Miyakogusa Predicted Gene

Lj3g3v0012280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0012280.1 tr|Q9ZUX6|Q9ZUX6_ARATH Nucleolar matrix
protein-related OS=Arabidopsis thaliana GN=At2g27750 PE=2
SV,47.76,2e-19,seg,NULL; SUBFAMILY NOT NAMED,NULL; SURFEIT LOCUS
PROTEIN 6,Surfeit locus 6; SURF6,Surfeit locus 6,gene.g44795.t1.1
         (169 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05210.1 | Symbols:  | Surfeit locus protein 6 | chr5:1548198...    83   1e-16
AT5G05210.2 | Symbols:  | Surfeit locus protein 6 | chr5:1548398...    83   1e-16
AT2G27750.1 | Symbols:  | Surfeit locus protein 6 | chr2:1182391...    70   1e-12

>AT5G05210.1 | Symbols:  | Surfeit locus protein 6 |
           chr5:1548198-1549534 FORWARD LENGTH=386
          Length = 386

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 77/137 (56%), Gaps = 10/137 (7%)

Query: 33  NKRKRGNATDDLAV---------KVKKDAADTSKELVFGNVILQDEEIQGKKKIKVSXXX 83
           NKRKR   +++  V         K K D  + +K+L FG V + D+E  GK+K K     
Sbjct: 202 NKRKRDTVSEEKTVEEIKSADKGKGKLDVEEAAKDLTFGYVKIDDDEEHGKEKKKRRLSK 261

Query: 84  XXXXXXXXXXXXXXXXXXX-XAFARKQSWEAALNRASGIKVHDDPKLVQKSMKKEQKRRE 142
                                  A+K SW+AA +RA+GIKVHDDPKL+++S+ K++KR+E
Sbjct: 262 ARELERAMKLEAAKKDPEKGDVIAKKHSWKAATSRAAGIKVHDDPKLLKQSIHKDKKRQE 321

Query: 143 KNAEKWKERVQTRDQLK 159
           KNAEKWKER++ + + K
Sbjct: 322 KNAEKWKERIEGQQKFK 338


>AT5G05210.2 | Symbols:  | Surfeit locus protein 6 |
           chr5:1548398-1549534 FORWARD LENGTH=378
          Length = 378

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 77/137 (56%), Gaps = 10/137 (7%)

Query: 33  NKRKRGNATDDLAV---------KVKKDAADTSKELVFGNVILQDEEIQGKKKIKVSXXX 83
           NKRKR   +++  V         K K D  + +K+L FG V + D+E  GK+K K     
Sbjct: 194 NKRKRDTVSEEKTVEEIKSADKGKGKLDVEEAAKDLTFGYVKIDDDEEHGKEKKKRRLSK 253

Query: 84  XXXXXXXXXXXXXXXXXXX-XAFARKQSWEAALNRASGIKVHDDPKLVQKSMKKEQKRRE 142
                                  A+K SW+AA +RA+GIKVHDDPKL+++S+ K++KR+E
Sbjct: 254 ARELERAMKLEAAKKDPEKGDVIAKKHSWKAATSRAAGIKVHDDPKLLKQSIHKDKKRQE 313

Query: 143 KNAEKWKERVQTRDQLK 159
           KNAEKWKER++ + + K
Sbjct: 314 KNAEKWKERIEGQQKFK 330


>AT2G27750.1 | Symbols:  | Surfeit locus protein 6 |
           chr2:11823916-11824461 REVERSE LENGTH=181
          Length = 181

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 12/134 (8%)

Query: 30  FQGNKRKRGNATDDLAVKVKKDAADTSKELVFGNVILQD-EEIQGK--KKIKVSXXXXXX 86
            Q NKRKR +  +           +  K+L +G + + D +EI GK  KK +VS      
Sbjct: 23  LQKNKRKRDSGLNVFE--------EVVKDLTYGYMKIGDGDEIYGKHRKKKRVSKAKELE 74

Query: 87  XXXXXXXXXXXXXXXXXAFARKQSWEAALNRASGIKVHDDPKLVQKSMKKEQKRREKNAE 146
                              A+  SW+AA++RA+GIK+HDDPK ++K + KE K REKN E
Sbjct: 75  MAMTLEALKKDQEKGD-IVAKNHSWQAAISRAAGIKIHDDPKRLKKRIHKETKMREKNTE 133

Query: 147 KWKERVQTRDQLKA 160
           KWKERV  + + +A
Sbjct: 134 KWKERVDVQQKFRA 147