Miyakogusa Predicted Gene

Lj3g3v0002180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0002180.1 Non Chatacterized Hit- tr|K4BLR8|K4BLR8_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,44.19,0.00000000000003,ZF_RING_2,Zinc finger, RING-type;
seg,NULL; no description,Zinc finger, RING/FYVE/PHD-type,CUFF.40174.1
         (726 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57820.1 | Symbols:  | zinc ion binding | chr5:23428601-23429...    59   1e-08
AT1G75400.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    54   4e-07
AT2G21500.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    53   6e-07
AT2G21500.2 | Symbols:  | RING/U-box superfamily protein | chr2:...    53   6e-07

>AT5G57820.1 | Symbols:  | zinc ion binding | chr5:23428601-23429165
           FORWARD LENGTH=161
          Length = 161

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 8/96 (8%)

Query: 635 QRLMNQIIQSTPATAHNYIKY-KDQTP-----EPLGYKCMLCKRDLSYVPEGPISQPPTP 688
           Q+L+  I + TP        + +D        E +G+ C LC+RDL+  PE P +     
Sbjct: 63  QQLLQMITKKTPQDPSKVSSHIRDDLDMVFVLEEVGHSCDLCQRDLAKDPERPNASLSGL 122

Query: 689 PAAAVLSCGHTFHQHCLEKMT--PDGQSKDPPCIPC 722
             A VLSCGH +H  CL   T   D  SKDP CI C
Sbjct: 123 QEACVLSCGHVYHFKCLRGTTLDIDNHSKDPSCIFC 158


>AT1G75400.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:28297609-28299464 FORWARD LENGTH=455
          Length = 455

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 25/38 (65%)

Query: 689 PAAAVLSCGHTFHQHCLEKMTPDGQSKDPPCIPCALGE 726
           P AAVL+CGH +H  CLE MT D +  DP C  C +GE
Sbjct: 300 PIAAVLACGHVYHAECLETMTTDIEKYDPACPICTIGE 337


>AT2G21500.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:9207965-9209575 REVERSE LENGTH=421
          Length = 421

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 25/37 (67%)

Query: 690 AAAVLSCGHTFHQHCLEKMTPDGQSKDPPCIPCALGE 726
            AA+L+CGH +H  CLE+MTP+    DP C  C LGE
Sbjct: 277 VAAILACGHVYHSECLEQMTPEIDKFDPSCPICTLGE 313


>AT2G21500.2 | Symbols:  | RING/U-box superfamily protein |
           chr2:9207965-9209575 REVERSE LENGTH=421
          Length = 421

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 25/37 (67%)

Query: 690 AAAVLSCGHTFHQHCLEKMTPDGQSKDPPCIPCALGE 726
            AA+L+CGH +H  CLE+MTP+    DP C  C LGE
Sbjct: 277 VAAILACGHVYHSECLEQMTPEIDKFDPSCPICTLGE 313