Miyakogusa Predicted Gene

Lj3g3v0002100.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0002100.1 tr|A9TGW3|A9TGW3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_145447,46.9,4e-19,no description,Heat shock protein
DnaJ, N-terminal; DnaJ,Heat shock protein DnaJ, N-terminal;
DNAJ_2,CUFF.40168.1
         (139 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80920.1 | Symbols: J8 | Chaperone DnaJ-domain superfamily pr...   131   2e-31
AT1G72070.1 | Symbols:  | Chaperone DnaJ-domain superfamily prot...    63   6e-11
AT5G59610.1 | Symbols:  | Chaperone DnaJ-domain superfamily prot...    59   1e-09
AT5G59610.2 | Symbols:  | Chaperone DnaJ-domain superfamily prot...    53   6e-08
AT3G62600.1 | Symbols: ATERDJ3B, ERDJ3B | DNAJ heat shock family...    51   3e-07
AT1G80030.2 | Symbols:  | Molecular chaperone Hsp40/DnaJ family ...    50   4e-07
AT1G80030.3 | Symbols:  | Molecular chaperone Hsp40/DnaJ family ...    50   4e-07
AT1G80030.1 | Symbols:  | Molecular chaperone Hsp40/DnaJ family ...    50   4e-07
AT2G41000.1 | Symbols:  | Chaperone DnaJ-domain superfamily prot...    50   6e-07
AT2G41000.2 | Symbols:  | Chaperone DnaJ-domain superfamily prot...    49   8e-07
AT5G01390.3 | Symbols:  | DNAJ heat shock family protein | chr5:...    49   1e-06
AT5G01390.4 | Symbols:  | DNAJ heat shock family protein | chr5:...    49   1e-06
AT1G59725.1 | Symbols:  | DNAJ heat shock family protein | chr1:...    49   1e-06
AT5G01390.1 | Symbols:  | DNAJ heat shock family protein | chr5:...    49   1e-06
AT5G01390.2 | Symbols:  | DNAJ heat shock family protein | chr5:...    49   1e-06
AT3G17830.1 | Symbols:  | Molecular chaperone Hsp40/DnaJ family ...    47   3e-06
AT4G28480.2 | Symbols:  | DNAJ heat shock family protein | chr4:...    47   3e-06
AT4G28480.1 | Symbols:  | DNAJ heat shock family protein | chr4:...    47   3e-06
AT3G08910.1 | Symbols:  | DNAJ heat shock family protein | chr3:...    47   4e-06
AT2G20560.1 | Symbols:  | DNAJ heat shock family protein | chr2:...    47   6e-06
AT2G22360.1 | Symbols:  | DNAJ heat shock family protein | chr2:...    47   6e-06

>AT1G80920.1 | Symbols: J8 | Chaperone DnaJ-domain superfamily
           protein | chr1:30403863-30404549 REVERSE LENGTH=163
          Length = 163

 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 76/104 (73%), Gaps = 3/104 (2%)

Query: 38  MDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSKCGVQFHHINEAYDVVMANLRGE 97
           MD YKTL+++P +S+ EVKKAFR LA +YHPDVC+GS CGVQF  INEAYD+V+  ++ +
Sbjct: 54  MDPYKTLKIRPDSSEYEVKKAFRQLAKKYHPDVCRGSNCGVQFQTINEAYDIVLKQIKNQ 113

Query: 98  SNTSLMYEAG--IDEAIKGVNDQDLEDLWEEWMGWEGAGIRDYS 139
              +  +E     DE + G+ND D  D WEEWMGWEGAG RDYS
Sbjct: 114 MEGTEEFEPFDVYDEGLNGMNDPDC-DTWEEWMGWEGAGTRDYS 156


>AT1G72070.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein
           | chr1:27118851-27119608 REVERSE LENGTH=126
          Length = 126

 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 51/102 (50%), Gaps = 16/102 (15%)

Query: 32  CCSSSLMDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSKCGVQFHHINEAYDVV- 90
           CC S  +  Y  L + P ASQTEVK+AF+ LAL+YHPDV +G      F  I  AY+ + 
Sbjct: 32  CCLSPDLSHYTVLGLTPLASQTEVKRAFKRLALKYHPDVHKGQ--DKDFKEIKSAYECLM 89

Query: 91  MANLRGESNTSLMYEAGIDEAIKGVNDQDLEDLWEEWMGWEG 132
               + E    +     IDE             WEEWMG+EG
Sbjct: 90  QKFKKEEEEMEITEMGEIDE-------------WEEWMGFEG 118


>AT5G59610.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein
           | chr5:24013165-24014954 FORWARD LENGTH=268
          Length = 268

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 16/125 (12%)

Query: 23  ERNHNRVMICCSSSLMDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSKCGVQFHH 82
           +R  NR+ +  + S    Y+ L V P A+  ++K+A+R LAL+YHPDV + +    +F  
Sbjct: 59  QRRRNRIFVTRARS--SPYEILGVSPSATPQDIKRAYRKLALKYHPDVNKEANAQEKFLK 116

Query: 83  INEAYDVVM-----------ANLRGESN--TSLMYEAGIDEAIKGVNDQDLEDLWEEWMG 129
           I  AY  ++           +   G S   TS    + ++E   G+ D   +DL EE+  
Sbjct: 117 IKHAYTTLINSDSRRKYGSDSRATGSSTGQTSRKGNSQVEEDFYGLGDF-FKDLQEEYKN 175

Query: 130 WEGAG 134
           WE + 
Sbjct: 176 WEASA 180


>AT5G59610.2 | Symbols:  | Chaperone DnaJ-domain superfamily protein
           | chr5:24013165-24014889 FORWARD LENGTH=256
          Length = 256

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 23  ERNHNRVMICCSSSLMDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSKCGVQFHH 82
           +R  NR+ +  + S    Y+ L V P A+  ++K+A+R LAL+YHPDV + +    +F  
Sbjct: 59  QRRRNRIFVTRARS--SPYEILGVSPSATPQDIKRAYRKLALKYHPDVNKEANAQEKFLK 116

Query: 83  INEAYDVVM 91
           I  AY  ++
Sbjct: 117 IKHAYTTLI 125


>AT3G62600.1 | Symbols: ATERDJ3B, ERDJ3B | DNAJ heat shock family
          protein | chr3:23151038-23153346 REVERSE LENGTH=346
          Length = 346

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 41 YKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSKCGV-QFHHINEAYDVV 90
          Y  L+V  GAS  ++K+A+R LAL+YHPD  QG++    +F  IN AY+V+
Sbjct: 28 YDVLQVPKGASDEQIKRAYRKLALKYHPDKNQGNEEATRKFAEINNAYEVL 78


>AT1G80030.2 | Symbols:  | Molecular chaperone Hsp40/DnaJ family
           protein | chr1:30105398-30108873 REVERSE LENGTH=500
          Length = 500

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 6/116 (5%)

Query: 22  RERNHNRVMICCSSSLMDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSKCGVQFH 81
           R R    +++  +S   D Y TL V   A+  E+K A+R LA QYHPDV +      +F 
Sbjct: 60  RNRRGRSLVVFATSG--DYYATLGVSKSANNKEIKAAYRRLARQYHPDVNKEPGATEKFK 117

Query: 82  HINEAYDVVMANLRGESNTSLMYEAGIDEAIKGVN---DQDLEDLWEEWMGWEGAG 134
            I+ AY+ V+++ +  +      EAG+   + G +     +  DL+E + G    G
Sbjct: 118 EISAAYE-VLSDEQKRALYDQYGEAGVKSTVGGASGPYTSNPFDLFETFFGASMGG 172


>AT1G80030.3 | Symbols:  | Molecular chaperone Hsp40/DnaJ family
           protein | chr1:30105398-30108873 REVERSE LENGTH=500
          Length = 500

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 6/116 (5%)

Query: 22  RERNHNRVMICCSSSLMDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSKCGVQFH 81
           R R    +++  +S   D Y TL V   A+  E+K A+R LA QYHPDV +      +F 
Sbjct: 60  RNRRGRSLVVFATSG--DYYATLGVSKSANNKEIKAAYRRLARQYHPDVNKEPGATEKFK 117

Query: 82  HINEAYDVVMANLRGESNTSLMYEAGIDEAIKGVN---DQDLEDLWEEWMGWEGAG 134
            I+ AY+ V+++ +  +      EAG+   + G +     +  DL+E + G    G
Sbjct: 118 EISAAYE-VLSDEQKRALYDQYGEAGVKSTVGGASGPYTSNPFDLFETFFGASMGG 172


>AT1G80030.1 | Symbols:  | Molecular chaperone Hsp40/DnaJ family
           protein | chr1:30105398-30108873 REVERSE LENGTH=500
          Length = 500

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 6/116 (5%)

Query: 22  RERNHNRVMICCSSSLMDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSKCGVQFH 81
           R R    +++  +S   D Y TL V   A+  E+K A+R LA QYHPDV +      +F 
Sbjct: 60  RNRRGRSLVVFATSG--DYYATLGVSKSANNKEIKAAYRRLARQYHPDVNKEPGATEKFK 117

Query: 82  HINEAYDVVMANLRGESNTSLMYEAGIDEAIKGVN---DQDLEDLWEEWMGWEGAG 134
            I+ AY+ V+++ +  +      EAG+   + G +     +  DL+E + G    G
Sbjct: 118 EISAAYE-VLSDEQKRALYDQYGEAGVKSTVGGASGPYTSNPFDLFETFFGASMGG 172


>AT2G41000.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein
           | chr2:17111673-17113247 FORWARD LENGTH=184
          Length = 184

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 11/79 (13%)

Query: 37  LMDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGS------KCGVQFHHINEAYDVV 90
           ++D Y+ L V   A++ EVK AFR LA++YHPD    S         V+F  ++EAY+V+
Sbjct: 1   MVDHYQVLGVTRNATKKEVKDAFRRLAIKYHPDKHAQSPEHVRHNATVRFKLVSEAYEVL 60

Query: 91  MANLRGESNTSLMYEAGID 109
             +L+  S     Y AG D
Sbjct: 61  NDDLKRAS-----YNAGSD 74


>AT2G41000.2 | Symbols:  | Chaperone DnaJ-domain superfamily protein
           | chr2:17111673-17112532 FORWARD LENGTH=211
          Length = 211

 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 11/80 (13%)

Query: 37  LMDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGS------KCGVQFHHINEAYDVV 90
           ++D Y+ L V   A++ EVK AFR LA++YHPD    S         V+F  ++EAY+V+
Sbjct: 1   MVDHYQVLGVTRNATKKEVKDAFRRLAIKYHPDKHAQSPEHVRHNATVRFKLVSEAYEVL 60

Query: 91  MANLRGESNTSLMYEAGIDE 110
             +L+  S     Y AG D 
Sbjct: 61  NDDLKRAS-----YNAGSDS 75


>AT5G01390.3 | Symbols:  | DNAJ heat shock family protein |
          chr5:160500-162199 REVERSE LENGTH=238
          Length = 238

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 38 MDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSK--CGVQFHHINEAYDVV 90
          +D YK L V   A+  E+KKA+R LA+++HPD    +K     +F  I+EAYDV+
Sbjct: 3  VDFYKVLEVDRSANDDELKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVL 57


>AT5G01390.4 | Symbols:  | DNAJ heat shock family protein |
          chr5:160500-162199 REVERSE LENGTH=296
          Length = 296

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 38 MDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSK--CGVQFHHINEAYDVV 90
          +D YK L V   A+  E+KKA+R LA+++HPD    +K     +F  I+EAYDV+
Sbjct: 3  VDFYKVLEVDRSANDDELKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVL 57


>AT1G59725.1 | Symbols:  | DNAJ heat shock family protein |
          chr1:21950738-21952210 FORWARD LENGTH=331
          Length = 331

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 38 MDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGS---KCGVQFHHINEAYDVV 90
          +D Y  L V P A++ ++KK++R LA+++HPD    S   +   +F  I+EAYDV+
Sbjct: 3  VDYYNVLNVNPSATEDDLKKSYRRLAMKWHPDKNPTSIKQEAEAKFKQISEAYDVL 58


>AT5G01390.1 | Symbols:  | DNAJ heat shock family protein |
          chr5:160500-162199 REVERSE LENGTH=335
          Length = 335

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 38 MDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSK--CGVQFHHINEAYDVV 90
          +D YK L V   A+  E+KKA+R LA+++HPD    +K     +F  I+EAYDV+
Sbjct: 3  VDFYKVLEVDRSANDDELKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVL 57


>AT5G01390.2 | Symbols:  | DNAJ heat shock family protein |
          chr5:160500-162199 REVERSE LENGTH=277
          Length = 277

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 38 MDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSK--CGVQFHHINEAYDVV 90
          +D YK L V   A+  E+KKA+R LA+++HPD    +K     +F  I+EAYDV+
Sbjct: 3  VDFYKVLEVDRSANDDELKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVL 57


>AT3G17830.1 | Symbols:  | Molecular chaperone Hsp40/DnaJ family
           protein | chr3:6101868-6104503 FORWARD LENGTH=517
          Length = 517

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 39  DSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSKCGVQFHHINEAYDVVMANLRGES 98
           D Y TL V   A+  E+K ++R LA +YHPD+ +      +F  I+ AY+ V+++    S
Sbjct: 63  DHYSTLNVNRNATLQEIKSSYRKLARKYHPDMNKNPGAEDKFKQISAAYE-VLSDEEKRS 121

Query: 99  NTSLMYEAGIDEAIKGVND 117
                 EAG++    G  D
Sbjct: 122 AYDRFGEAGLEGDFNGSQD 140


>AT4G28480.2 | Symbols:  | DNAJ heat shock family protein |
          chr4:14073310-14075091 FORWARD LENGTH=290
          Length = 290

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 38 MDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSK--CGVQFHHINEAYDVV 90
          +D YK L+V   A+  ++KKA+R LA+++HPD    +K     +F  I+EAYDV+
Sbjct: 3  VDYYKVLQVDRSANDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVL 57


>AT4G28480.1 | Symbols:  | DNAJ heat shock family protein |
          chr4:14073310-14075091 FORWARD LENGTH=348
          Length = 348

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 38 MDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSK--CGVQFHHINEAYDVV 90
          +D YK L+V   A+  ++KKA+R LA+++HPD    +K     +F  I+EAYDV+
Sbjct: 3  VDYYKVLQVDRSANDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVL 57


>AT3G08910.1 | Symbols:  | DNAJ heat shock family protein |
          chr3:2710402-2711811 REVERSE LENGTH=323
          Length = 323

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 38 MDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSK--CGVQFHHINEAYDVV 90
          +D YK L+V   A   ++KKA+R LA+++HPD    +K     +F  I+EAYDV+
Sbjct: 3  VDYYKVLQVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVL 57


>AT2G20560.1 | Symbols:  | DNAJ heat shock family protein |
           chr2:8848353-8849815 REVERSE LENGTH=337
          Length = 337

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 7/79 (8%)

Query: 38  MDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSKCGVQ--FHHINEAYDVVMANLR 95
           +D YK L+V   AS  ++KKA+R LA+++HPD    +K   +  F  I+EAY+V+     
Sbjct: 3   VDYYKVLQVDRSASDDDLKKAYRKLAMKWHPDKNPNNKKDAEAMFKQISEAYEVL----- 57

Query: 96  GESNTSLMYEAGIDEAIKG 114
            +     +Y+   +E +KG
Sbjct: 58  SDPQKKAVYDQYGEEGLKG 76


>AT2G22360.1 | Symbols:  | DNAJ heat shock family protein |
           chr2:9498162-9500459 FORWARD LENGTH=442
          Length = 442

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 1   MAAAAAGVIGGYSLSWMQFKGRERNHN---RVMICCSSSLMDSYKTLRVQPGASQTEVKK 57
           + A+ + +    SL ++   G  RN +   R       +  D Y  L V   A++ E+K 
Sbjct: 45  LGASKSSMFSHGSLPFLSMTGMSRNMHPPRRGSRFTVRADADYYSVLGVSKNATKAEIKS 104

Query: 58  AFRHLALQYHPDVCQGSKCGVQFHHINEAYDVV 90
           A+R LA  YHPDV +      +F  I+ AY+V+
Sbjct: 105 AYRKLARNYHPDVNKDPGAEEKFKEISNAYEVL 137