Miyakogusa Predicted Gene
- Lj2g3v3403230.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3403230.1 Non Chatacterized Hit- tr|Q56WL2|Q56WL2_ARATH
Putative uncharacterized protein At1g20760
OS=Arabidop,68.85,5e-18,seg,NULL; EF-hand,NULL; no
description,EF-hand-like domain; efhand_3,NULL;
INTERSECTIN-RELATED,NULL;,CUFF.40150.1
(568 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21630.1 | Symbols: | Calcium-binding EF hand family protein... 305 7e-83
AT1G21630.2 | Symbols: | Calcium-binding EF hand family protein... 289 4e-78
AT1G20760.1 | Symbols: | Calcium-binding EF hand family protein... 52 1e-06
AT3G20290.2 | Symbols: ATEHD1, EHD1 | EPS15 homology domain 1 | ... 49 9e-06
AT3G20290.1 | Symbols: ATEHD1, EHD1 | EPS15 homology domain 1 | ... 49 9e-06
>AT1G21630.1 | Symbols: | Calcium-binding EF hand family protein |
chr1:7581457-7587796 FORWARD LENGTH=1218
Length = 1218
Score = 305 bits (780), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 160/281 (56%), Positives = 193/281 (68%), Gaps = 6/281 (2%)
Query: 289 QPQPPWPRMTQSDIQKYMKVFMEVDTDRDGKITGEQARNLFLSWRLPREVLMKVWDLSDQ 348
Q QPPWP+MT +D+QKY KVF++VDTDRDGKITG QARNLFLSWRLPR+ L +VWDLSDQ
Sbjct: 412 QSQPPWPKMTPADVQKYTKVFVQVDTDRDGKITGNQARNLFLSWRLPRDALKQVWDLSDQ 471
Query: 349 DNDSMLSLREFCIALYLMERHREGRVLPEVLPSNIVLD---LPTTGQPAPLHSAVTWGNP 405
DNDSMLSLREFCIA+YLMER+REGR LP V PS+I+ + GQ H +WG+P
Sbjct: 472 DNDSMLSLREFCIAVYLMERYREGRPLPPVFPSSIIHSESMFTSPGQSVAPHGNASWGHP 531
Query: 406 SGFQQQQGVTGSGARQVNXXXXXXXXXXXXXXXSDEGPQNKQQKSRVPVLEKNLITQLSS 465
GFQQQ G + SD Q Q K ++PVLEK L+ QLS
Sbjct: 532 QGFQQQ---PHPGGLRPPAGPKGKPPRPVPLSPSDGMVQPTQPKRKMPVLEKPLVDQLSK 588
Query: 466 DEQNSINSKFQEATEADXXXXXXXXXXXXXXXXIEFCRAKMQELVIYKSRCDNRLNEIVE 525
+EQ+S+N+KF+EAT D I+F RAKMQELV+YKSRCDNR NEI E
Sbjct: 589 EEQDSLNTKFEEATAVDKKVDELEKEIADSKQKIDFFRAKMQELVLYKSRCDNRYNEIAE 648
Query: 526 RISADRREVEILGKKYEDKYKQVGDLSSRLTTEEATFRDIQ 566
R+ D+RE+E L KKYE+KYK+ G++ S+LT EEATFRDIQ
Sbjct: 649 RVLGDKRELESLAKKYEEKYKKSGNVGSKLTIEEATFRDIQ 689
>AT1G21630.2 | Symbols: | Calcium-binding EF hand family protein |
chr1:7581457-7587796 FORWARD LENGTH=1247
Length = 1247
Score = 289 bits (739), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 160/311 (51%), Positives = 193/311 (62%), Gaps = 36/311 (11%)
Query: 289 QPQPPWPRMTQSDIQKYMKVFMEVDTDRDGKITGEQARNLFLSWRLPREVLMKVWDLSDQ 348
Q QPPWP+MT +D+QKY KVF++VDTDRDGKITG QARNLFLSWRLPR+ L +VWDLSDQ
Sbjct: 412 QSQPPWPKMTPADVQKYTKVFVQVDTDRDGKITGNQARNLFLSWRLPRDALKQVWDLSDQ 471
Query: 349 DNDSMLSLREFCIALYLMERHREGRVLPEVLPSNIVLD---LPTTGQPAPLHSAVTWGNP 405
DNDSMLSLREFCIA+YLMER+REGR LP V PS+I+ + GQ H +WG+P
Sbjct: 472 DNDSMLSLREFCIAVYLMERYREGRPLPPVFPSSIIHSESMFTSPGQSVAPHGNASWGHP 531
Query: 406 SGFQQQQGVTGSGARQVNXXXXXXXXXXXXXXXSDEGPQNKQQKSRVPVLEKNLITQLSS 465
GFQQQ G + SD Q Q K ++PVLEK L+ QLS
Sbjct: 532 QGFQQQ---PHPGGLRPPAGPKGKPPRPVPLSPSDGMVQPTQPKRKMPVLEKPLVDQLSK 588
Query: 466 DEQNSINSKFQEATEADXXXX------------------------------XXXXXXXXX 495
+EQ+S+N+KF+EAT D
Sbjct: 589 EEQDSLNTKFEEATAVDKKFSFFAFSIRRYLLPLPYGIYMKYLWICVAIVDELEKEIADS 648
Query: 496 XXXIEFCRAKMQELVIYKSRCDNRLNEIVERISADRREVEILGKKYEDKYKQVGDLSSRL 555
I+F RAKMQELV+YKSRCDNR NEI ER+ D+RE+E L KKYE+KYK+ G++ S+L
Sbjct: 649 KQKIDFFRAKMQELVLYKSRCDNRYNEIAERVLGDKRELESLAKKYEEKYKKSGNVGSKL 708
Query: 556 TTEEATFRDIQ 566
T EEATFRDIQ
Sbjct: 709 TIEEATFRDIQ 719
>AT1G20760.1 | Symbols: | Calcium-binding EF hand family protein |
chr1:7209515-7214773 FORWARD LENGTH=1019
Length = 1019
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 301 DIQKYMKVFMEVDTDRDGKITGEQARNLFLSWRLPREVLMKVWDLSDQDNDSMLSLREFC 360
++ ++ F D D DG+I+G +A F L ++VL ++W LSD+ + L + F
Sbjct: 7 NMDQFEAYFKRADLDGDGRISGAEAVGFFQGSGLSKQVLAQIWSLSDRSHSGFLDRQNFY 66
Query: 361 IALYLMERHREGRVL-PEVLPSNIVLDLPTTGQ-------------PAPLHSAVTWGNPS 406
+L L+ + R L PE++ N L+ P + P P +A T G S
Sbjct: 67 NSLRLVTVAQSKRDLTPEIV--NAALNTPAAAKIPPPKINLSAIPAPRPNPAATTVGPVS 124
Query: 407 GF 408
GF
Sbjct: 125 GF 126
>AT3G20290.2 | Symbols: ATEHD1, EHD1 | EPS15 homology domain 1 |
chr3:7075057-7078655 REVERSE LENGTH=545
Length = 545
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 305 YMKVFMEVDTDRDGKITGEQARNLFLSWRLPREVLMKVWDLSDQDNDSMLSLREFCIALY 364
Y + F D+D DG+ITG A F LPR L ++W ++D L +EF +A+
Sbjct: 19 YKEWFEFSDSDGDGRITGNDAIKFFTMSNLPRPELKQIWAIADSKRQGYLGFKEFIVAMQ 78
Query: 365 LMERHREGR-VLPEVLPSNI 383
L+ + G + EVL S++
Sbjct: 79 LVSLAQTGHEISHEVLISDV 98
>AT3G20290.1 | Symbols: ATEHD1, EHD1 | EPS15 homology domain 1 |
chr3:7075057-7078655 REVERSE LENGTH=545
Length = 545
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 305 YMKVFMEVDTDRDGKITGEQARNLFLSWRLPREVLMKVWDLSDQDNDSMLSLREFCIALY 364
Y + F D+D DG+ITG A F LPR L ++W ++D L +EF +A+
Sbjct: 19 YKEWFEFSDSDGDGRITGNDAIKFFTMSNLPRPELKQIWAIADSKRQGYLGFKEFIVAMQ 78
Query: 365 LMERHREGR-VLPEVLPSNI 383
L+ + G + EVL S++
Sbjct: 79 LVSLAQTGHEISHEVLISDV 98