjct: 25 PRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYISSDGGWFMDVFNVT 84
Query: 144 KADTGRKVDDPELLEAIRMTILNNMIQYHPESSAQLALGAAFGLVPPKEQVDVDIATHLT 203
D G KV D +L+ I+ ++ PE+ ++ + G++P
Sbjct: 85 DQD-GNKVTDEVVLDYIQKSL-------GPEACFSTSM-RSVGVIP-------------- 121
Query: 204 ISDDGPDRSLLYVETADRPGLLLDLVQIITDINIAVESGEFDTEGLLAKAKFHVS 258
D +++ + DRPGLL +L ++T + +V + E T A A V+
Sbjct: 122 ----STDSTVIELTGCDRPGLLSELSAVLTHLKCSVLNAEIWTHNTRAAAVMQVT 172
>AT2G03730.2 | Symbols: ACR5 | ACT domain repeat 5 |
chr2:1137820-1139809 REVERSE LENGTH=456
Length = 456
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 28/180 (15%)
Query: 81 VPTPVVIIDQDSDTDATVVEITFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKF 140
V P V+ID + D TV+++ ++ G LL+ + L L L + KA + D + F
Sbjct: 22 VNPPRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYISSDGGWFMDVF 81
Query: 141 AITKADTGRKVDDPELLEAIRMTILNNMIQYHPESSAQL--ALGAAFGLVPPKEQVDVDI 198
+T D G KV D +LE IR ++ P+ S+ ++ + G+ K+ VD
Sbjct: 82 NVTDQD-GNKVTDEIVLEYIRKSL-------GPDESSCFSPSMRSTIGV---KQSVDY-- 128
Query: 199 ATHLTISDDGPDRSLLYVETADRPGLLLDLVQIITDINIAVESGEFDTEGLLAKAKFHVS 258
+++ + DRPGLL +L ++ D+ V + E T A A V+
Sbjct: 129 -------------TVVELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVT 175
>AT2G03730.1 | Symbols: ACR5 | ACT domain repeat 5 |
chr2:1137820-1139809 REVERSE LENGTH=456
Length = 456
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 28/180 (15%)
Query: 81 VPTPVVIIDQDSDTDATVVEITFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKF 140
V P V+ID + D TV+++ ++ G LL+ + L L L + KA + D + F
Sbjct: 22 VNPPRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYISSDGGWFMDVF 81
Query: 141 AITKADTGRKVDDPELLEAIRMTILNNMIQYHPESSAQL--ALGAAFGLVPPKEQVDVDI 198
+T D G KV D +LE IR ++ P+ S+ ++ + G+ K+ VD
Sbjct: 82 NVTDQD-GNKVTDEIVLEYIRKSL-------GPDESSCFSPSMRSTIGV---KQSVDY-- 128
Query: 199 ATHLTISDDGPDRSLLYVETADRPGLLLDLVQIITDINIAVESGEFDTEGLLAKAKFHVS 258
+++ + DRPGLL +L ++ D+ V + E T A A V+
Sbjct: 129 -------------TVVELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVT 175